pycasso-queue-slurm.rc 4.9 KB

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116
  1. !
  2. ! Settings for SLURM job manager - for details and other options: "man sbatch" or "web documentation"
  3. !
  4. queue : slurm
  5. ! (1) passed directly (ie "as is" at the command line)
  6. !------------------------------------------------------------------
  7. ! (--share or -s for example to share node(s) with other jobs)
  8. ! add here also the long options
  9. queue.slurm.submit.options :
  10. !queue.slurm.submit.options : --share
  11. ! Note that this is added to the 'submit.options' key value from the pycasso-tm5-expert.rc
  12. ! (2) Short options set by end user (and processed by submit_tm5_tools.py script
  13. !----------------------------------------------
  14. ! first, list of queue options (same for each step):
  15. !queue.slurm.options : J N n c p t
  16. queue.slurm.options.default : J N p t
  17. ! job name:
  18. queue.slurm.option.default.J : ${job.name}
  19. ! minimum number of node
  20. queue.slurm.option.default.N : 1
  21. ! ${slurm.nnode}
  22. !queue.slurm.option.run.c : 1
  23. ! maximum number of tasks (but @workshop, was told to use it as number of proc... over-allocate?)
  24. !queue.slurm.option.n : <auto>
  25. ! tasks per node
  26. !queue.slurm.option.tpn :
  27. ! ensure correct environment for init step
  28. queue.slurm.options.init : J n p t e o
  29. queue.slurm.option.init.n : 1
  30. queue.slurm.option.init.J : ${job.name}
  31. queue.slurm.option.init.o : <auto>
  32. queue.slurm.option.init.e : <auto>
  33. ! ensure correct environment for done step
  34. queue.slurm.options.done : J N n p t e o
  35. queue.slurm.option.done.n : 1
  36. queue.slurm.option.done.J : ${job.name}
  37. queue.slurm.option.done.p : short
  38. queue.slurm.option.done.N : 1
  39. queue.slurm.option.done.t : 00:10:00
  40. queue.slurm.option.done.o : <auto>
  41. queue.slurm.option.done.e : <auto>
  42. ! ensure correct environment for run step
  43. queue.slurm.options.run : J N n p t c e o
  44. queue.slurm.option.run.J : ${job.name}
  45. queue.slurm.option.run.n : ${par.ntask}
  46. queue.slurm.option.run.c : ${par.nthread}
  47. queue.slurm.option.run.N : 1
  48. queue.slurm.option.run.t : ${ll.wall_clock_limit}
  49. queue.slurm.option.run.o : <auto>
  50. queue.slurm.option.run.e : <auto>
  51. ! list of node names. Can be simple: neuron224
  52. ! or complicated: mynode[1-5,7,..]
  53. !queue.slurm.option.w : ${slurm.nodename}
  54. !
  55. !queue.slurm.option.s: F
  56. ! partition
  57. queue.slurm.option.default.p : normal
  58. ! sbatch -p 48gbmem -N 1 -n 1 -J TM5 --share --ntasks-per-node=1 -w neuron204 BULL_run.slurm
  59. ! sbatch -p 48gbmem -N 1 -n 1 -J TM5 --share --ntasks-per-node=1 -w neuron204 BULL_run.slurm
  60. ! sbatch -p 48gbmem -N 1 -n 1 -J TM5 --share --ntasks-per-node=1 -w neuron204 BULL_run.slurm
  61. ! sbatch -p 96gbmem -N 1 -n 1 -J TM5 --share --ntasks-per-node=1 -w neuron224 BULL_run.slurm
  62. ! sbatch -p 96gbmem -N 1 -n 1 -J TM5 --share --ntasks-per-node=1 -w neuron224 BULL_run.slurm
  63. ! sbatch -p 96gbmem -N 1 -n 1 -J TM5 --share --ntasks-per-node=1 -w neuron224 BULL_run.slurm
  64. ! sbatch -p 96gbmem -N 1 -n 1 -J TM5 --share --ntasks-per-node=1 -w neuron224 BULL_run.slurm
  65. ! sbatch -p 96gbmem -N 1 -n 1 -J TM5 --share --ntasks-per-node=1 -w neuron224 BULL_run.slurm
  66. ! sbatch -p 96gbmem --share --ntasks-per-node=1 -w neuron224 BULL_run.slurm
  67. ! sbatch -p 96gbmem -N 1 -n 2 -J TM5 --share --ntasks-per-node=1 -w neuron224 BULL_run.slurm
  68. ! sbatch -p 96gbmem -N 1 -n 2 -J TM5 --share --ntasks-per-node=1 -w neuron204 BULL_run.slurm
  69. ! sbatch -p 48gbmem -N 1 -n 2 -J TM5 --share --ntasks-per-node=1 -w neuron204 BULL_run.slurm
  70. ! sbatch -p 96gbmem -J TM5 -w neuron BULL_run.slurm
  71. ! sbatch -p 96gbmem -N 2 -n 24 -J TM5 --ntasks-per-node=12 -w neuron[224,225] BULL_run.slurm
  72. ! sbatch -p 96gbmem -N 1 -n 1 -J TM5 --ntasks-per-node=12 -w neuron224 BULL_run.slurm
  73. ! sbatch -p 96gbmem -N 1 -n 8 -J TM5 --ntasks-per-node=12 -w neuron224 BULL_run.slurm
  74. ! sbatch -p 96gbmem -N 1 -n 12 -J TM5 --ntasks-per-node=12 -w neuron225 BULL_run.slurm
  75. ! sbatch -p 96gbmem -N 1 -n 4 -J TM5 --ntasks-per-node=12 -w neuron225 BULL_run.slurm
  76. ! sbatch -p 96gbmem -w neuron225 BULL_run.slurm
  77. ! sbatch -p 96gbmem -w neuron225 BULL_run.slurm
  78. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  79. ! sbatch -p 48gbmem -w neuron202 BULL_run.slurm
  80. ! sbatch -p 48gbmem -w neuron202 BULL_run.slurm
  81. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  82. ! sbatch -p 96gbmem -w neuron225 BULL_run.slurm
  83. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  84. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  85. ! sbatch -p 48gbmem -w neuron202 BULL_run.slurm
  86. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  87. ! sbatch -p 96gbmem -w neuron[224,225] BULL_run.slurm
  88. ! sbatch -p 96gbmem -w neuron[224,225] BULL_run.slurm
  89. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  90. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  91. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  92. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  93. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  94. ! sbatch -p 96gbmem -w neuron224 BULL_run.slurm
  95. ! MPIMPIANALYSER_PROFILECOMM=1 srunsbatch -p 96gbmem -w neuron224 BULL_run.slurm
  96. ! sbatch -p 96gbmem -w neuron225 BULL_run.slurm
  97. ! man sbatch