ecearth3/sources/tm5mp/rc/main-chem.rc.tmpl

!=====================================================================!
! Run main specifications
!=====================================================================!
! [id]  basename for executable, runtime rcfile, job script (hence logfiles too), ${my.basename}__sources.tar
my.basename     : tm5mp

! timing
timerange.start : 2006-01-01 00:00:00
timerange.end   : 2006-02-01 00:00:00
jobstep.length  : month

! autorun
submit.auto     : False

! main directories (compilation, run, meteo)
my.project.dir  : ${my.scratch}/TM5/benchmark_chem
my.run.dir      : ${my.project.dir}/rundir
my.meteo.dir    : ${my.scratch}/TM5_METEO/hdf

! dir of standard input files (read in model init)
inputdir        : ${my.data.dir}

!=====================================================================!
! Environment (compiler, libraries, job manager, //, ...)
!=====================================================================!
#include rc/machine-<machine-name>.rc

! add here any keys required by your job manager and defined in your machine.rc file (e.g., my.queue.make)
my.queue.account         : 
my.build.configure.flags : optim-strict

par.mpi       : T
par.nx        : 1
par.ny        : 45

!=====================================================================!
! Grids & Levels
!=====================================================================!
my.levs       :  tropo34
! regions name
my.region1    :  glb300x200
! grid names for meteo input (allows on the flight regridding):
my.region1m   :  glb100x100

! Do not use default region file for 1x1 runs, the reduced grid is too agressive for the chemistry.
#if "${my.region1}" == "glb100x100"
#include rc/regions-glb100x100-chem.rc
#else
#include rc/regions-${my.region1}.rc
#endif

!=====================================================================!
! Source code (list of proj)
!=====================================================================!
my.source.proj : proj/output proj/budget10 proj/cb05

!=====================================================================!
! C-preprocessors: DF, TMM, TM5
!=====================================================================!
#if "${par.mpi}" in ["T","True"] :
my.df.define   :  with_hdf4 with_hdf5_par with_netcdf4_par
#else
my.df.define   :  with_hdf4 with_hdf5 with_netcdf4
#endif

! macro's for meteo input:
#if "${my.meteo.format}" == "tm5-nc"
my.tmm.define  :  with_tmm_tm5 with_udunits2
#else
my.tmm.define  :  with_tmm_tm5
#endif

my.without    :  

!standard chemistry uses:
my.def_advec  : slopes
my.defs_emis  : with_ch4_emis
my.defs_chem  : with_m7 with_optics
my.defs_misc  : with_budgets

my.tm5.define : ${my.without} ${my.def_advec} ${my.defs_misc} ${my.defs_chem} ${my.defs_emis}

!=====================================================================!
! Model tuning
!=====================================================================!
! model timestep
time.ntimestep              : 3600
time.ndyn_max               : 3600
! processes
proces.advection.reduced    : T
proces.wet_removal.cp_scale : 0.5
! read diffusion coefficients (instead of calculate) (also: write if doesnot exist)
diffusion.write             : F
diffusion.dir               : ${my.run.dir}/output
!(diffusion dir is parent dir of diffusion files. Must be specified if diffusion.write is T
! sub-dir/fname are: /yyyy/mm/dkg/dd/dkg_<grid>_z<nlevels>_yyyymmddhhmmss.hdf

!=====================================================================!
! Restart files
!=====================================================================!
! initial fields
istart              : 33
! Directory (case of istart=33 or 32)
restart.read.dir    : /PATH/TO/TM5_INPUT/testdata_restart/
! File (case of istart=4, 30, 31, 5)
start.31.glb300x200 : ${PERM}/TM5_INPUT/testdata_restart/save_2007010100_glb300x200.hdf
start.31.glb100x100 : ${PERM}/TM5_INPUT/testdata_restart/save_2007010100_glb300x200.hdf
start.5.glb300x200  : ${PERM}/TM5_INPUT/testdata_restart/mmix_2006010100_2006020100_glb300x200.hdf

restart.write             : T
! extra restart files
restart.write.extra       : F
restart.write.extra.hour  : 00
restart.write.extra.dhour : 24
! where to write restart files
restart.write.dir         : ${my.run.dir}/restart
! ensure creation of directory
restart.install.dir       : ${restart.write.dir}

!=====================================================================!
! METEO SETTINGS
!=====================================================================!
my.meteo.class        : ei
my.meteo.resol        : glb100x100
my.meteo.format       : tm5-nc
time.fc               : F
time.fc.day0          : 
my.tmm.setup.apply    : T

convective.fluxes.tiedtke : F

#include rc/meteo-tm5-default.rc

!=====================================================================!
! Extra ressources
!=====================================================================!
#include rc/expert-default.rc

#include chem-input.rc

!=====================================================================!
! Log & output dir
!=====================================================================!
! Log
okdebug               : F
go.print.all          : F
go.print.prompt.pe    : F
go.print.trace        : F
go.print.file         : F
go.print.file.base    : log.ctm

output.dir            : ${my.run.dir}/output
output.overwrite      : T

! alternative output dir  
output.dir.base       :  
output.dir.extensions :  

output.types          : timing settings

!=====================================================================!
! Optional output from 'BASE' code
!=====================================================================!
! (monthly) mean mixing ratio
output.mmix                : T

