name = 'R' version = '3.6.2' homepage = 'https://www.r-project.org/' description = """R is a free software environment for statistical computing and graphics.""" toolchain = {'name': 'foss', 'version': '2019b'} source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s'] sources = [SOURCE_TAR_GZ] checksums = ['bd65a45cddfb88f37370fbcee4ac8dd3f1aebeebe47c2f968fd9770ba2bbc954'] builddependencies = [ ('pkg-config', '0.29.2'), ] dependencies = [ ('X11', '20190717'), ('Mesa', '19.1.7'), ('libGLU', '9.0.1'), ('cairo', '1.16.0'), ('libreadline', '8.0'), ('ncurses', '6.1'), ('bzip2', '1.0.8'), ('XZ', '5.2.4'), ('zlib', '1.2.11'), ('SQLite', '3.29.0'), ('PCRE', '8.43'), ('libpng', '1.6.37'), # for plotting in R ('libjpeg-turbo', '2.0.3'), # for plottting in R ('LibTIFF', '4.0.10'), ('Java', '11', '', True), ('Tk', '8.6.9'), # for tcltk ('cURL', '7.66.0'), # for RCurl ('libxml2', '2.9.9'), # for XML ('GMP', '6.1.2'), # for igraph ('NLopt', '2.6.1'), # for nloptr ('FFTW', '3.3.8'), # for fftw ('libsndfile', '1.0.28'), # for seewave ('ICU', '66.1'), # for rJava & gdsfmt ('HDF5', '1.10.5'), # for hdf5r ('UDUNITS', '2.2.26'), # for units ('GSL', '2.6'), # for RcppGSL ('ImageMagick', '7.0.9-5'), # for animation # OS dependency should be preferred if the os version is more recent then # this version, it's nice to have an up to date openssl for security # reasons # ('OpenSSL', '1.1.1b'), ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] configopts = "--with-pic --enable-threads --enable-R-shlib" # some recommended packages may fail in a parallel build (e.g. Matrix), and # we're installing them anyway below configopts += " --with-recommended-packages=no" # specify that at least EasyBuild v3.5.0 is required, # since we rely on the updated easyblock for R to configure correctly w.r.t. BLAS/LAPACK easybuild_version = '3.5.0' exts_default_options = { 'source_urls': [ 'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive 'https://cran.r-project.org/src/contrib/', # current version of packages 'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages ], 'source_tmpl': '%(name)s_%(version)s.tar.gz', } # !! order of packages is important !! # packages updated on 16 December 2019 exts_list = [ 'base', 'datasets', 'graphics', 'grDevices', 'grid', 'methods', 'splines', 'stats', 'stats4', 'tools', 'utils', ('Rmpi', '0.6-9', { 'checksums': ['b2e1eac3e56f6b26c7ce744b29d8994ab6507ac88df64ebbb5af439414651ee6'], }), ('abind', '1.4-5', { 'checksums': ['3a3ace5afbcb86e56889efcebf3bf5c3bb042a282ba7cc4412d450bb246a3f2c'], }), ('magic', '1.5-9', { 'checksums': ['fa1d5ef2d39e880f262d31b77006a2a7e76ea38e306aae4356e682b90d6cd56a'], }), ('Rcpp', '1.0.3', { 'checksums': 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['ff043fe13c1991a3b285bed256ff4a9c0ba10bee764225a34b285875b7d69c68'], }), ('BMA', '3.18.11', { 'checksums': ['bf4ce8fdb21a4da754dffa4c1869efb11f6bdcfaa7f43a1b009b2695f553698d'], }), ('BCEE', '1.2', { 'checksums': ['0b1183458d625ef5dd0962fc77ca1326e77754a2c04be11fb002057abcb65a22'], }), ('bacr', '1.0.1', { 'checksums': ['c847272e2c03fd08ed79b3b739f57fe881af77404b6fd087caa0c398c90ef993'], }), ('clue', '0.3-57', { 'checksums': ['6e369d07b464a9624209a06b5078bf988f01f7963076e946649d76aea0622d17'], }), ('bdsmatrix', '1.3-3', { 'checksums': ['70ea81708c97dedd483a5d3866d2e906fa0e9098ff854c41cf0746fbc8dfad9d'], }), ('fftwtools', '0.9-8', { 'checksums': ['4641c8cd70938c2a8bde0b6da6cf7f83e96175ef52f1ca42ec3920a1dabf1bdb'], }), ('imagerExtra', '1.3.2', { 'checksums': ['0ebfa1eabb89459d774630ab73c7a97a93b9481ea5afc55482975475acebd5b8'], }), ('MALDIquant', '1.19.3', { 'checksums': ['a730327c1f8d053d29e558636736b7b66d0671a009e0004720b869d2c76ff32c'], }), ('threejs', '0.3.1', { 'checksums': ['71750b741672a435ecf749b69c72f0681aa8bb795e317f4e3056d5e33f6d79e8'], }), ('LaplacesDemon', '16.1.1', { # two alternate checksums due updated source tarball with changed package description 