R-3.6.2-foss-2019b.eb 95 KB

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  1. name = 'R'
  2. version = '3.6.2'
  3. homepage = 'https://www.r-project.org/'
  4. description = """R is a free software environment for statistical computing
  5. and graphics."""
  6. toolchain = {'name': 'foss', 'version': '2019b'}
  7. source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s']
  8. sources = [SOURCE_TAR_GZ]
  9. checksums = ['bd65a45cddfb88f37370fbcee4ac8dd3f1aebeebe47c2f968fd9770ba2bbc954']
  10. builddependencies = [
  11. ('pkg-config', '0.29.2'),
  12. ]
  13. dependencies = [
  14. ('X11', '20190717'),
  15. ('Mesa', '19.1.7'),
  16. ('libGLU', '9.0.1'),
  17. ('cairo', '1.16.0'),
  18. ('libreadline', '8.0'),
  19. ('ncurses', '6.1'),
  20. ('bzip2', '1.0.8'),
  21. ('XZ', '5.2.4'),
  22. ('zlib', '1.2.11'),
  23. ('SQLite', '3.29.0'),
  24. ('PCRE', '8.43'),
  25. ('libpng', '1.6.37'), # for plotting in R
  26. ('libjpeg-turbo', '2.0.3'), # for plottting in R
  27. ('LibTIFF', '4.0.10'),
  28. ('Java', '11', '', True),
  29. ('Tk', '8.6.9'), # for tcltk
  30. ('cURL', '7.66.0'), # for RCurl
  31. ('libxml2', '2.9.9'), # for XML
  32. ('GMP', '6.1.2'), # for igraph
  33. ('NLopt', '2.6.1'), # for nloptr
  34. ('FFTW', '3.3.8'), # for fftw
  35. ('libsndfile', '1.0.28'), # for seewave
  36. ('ICU', '66.1'), # for rJava & gdsfmt
  37. ('HDF5', '1.10.5'), # for hdf5r
  38. ('UDUNITS', '2.2.26'), # for units
  39. ('GSL', '2.6'), # for RcppGSL
  40. ('ImageMagick', '7.0.9-5'), # for animation
  41. # OS dependency should be preferred if the os version is more recent then
  42. # this version, it's nice to have an up to date openssl for security
  43. # reasons
  44. # ('OpenSSL', '1.1.1b'),
  45. ]
  46. osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')]
  47. configopts = "--with-pic --enable-threads --enable-R-shlib"
  48. # some recommended packages may fail in a parallel build (e.g. Matrix), and
  49. # we're installing them anyway below
  50. configopts += " --with-recommended-packages=no"
  51. # specify that at least EasyBuild v3.5.0 is required,
  52. # since we rely on the updated easyblock for R to configure correctly w.r.t. BLAS/LAPACK
  53. easybuild_version = '3.5.0'
  54. exts_default_options = {
  55. 'source_urls': [
  56. 'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive
  57. 'https://cran.r-project.org/src/contrib/', # current version of packages
  58. 'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages
  59. ],
  60. 'source_tmpl': '%(name)s_%(version)s.tar.gz',
  61. }
  62. # !! order of packages is important !!