! budget fluxes through boundaries
apply.budget.global.flux   : F
budget.global.flux.lon_in  : -12
budget.global.flux.lon_out :  36
budget.global.flux.lat_in  :  34
budget.global.flux.lat_out :  62

! Non-Horizontally-Aggregated-Budgets
write.column.budgets : T

! profiling
timing.output              : T
timing.output.subdir       : profile

!output.after.step         :

!=====================================================================!
! Optional output from 'PROJ/USER_OUTPUT' code
!=====================================================================!
! Grids setting
settings.output          : T
settings.output.subdir   : 

! Station output
output.station           : F
inputdir.station         : ${my.scratch}/TM5/TM5-input/
input.station.filename   : station.emep.list
input.station.filename2  :
input.station.fileformat : 1
station.speclist         : SO2 NOy CH4 OH
output.station.filename  : tm5_emep.hdf

! Flight tracks
output.flight            : F

! All fields on root processor
output.mix               : F
output.mix.dhour         : 3

! Aerocom output (cannot do -fpe0 with Aerocom output)
output.aerocom          : F
! Set output frequency to "hourly", "daily" or "monthly"
output.aerocom.freq     : monthly
output.aerocom.exper    : AP3
output.aerocom.dhour    : 1
output.aerocom.stations : T
pm.sizelimits            : 2 5 10

! General output
! only one hourly
output.general          : T
output.general.freq     : hourly
output.general.exper    : EXP
output.general.dhour    : 1
! all_chemistry: all or subset of gasphase compounds
output.general.all_chemistry    : F
output.general.2d       : T
output.general.3d       : T

! AerChemMIP and CRESCENDO output
output.aerchemmip: T
output.aerchemmip.1h: T
output.aerchemmip.dhour: 6
output.aerchemmip.experiment: SOMETHING
output.aerchemmip.realm: atmosChem
output.aerchemmip.sourcetype: AP3
output.aerchemmip.experimentid: id00
output.crescendo: T

! diagnostic CCN
input.diagnostic.CCN    : T
input.supersat          : 8
! supersaturation [%RH]
supersat.values         : 0.05 0.1 0.2 0.3 0.5 0.7 1.0 1.4

! NOAA output
output.noaa              : F

! Time Series
output.pdump                        :  T
output.pdump.dataset.author         :  John Doe
output.pdump.dataset.institution    :  My Company, Somewhere
output.pdump.dataset.version        :  benchmark

output.pdump.fname.model            :  TM5 
output.pdump.fname.expid            :  tropomi
output.pdump.fname.grid.glb300x200  :  glb3x2
output.pdump.fname.grid.eur100x100  :  eur1x1

output.pdump.griddef.apply          :  T

output.pdump.tp.apply               :  F
output.pdump.tp.dhour               :  3

output.pdump.vmr.n                  :  1

output.pdump.vmr.001.apply          :  T
output.pdump.vmr.001.fname          :  gas
output.pdump.vmr.001.dhour          :  3
output.pdump.vmr.001.tracers        :  CO O3 NO2 CH2O

output.pdump.lt.apply               :  F
output.pdump.lt.tracers             :  O3
output.pdump.lt.localtime           :  2

output.pdump.lt2.apply              :  F
output.pdump.lt2.tracers            :  
output.pdump.lt2.localtime          :  

output.pdump.depositions.apply      :  F
output.pdump.depositions.dhour      :  3
output.pdump.depositions.tracers    :  O3 HNO3 NO NO2 H2O2 CH2O PAN CO NH3 NH4 SO2 NOy

output.pdump.depvels.apply          :  F
output.pdump.depvels.dhour          :  3
output.pdump.depvels.tracers        :  O3 HNO3 NO NO2 H2O2 CH2O PAN CO NH3 NH4 SO2

!=====================================================================!
! PRE-Processing
!=====================================================================!

! I - Installation of input files ("install" keys)
install.tasks                 : ${my.install.tasks} restart

! II - User scripts to setup run
input.user.scripts            : <bindir>/tm5-tmm-setup <rcfile>

!=====================================================================!
! POST-Processing
!=====================================================================!

! I - Archive output ("store" keys)
default.store.zipper          :  
default.store.arch            : ${my.project.dir}/ARCHIVE
default.store.renew           : True
!----------------------------------------------------------
store.condition               : False
store.tasks                   : 
sources.store.extra.command   : 

! II - Touch files
output.touch                  : False

! III - Run user scripts
output.user.scripts.condition : False
output.user.scripts           : 

! IV - DIADEM
!#include tools/diadem/rc/diadem.rc

!=====================================================================!
! Miscelleaneous (do not modify!)                                     !
!=====================================================================!
par.ntask     : 1  ! dummy value, this is set by the pycasso user script