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|
- name = 'R'
- version = '3.4.3'
- x11ver = '20171023'
- versionsuffix = '-X11-%s' % x11ver
- homepage = 'http://www.r-project.org/'
- description = """R is a free software environment for statistical computing and graphics."""
- toolchain = {'name': 'foss', 'version': '2017b'}
- sources = [SOURCE_TAR_GZ]
- source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s']
- checksums = ['7a3cb831de5b4151e1f890113ed207527b7d4b16df9ec6b35e0964170007f426']
- builddependencies = [
- ('pkg-config', '0.29.2'),
- ]
- dependencies = [
- ('X11', x11ver),
- ('Mesa', '17.2.5'),
- ('libGLU', '9.0.0'),
- ('cairo', '1.14.10'),
- ('libreadline', '7.0'),
- ('ncurses', '6.0'),
- ('bzip2', '1.0.6'),
- ('XZ', '5.2.3'),
- ('zlib', '1.2.11'),
- ('SQLite', '3.20.1'),
- ('PCRE', '8.41'),
- ('libpng', '1.6.32'), # for plotting in R
- ('libjpeg-turbo', '1.5.2'), # for plottting in R
- ('LibTIFF', '4.0.9'),
- ('Java', '1.8.0_152', '', True), # Java bindings are built if Java is found, might as well provide it
- ('Tcl', '8.6.7'), # for tcltk
- ('Tk', '8.6.7'), # for tcltk
- ('cURL', '7.55.1'), # for RCurl
- ('libxml2', '2.9.4'), # for XML
- ('GDAL', '2.2.3', '-Python-2.7.14'), # for rgdal
- ('PROJ', '4.9.3'), # for rgdal
- ('GMP', '6.1.2'), # for igraph
- ('NLopt', '2.4.2'), # for nloptr
- ('FFTW', '3.3.6'), # for fftw
- ('libsndfile', '1.0.28'), # for seewave
- # OS dependency should be preferred if the os version is more recent then this version,
- # it's nice to have an up to date openssl for security reasons
- # ('OpenSSL', '1.0.2h'),
- ]
- osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')]
- configopts = "--with-pic --enable-threads --enable-R-shlib"
- # some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below
- configopts += " --with-recommended-packages=no"
- # specify that at least EasyBuild v3.5.0 is required,
- # since we rely on the updated easyblock for R to configure correctly w.r.t. BLAS/LAPACK
- easybuild_version = '3.5.0'
- exts_default_options = {
- 'source_urls': [
- 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive
- 'http://cran.r-project.org/src/contrib/', # current version of packages
- 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages
- ],
- 'source_tmpl': '%(name)s_%(version)s.tar.gz',
- }
- # !! order of packages is important !!
- # packages updated on Dec 4th 2017
- exts_list = [
- 'base',
- 'datasets',
- 'graphics',
- 'grDevices',
- 'grid',
- 'methods',
- 'splines',
- 'stats',
- 'stats4',
- 'tools',
- 'utils',
- ('Rmpi', '0.6-6', {
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- }),
- ('abind', '1.4-5', {
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- ('magic', '1.5-6', {
- 'checksums': ['1b6c3f5bef0ddc28c4b68894051df5d9c0d4985d9e6ad81892369d0f7fe0298d'],
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- ('geometry', '0.3-6', {
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- ('bit', '1.1-12', {
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- ('filehash', '2.4-1', {
- 'checksums': ['d0e087d338d89372c251c18fc93b53fb24b1750ea154833216ff16aff3b1eaf4'],
- }),
- ('ff', '2.2-13', {
- 'checksums': ['8bfb08afe0651ef3c23aaad49208146d5f929af5af12a25262fe7743fa346ddb'],
- }),
- ('bnlearn', '4.2', {
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- }),
- ('bootstrap', '2017.2', {
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- }),
- ('combinat', '0.0-8', {
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- ('deal', '1.2-37', {
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- ('fdrtool', '1.2.15', {
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- }),
- ('formatR', '1.5', {
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- }),
- ('gtools', '3.5.0', {
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- }),
- ('gdata', '2.18.0', {
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- }),
- ('GSA', '1.03', {
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- }),
- ('highr', '0.6', {
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- }),
- ('infotheo', '1.2.0', {
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- }),
- ('lars', '1.2', {
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- }),
- ('lazy', '1.2-15', {
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- ('kernlab', '0.9-25', {
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- }),
- ('mime', '0.5', {
- 'checksums': ['fcc72115afb0eb43237da872754464f37ae9ae097f332ec7984149b5e3a82145'],
- }),
- ('markdown', '0.8', {
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- ('mlbench', '2.1-1', {
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- ('NLP', '0.1-11', {
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- }),
- ('mclust', '5.4', {
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- }),
- ('RANN', '2.5.1', {
- 'checksums': ['75277e5d8a13ca01ff387f99d403268a8077862d4e95b076b74fb1b5538a8546'],
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- ('rmeta', '2.16', {
- 'checksums': ['9efb9e4f1847b59d9cbc46c793c528cf1b79d961ab1e6636daad81390b0a76e8'],
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- ('segmented', '0.5-3.0', {
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- }),
- ('som', '0.3-5.1', {
- 'checksums': ['a6f4c0e5b36656b7a8ea144b057e3d7642a8b71972da387a7133f3dd65507fb9'],
- }),
- ('SuppDists', '1.1-9.4', {
- 'checksums': ['fcb571150af66b95dcf0627298c54f7813671d60521a00ed157f63fc2247ddb9'],
- }),
- ('stabledist', '0.7-1', {
- 'checksums': ['06c5704d3a3c179fa389675c537c39a006867bc6e4f23dd7e406476ed2c88a69'],
- }),
- ('survivalROC', '1.0.3', {
- 'checksums': ['1449e7038e048e6ad4d3f7767983c0873c9c7a7637ffa03a4cc7f0e25c31cd72'],
- }),
- ('pspline', '1.0-18', {
- 'checksums': ['f71cf293bd5462e510ac5ad16c4a96eda18891a0bfa6447dd881c65845e19ac7'],
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- ('timeDate', '3042.101', {
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- ('longmemo', '1.0-0', {
- 'checksums': ['acfd7c55389ebce52c7805c55a4b3161102b534c9a50aec891dc77ee6c99ccca'],
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- ('ADGofTest', '0.3', {
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- ('ade4', '1.7-8', {
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- ('AlgDesign', '1.1-7.3', {
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- ('base64enc', '0.1-3', {
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- ('BH', '1.65.0-1', {
- 'checksums': ['82baa78afe8f1edc3c7e84e1c9924321047e14c1e990df9b848407baf3f7cb58'],
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- ('brew', '1.0-6', {
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- ('Brobdingnag', '1.2-4', {
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- ('JBTools', '0.7.2.9', {
- 'checksums': ['b33cfa17339df7113176ad1832cbb0533acf5d25c36b95e888f561d586c5d62f'],
- }),
- ('RUnit', '0.4.31', {
- 'checksums': ['9d764092216391c9d7e13bbe1585f5d00c357ed8b04c7e66ed82d229c34119cb'],
- }),
- ('DistributionUtils', '0.5-1', {
- 'checksums': ['e92a29003d5e5974f53e40bdb8417e2bdabe784304e21360d7a1cbec7818853f'],
- }),
- ('gapfill', '0.9.5-3', {
- 'checksums': ['137286aff194b33b1bcd21fdcb5908308a23628e66b62ce5fbe1a70ff5668cc3'],
- }),
- ]
- moduleclass = 'lang'
|