  63. # packages updated on 16 December 2019
  64. exts_list = [
  65. 'base',
  66. 'datasets',
  67. 'graphics',
  68. 'grDevices',
  69. 'grid',
  70. 'methods',
  71. 'splines',
  72. 'stats',
  73. 'stats4',
  74. 'tools',
  75. 'utils',
  76. ('Rmpi', '0.6-9', {
  77. 'checksums': ['b2e1eac3e56f6b26c7ce744b29d8994ab6507ac88df64ebbb5af439414651ee6'],
  78. }),
  79. ('abind', '1.4-5', {
  80. 'checksums': ['3a3ace5afbcb86e56889efcebf3bf5c3bb042a282ba7cc4412d450bb246a3f2c'],
  81. }),
  82. ('magic', '1.5-9', {
  83. 'checksums': ['fa1d5ef2d39e880f262d31b77006a2a7e76ea38e306aae4356e682b90d6cd56a'],
  84. }),
  85. ('Rcpp', '1.0.3', {
  86. 'checksums': ['2b3500dd3aca16f7b3cb5442625e76dcf4f7c974b4249d33041e9184a5ff030e'],
  87. }),
  88. ('RcppProgress', '0.4.1', {
  89. 'checksums': ['11764105922f763d4c75c502599ec7dcc2fd629a029964caf53f98b41d0c607a'],
  90. }),
  91. ('lpSolve', '5.6.13.3', {
  92. 'checksums': ['e64165428c40d730f7686d233c22936bf4b3b91a618a600bdf87acaa905f5ff5'],
  93. }),
  94. ('linprog', '0.9-2', {
  95. 'checksums': ['8937b2e30692e38de1713f1513b78f505f73da6f5b4a576d151ad60bac2221ce'],
  96. }),
  97. ('geometry', '0.4.5', {
  98. 'checksums': ['8fedd17c64468721d398e3c17a39706321ab71098b29f5e8d8039dd115a220d8'],
  99. }),
  100. ('bit', '1.1-14', {
  101. 'checksums': ['5cbaace1fb643a665a6ca69b90f7a6d624270de82420ca7a44f306753fcef254'],
  102. }),
  103. ('filehash', '2.4-2', {
  104. 'checksums': ['b6d056f75d45e315943a4618f5f62802612cd8931ba3f9f474b595140a3cfb93'],
  105. }),
  106. ('ff', '2.2-14', {
  107. 'checksums': ['1c6307847275b1b8ad9e2ffdce3f4df3c9d955dc2e8a45e3fd7bfd2b0926e2f0'],
  108. }),
  109. ('bnlearn', '4.5', {
  110. 'checksums': ['a8047625533260a855d309b3c0785cbeec0f9ec13f284b6664a1f61638138578'],
  111. }),
  112. ('bootstrap', '2019.6', {
  113. 'checksums': ['5252fdfeb944cf1fae35016d35f9333b1bd1fc8c6d4a14e33901160e21968694'],
  114. }),
  115. ('combinat', '0.0-8', {
  116. 'checksums': ['1513cf6b6ed74865bfdd9f8ca58feae12b62f38965d1a32c6130bef810ca30c1'],
  117. }),
  118. ('deal', '1.2-39', {
  119. 'checksums': ['a349db8f1c86cbd8315c068da49314ce9eb585dbb50d2e5ff09300506bd8806b'],
  120. }),
  121. ('fdrtool', '1.2.15', {
  122. 'checksums': ['65f964aa768d0703ceb7a199adc5e79ca79a6d29d7bc053a262eb533697686c0'],
  123. }),
  124. ('formatR', '1.7', {
  125. 'checksums': ['a366621b3ff5f8e86a499b6f87858ad47eefdace138341b1377ecc307a5e5ddb'],
  126. }),
  127. ('gtools', '3.8.1', {
  128. 'checksums': ['051484459bd8ad1b03425b8843d24f6828fea18f7357cfa1c192198cc3f4ba38'],
  129. }),
  130. ('gdata', '2.18.0', {
  131. 'checksums': ['4b287f59f5bbf5fcbf18db16477852faac4a605b10c5284c46b93fa6e9918d7f'],
  132. }),
  133. ('GSA', '1.03.1', {