'checksums': [('779ed1dbfed523a15701b4d5d891d4f1f11ab27518826a8a7725807d4c42bd77', '98d30fbc5594f46818632a6795febaa81df12e9598d31d17500bc7300289aea1')], }), ('rda', '1.0.2-2.1', { 'checksums': [('6918b62f51252b57f2c05b99debef6136b370f594dc3ae6466268e4c35578ef8', 'eea3a51a2e132a023146bfbc0c384f5373eb3ea2b61743d7658be86a5b04949e')], }), ('sampling', '2.8', { 'checksums': ['356923f35971bb55f7e97b178aede3366374aa3ad3d24a97be765660553bf21a'], }), ('lda', '1.4.2', { 'checksums': ['5606a1e1bc24706988853528023f7a004c725791ae1a7309f1aea2fc6681240f'], }), ('jiebaRD', '0.1', { 'checksums': ['045ee670f5378fe325a45b40fd55136b355cbb225e088cb229f512c51abb4df1'], }), ('jiebaR', '0.11', { 'checksums': ['adde8b0b21c01ec344735d49cd33929511086719c99f8e10dce4ca9479276623'], }), ('hdm', '0.3.1', { 'checksums': ['ba087565e9e0a8ea30a6095919141895fd76b7f3c05a03e60e9e24e602732bce'], }), ('abe', '3.0.1', { 'checksums': ['66d2e9ac78ba64b7d27b22b647fc00378ea832f868e51c18df50d6fffb8029b8'], }), ('SignifReg', '2.1', { 'checksums': ['d21959ce5b1ee20efd1483f6020b57e5f6616bd525af77a7bd325501cc670606'], }), ('bbmle', '1.0.20', { 'checksums': ['6c0fe8df7243f8a039e62d14014065df2002b9329c0e8a3c2df4e7ccf591f1f7'], }), ('emdbook', '1.3.11', { 'checksums': ['f848d4c0a2da50dc8a5af76429d8f9d4960dee3fad1e98f7b507bdfd9b2ca128'], }), ('SOAR', '0.99-11', { 'checksums': ['d5a0fba3664087308ce5295a1d57d10bad149eb9771b4fe67478deae4b7f68d8'], }), ('rasterVis', '0.47', { 'checksums': ['123ebe870895c2ba3a4b64d8a18bccab5287c831fa14bb0fe07f0d7de61e51d3'], }), ('tictoc', '1.0', { 'checksums': ['47da097c1822caa2d8e262381987cfa556ad901131eb96109752742526b2e2fe'], }), ('ISOcodes', '2019.04.22', { 'checksums': ['2386440c3bed8391ee3a029aab86c107d435d0dd6a970236512d7c105d146b6e'], }), ('stopwords', '1.0', { 'checksums': ['9b727a5d827ac8dcfa6329140d294dcf964a06d80132b4ca434330d0ee02b1da'], }), ('janeaustenr', '0.1.5', { 'checksums': ['992f6673653daf7010fe176993a01cd4127d9a88be428da8da7a28241826d6f3'], }), ('SnowballC', '0.6.0', { 'checksums': ['61617d344444235940f5b9ac1cd6b86938e74a8c76791235724b16b755c3f72c'], }), ('tokenizers', '0.2.1', { 'checksums': ['28617cdc5ddef5276abfe14a2642999833322b6c34697de1d4e9d6dc7670dd00'], }), ('hunspell', '3.0', { 'checksums': ['01fb9c87f7cf094aaad3b7098378134f2e503286224351e91d08c00b6ee19857'], }), ('topicmodels', '0.2-9', { 'checksums': ['40770fb7de6ab6bd6e3ef6a0c777fa6db65d0322e67503c26c84ea857ac9a79c'], }), ('tidytext', '0.2.2', { 'checksums': ['188f294cf3177fe6fc85e9b7e16a05211cebeab0e0f7b05a9443416790bf2ec0'], }), ('splitstackshape', '1.4.8', { 'checksums': ['656032c3f1e3dd5b8a3ee19ffcae617e07104c0e342fc3da4d863637a770fe56'], }), ('grImport2', '0.2-0', { 'checksums': ['a102a2d877e42cd4e4e346e5510a77b2f3e57b43ae3c6d5c272fdceb506b00a7'], }), ('preseqR', '4.0.0', { 'checksums': ['0143db473fb9a811f9cf582a348226a5763e62d9857ce3ef4ec41412abb559bc'], }), ('idr', '1.2', { 'checksums': ['8bbfdf82c8c2b5c73eb079127e198b6cb65c437bb36729f502c7bcd6037fdb16'], }), ('entropy', '1.2.1', { 'checksums': ['edb27144b8f855f1ef21de6b93b6b6c5cf7d4f2c3d592bf625e5158c02226f83'], }), ('kedd', '1.0.3', { 'checksums': ['38760abd8c8e8f69ad85ca7992803060acc44ce68358de1763bd2415fdf83c9f'], }), ('HiddenMarkov', '1.8-11', { 'checksums': ['4a1614249eee9f428bc182ea9ced443dff4eafa7babf4259c720e5b4da2d08fa'], }), ('lmerTest', '3.1-1', { 'checksums': ['520ef83e9a7c58e3c5b7175fbda902b747b2e01c24b53714ede81a6a87de5b64'], }), ('loo', '2.2.0', { 'checksums': ['466df60953a89fcb135b32909197c3ff26ecea719c191667faa5747324fb01c3'], }), ('StanHeaders', '2.21.0-1', { 'checksums': ['4e94148af2960f203b208c2b725d8be628ca282c7a1e967a7e6e78aa5eb90d3f'], }), ('rstan', '2.19.2', { 'checksums': ['31e4ceb9c327cd62873225097ffa538c2ac4cb0547c52271e52e4c7652d508da'], }), ('Rborist', '0.2-3', { 'checksums': ['f3b3f953ca99e0d17425ac6ba9a7b1e9d6098343abace575cdb492bca2a9c461'], }), ('VSURF', '1.1.0', { 'checksums': ['eee99e0c441795c2ccb21cc6e0a37b24f580241e494c83e811b726b43469eeab'], }), ] moduleclass = 'lang'