  134. 'checksums': ['e192d4383f53680dbd556223ea5f8cad6bae62a80a337ba5fd8d05a8aee6a917'],
  135. }),
  136. ('highr', '0.8', {
  137. 'checksums': ['4bd01fba995f68c947a99bdf9aca15327a5320151e10bd0326fad50a6d8bc657'],
  138. }),
  139. ('infotheo', '1.2.0', {
  140. 'checksums': ['9b47ebc3db5708c88dc014b4ffec6734053a9c255a9241fcede30fec3e63aaa3'],
  141. }),
  142. ('lars', '1.2', {
  143. 'checksums': ['64745b568f20b2cfdae3dad02fba92ebf78ffee466a71aaaafd4f48c3921922e'],
  144. }),
  145. ('lazy', '1.2-16', {
  146. 'checksums': ['c796c8b987ed1bd9dfddd593e17312ed681fc4fa3a1ecfe51da2def0ac1e50df'],
  147. }),
  148. ('kernlab', '0.9-29', {
  149. 'checksums': ['c3da693a0041dd34f869e7b63a8d8cf7d4bc588ac601bcdddcf7d44f68b3106f'],
  150. }),
  151. ('mime', '0.7', {
  152. 'checksums': ['11083ee44c92569aadbb9baf60a2e079ab7a721c849b74d102694975cc8d778b'],
  153. }),
  154. ('xfun', '0.11', {
  155. 'checksums': ['3cc24b5a67a11204255b71e5fadbb4c303dfb34a32e79c95b787aa8997e1cc36'],
  156. }),
  157. ('markdown', '1.1', {
  158. 'checksums': ['8d8cd47472a37362e615dbb8865c3780d7b7db694d59050e19312f126e5efc1b'],
  159. }),
  160. ('mlbench', '2.1-1', {
  161. 'checksums': ['748141d56531a39dc4d37cf0a5165a40b653a04c507e916854053ed77119e0e6'],
  162. }),
  163. ('NLP', '0.2-0', {
  164. 'checksums': ['fc64c80124c4e53b20f92b60c68e2fd33ee189653d0ceea410c32dd66d9e7075'],
  165. }),
  166. ('mclust', '5.4.5', {
  167. 'checksums': ['75f2963082669485953e4306ffa93db98335ee6afdc1318b95d605d56cb30a72'],
  168. }),
  169. ('RANN', '2.6.1', {
  170. 'checksums': ['b299c3dfb7be17aa41e66eff5674fddd2992fb6dd3b10bc59ffbf0c401697182'],
  171. }),
  172. ('rmeta', '3.0', {
  173. 'checksums': ['b9f9d405935cffcd7a5697ff13b033f9725de45f4dc7b059fd68a7536eb76b6e'],
  174. }),
  175. ('segmented', '1.1-0', {
  176. 'checksums': ['d081d0efaec708d717bf1248ba3df099876389c22796aad676655efb706e9d19'],
  177. }),
  178. ('som', '0.3-5.1', {
  179. 'checksums': ['a6f4c0e5b36656b7a8ea144b057e3d7642a8b71972da387a7133f3dd65507fb9'],
  180. }),
  181. ('SuppDists', '1.1-9.4', {
  182. 'checksums': ['fcb571150af66b95dcf0627298c54f7813671d60521a00ed157f63fc2247ddb9'],
  183. }),
  184. ('stabledist', '0.7-1', {
  185. 'checksums': ['06c5704d3a3c179fa389675c537c39a006867bc6e4f23dd7e406476ed2c88a69'],
  186. }),
  187. ('survivalROC', '1.0.3', {
  188. 'checksums': ['1449e7038e048e6ad4d3f7767983c0873c9c7a7637ffa03a4cc7f0e25c31cd72'],
  189. }),
  190. ('pspline', '1.0-18', {
  191. 'checksums': ['f71cf293bd5462e510ac5ad16c4a96eda18891a0bfa6447dd881c65845e19ac7'],
  192. }),
  193. ('timeDate', '3043.102', {
  194. 'checksums': ['377cba03cddab8c6992e31d0683c1db3a73afa9834eee3e95b3b0723f02d7473'],
  195. }),
  196. ('longmemo', '1.1-1', {
  197. 'checksums': ['0dd88e84a8376141d117bba39fe44f7d3c29d46fc103557fe98357f06e17d657'],
  198. }),
  199. ('ADGofTest', '0.3', {
  200. 'checksums': ['9cd9313954f6ecd82480d373f6c5371ca84ab33e3f5c39d972d35cfcf1096846'],
  201. }),
  202. ('MASS', '7.3-51.4', {
  203. 'checksums': [('9911d546a8d29dc906b46cb53ef8aad76d23566f4fc3b52778a1201f8a9b2c74',
  204. '844270a2541eaed420871dfb61d681aa67ee57126645fb6b144b436c25698eeb')],
  205. }),
  206. ('ade4', '1.7-13', {
  207. 'checksums': ['f5d0a7356ae63f82d3adb481a39007e7b0d70211b8724aa686af0c89c994e99b'],
  208. }),
  209. ('AlgDesign', '1.2.0', {
  210. 'checksums': ['ff86c9e19505770520e7614970ad19c698664d08001ce888b8603e44c2a3b52a'],
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  2149. }),
  2150. ('medflex', '0.6-6', {
  2151. 'checksums': ['b9d04fb5281d0ea0555ec4f327a0ee951a7f312a3af944578dc175183dc49211'],
  2152. }),
  2153. ('Rserve', '1.7-3.1', {
  2154. 'checksums': ['3ba1e919706e16a8632def5f45d666b6e44eafa6c14b57064d6ddf3415038f99'],
  2155. }),
  2156. ('spls', '2.2-3', {
  2157. 'checksums': ['bbd693da80487eef2939c37aba199f6d811ec289828c763d9416a05fa202ab2e'],
  2158. }),
  2159. ('Boruta', '6.0.0', {
  2160. 'checksums': ['1c9a7aabe09f040e147f6c614f5fe1d0b951d3b0f0024161fbb4c31da8fae8de'],
  2161. }),
  2162. ('dr', '3.0.10', {
  2163. 'checksums': ['ce523c1bdb62a9dda30afc12b1dd96975cc34695c61913012236f3b80e24bf36'],
  2164. }),
  2165. ('CovSel', '1.2.1', {
  2166. 'checksums': ['b375d00cc567e125ff106b4357654f43bba3abcadeed2238b6dea4b7a68fda09'],
  2167. }),
  2168. ('tmle', '1.4.0.1', {
  2169. 'checksums': ['075e7b7fe0496e02785eb35aed0db84476db756c6f14a0047808af2565b33501'],
  2170. }),
  2171. ('ctmle', '0.1.2', {
  2172. 'checksums': ['e3fa0722cd87aa0e0b209c2dddf3fc44c6d09993f1e66a6c43285fe950948161'],
  2173. }),
  2174. ('BayesPen', '1.0', {
  2175. 'checksums': ['772df9ae12cd8a3da1d5b7d1f1629602c7693f0eb03945784df2809e2bb061b0'],
  2176. }),
  2177. ('inline', '0.3.15', {
  2178. 'checksums': ['ff043fe13c1991a3b285bed256ff4a9c0ba10bee764225a34b285875b7d69c68'],
  2179. }),
  2180. ('BMA', '3.18.11', {
  2181. 'checksums': ['bf4ce8fdb21a4da754dffa4c1869efb11f6bdcfaa7f43a1b009b2695f553698d'],
  2182. }),
  2183. ('BCEE', '1.2', {
  2184. 'checksums': ['0b1183458d625ef5dd0962fc77ca1326e77754a2c04be11fb002057abcb65a22'],
  2185. }),
  2186. ('bacr', '1.0.1', {
  2187. 'checksums': ['c847272e2c03fd08ed79b3b739f57fe881af77404b6fd087caa0c398c90ef993'],
  2188. }),
  2189. ('clue', '0.3-57', {
  2190. 'checksums': ['6e369d07b464a9624209a06b5078bf988f01f7963076e946649d76aea0622d17'],
  2191. }),
  2192. ('bdsmatrix', '1.3-3', {
  2193. 'checksums': ['70ea81708c97dedd483a5d3866d2e906fa0e9098ff854c41cf0746fbc8dfad9d'],
  2194. }),
  2195. ('fftwtools', '0.9-8', {
  2196. 'checksums': ['4641c8cd70938c2a8bde0b6da6cf7f83e96175ef52f1ca42ec3920a1dabf1bdb'],
  2197. }),
  2198. ('imagerExtra', '1.3.2', {
  2199. 'checksums': ['0ebfa1eabb89459d774630ab73c7a97a93b9481ea5afc55482975475acebd5b8'],
  2200. }),
  2201. ('MALDIquant', '1.19.3', {
  2202. 'checksums': ['a730327c1f8d053d29e558636736b7b66d0671a009e0004720b869d2c76ff32c'],
  2203. }),
  2204. ('threejs', '0.3.1', {
  2205. 'checksums': ['71750b741672a435ecf749b69c72f0681aa8bb795e317f4e3056d5e33f6d79e8'],
  2206. }),
  2207. ('LaplacesDemon', '16.1.1', {
  2208. # two alternate checksums due updated source tarball with changed package description
  2209. 'checksums': [('779ed1dbfed523a15701b4d5d891d4f1f11ab27518826a8a7725807d4c42bd77',
  2210. '98d30fbc5594f46818632a6795febaa81df12e9598d31d17500bc7300289aea1')],
  2211. }),
  2212. ('rda', '1.0.2-2.1', {
  2213. 'checksums': [('6918b62f51252b57f2c05b99debef6136b370f594dc3ae6466268e4c35578ef8',
  2214. 'eea3a51a2e132a023146bfbc0c384f5373eb3ea2b61743d7658be86a5b04949e')],
  2215. }),
  2216. ('sampling', '2.8', {
  2217. 'checksums': ['356923f35971bb55f7e97b178aede3366374aa3ad3d24a97be765660553bf21a'],
  2218. }),
  2219. ('lda', '1.4.2', {
  2220. 'checksums': ['5606a1e1bc24706988853528023f7a004c725791ae1a7309f1aea2fc6681240f'],
  2221. }),
  2222. ('jiebaRD', '0.1', {
  2223. 'checksums': ['045ee670f5378fe325a45b40fd55136b355cbb225e088cb229f512c51abb4df1'],
  2224. }),
  2225. ('jiebaR', '0.11', {
  2226. 'checksums': ['adde8b0b21c01ec344735d49cd33929511086719c99f8e10dce4ca9479276623'],
  2227. }),
  2228. ('hdm', '0.3.1', {
  2229. 'checksums': ['ba087565e9e0a8ea30a6095919141895fd76b7f3c05a03e60e9e24e602732bce'],
  2230. }),
  2231. ('abe', '3.0.1', {
  2232. 'checksums': ['66d2e9ac78ba64b7d27b22b647fc00378ea832f868e51c18df50d6fffb8029b8'],
  2233. }),
  2234. ('SignifReg', '2.1', {
  2235. 'checksums': ['d21959ce5b1ee20efd1483f6020b57e5f6616bd525af77a7bd325501cc670606'],
  2236. }),
  2237. ('bbmle', '1.0.20', {
  2238. 'checksums': ['6c0fe8df7243f8a039e62d14014065df2002b9329c0e8a3c2df4e7ccf591f1f7'],
  2239. }),
  2240. ('emdbook', '1.3.11', {
  2241. 'checksums': ['f848d4c0a2da50dc8a5af76429d8f9d4960dee3fad1e98f7b507bdfd9b2ca128'],
  2242. }),
  2243. ('SOAR', '0.99-11', {
  2244. 'checksums': ['d5a0fba3664087308ce5295a1d57d10bad149eb9771b4fe67478deae4b7f68d8'],
  2245. }),
  2246. ('rasterVis', '0.47', {
  2247. 'checksums': ['123ebe870895c2ba3a4b64d8a18bccab5287c831fa14bb0fe07f0d7de61e51d3'],
  2248. }),
  2249. ('tictoc', '1.0', {
  2250. 'checksums': ['47da097c1822caa2d8e262381987cfa556ad901131eb96109752742526b2e2fe'],
  2251. }),
  2252. ('ISOcodes', '2019.04.22', {
  2253. 'checksums': ['2386440c3bed8391ee3a029aab86c107d435d0dd6a970236512d7c105d146b6e'],
  2254. }),
  2255. ('stopwords', '1.0', {
  2256. 'checksums': ['9b727a5d827ac8dcfa6329140d294dcf964a06d80132b4ca434330d0ee02b1da'],
  2257. }),
  2258. ('janeaustenr', '0.1.5', {
  2259. 'checksums': ['992f6673653daf7010fe176993a01cd4127d9a88be428da8da7a28241826d6f3'],
  2260. }),
  2261. ('SnowballC', '0.6.0', {
  2262. 'checksums': ['61617d344444235940f5b9ac1cd6b86938e74a8c76791235724b16b755c3f72c'],
  2263. }),
  2264. ('tokenizers', '0.2.1', {
  2265. 'checksums': ['28617cdc5ddef5276abfe14a2642999833322b6c34697de1d4e9d6dc7670dd00'],
  2266. }),
  2267. ('hunspell', '3.0', {
  2268. 'checksums': ['01fb9c87f7cf094aaad3b7098378134f2e503286224351e91d08c00b6ee19857'],
  2269. }),
  2270. ('topicmodels', '0.2-9', {
  2271. 'checksums': ['40770fb7de6ab6bd6e3ef6a0c777fa6db65d0322e67503c26c84ea857ac9a79c'],
  2272. }),
  2273. ('tidytext', '0.2.2', {
  2274. 'checksums': ['188f294cf3177fe6fc85e9b7e16a05211cebeab0e0f7b05a9443416790bf2ec0'],
  2275. }),
  2276. ('splitstackshape', '1.4.8', {
  2277. 'checksums': ['656032c3f1e3dd5b8a3ee19ffcae617e07104c0e342fc3da4d863637a770fe56'],
  2278. }),
  2279. ('grImport2', '0.2-0', {
  2280. 'checksums': ['a102a2d877e42cd4e4e346e5510a77b2f3e57b43ae3c6d5c272fdceb506b00a7'],
  2281. }),
  2282. ('preseqR', '4.0.0', {
  2283. 'checksums': ['0143db473fb9a811f9cf582a348226a5763e62d9857ce3ef4ec41412abb559bc'],
  2284. }),
  2285. ('idr', '1.2', {
  2286. 'checksums': ['8bbfdf82c8c2b5c73eb079127e198b6cb65c437bb36729f502c7bcd6037fdb16'],
  2287. }),
  2288. ('entropy', '1.2.1', {
  2289. 'checksums': ['edb27144b8f855f1ef21de6b93b6b6c5cf7d4f2c3d592bf625e5158c02226f83'],
  2290. }),
  2291. ('kedd', '1.0.3', {
  2292. 'checksums': ['38760abd8c8e8f69ad85ca7992803060acc44ce68358de1763bd2415fdf83c9f'],
  2293. }),
  2294. ('HiddenMarkov', '1.8-11', {
  2295. 'checksums': ['4a1614249eee9f428bc182ea9ced443dff4eafa7babf4259c720e5b4da2d08fa'],
  2296. }),
  2297. ('lmerTest', '3.1-1', {
  2298. 'checksums': ['520ef83e9a7c58e3c5b7175fbda902b747b2e01c24b53714ede81a6a87de5b64'],
  2299. }),
  2300. ('loo', '2.2.0', {
  2301. 'checksums': ['466df60953a89fcb135b32909197c3ff26ecea719c191667faa5747324fb01c3'],
  2302. }),
  2303. ('StanHeaders', '2.21.0-1', {
  2304. 'checksums': ['4e94148af2960f203b208c2b725d8be628ca282c7a1e967a7e6e78aa5eb90d3f'],
  2305. }),
  2306. ('rstan', '2.19.2', {
  2307. 'checksums': ['31e4ceb9c327cd62873225097ffa538c2ac4cb0547c52271e52e4c7652d508da'],
  2308. }),
  2309. ('Rborist', '0.2-3', {
  2310. 'checksums': ['f3b3f953ca99e0d17425ac6ba9a7b1e9d6098343abace575cdb492bca2a9c461'],
  2311. }),
  2312. ('VSURF', '1.1.0', {
  2313. 'checksums': ['eee99e0c441795c2ccb21cc6e0a37b24f580241e494c83e811b726b43469eeab'],
  2314. }),
  2315. ]
  2316. moduleclass = 'lang'