Upgrade ELIC_R

foss-2019a/ELIC_R-2-foss-2019a-R-3.6.0.eb

@@ -0,0 +1,112 @@
+easyblock = 'Bundle'
+
+name = 'ELIC_R'
+version = '2'
+versionsuffix = '-R-%(rver)s'
+
+homepage = 'https://gogs.elic.ucl.ac.be'
+description = """This repo provides additional Python and R extensions for ELIC ecosystem."""
+
+toolchain = {'name': 'foss', 'version': '2019a'}
+
+dependencies = [
+    ('R', '3.6.0'),
+    ('GEOS', '3.7.2', '-Python-3.7.2'),
+    ('GDAL', '3.0.0', '-Python-3.7.2'),
+]
+
+exts_default_options = {
+    'source_urls': [
+        'https://cran.r-project.org/src/contrib/Archive/%(name)s',  # package archive
+        'https://cran.r-project.org/src/contrib/',  # current version of packages
+        'https://cran.freestatistics.org/src/contrib',  # mirror alternative for current packages
+    ],
+    'source_tmpl': '%(name)s_%(version)s.tar.gz'
+}
+
+exts_defaultclass = 'RPackage'
+exts_filter = ("R -q --no-save", "library(%(ext_name)s)")
+
+# CRAN packages on which these Bioconductor packages depend are available in R module on which this depends
+# !! order of packages is important !!
+# packages updated on Sept 25th 2018
+exts_list = [
+    ('rgdal', '1.4-4'),
+    ('gdalUtils', '2.0.1.14'),
+    ('ncdf4', '1.16.1'),
+    ('gdtools', '0.1.9'),
+    ('leaflet', '2.0.2'),
+    ('satellite', '1.0.1'),
+    ('sf', '0.7-7'),
+    ('svglite', '1.2.2'),
+    ('leafem', '0.0.1'),
+    ('leafpop', '0.0.1'),
+    ('mapview', '2.7.0'),
+    ('MuMIn', '1.43.6'),
+    ('gstat', '2.0-2'),
+    ('RNetCDF', '1.9-1'),
+    ('automap', '1.0-14'),
+    ('clhs', '0.7-2'),
+    ('rasterVis', '0.45'),
+    ('reporttools', '1.1.2'),
+    ('rgeos', '0.4-3'),
+    ('RandomFieldsUtils', '0.5.3'),
+    ('RandomFields', '3.3.6'),
+    ('rworldmap', '1.3-6'),
+    ('rworldxtra', '1.01'),
+    ('colorRamps', '2.3'),
+    ('mapdata', '2.3.0'),
+    ('mapproj', '1.2.6'),
+    ('RPostgreSQL', '0.6-2'),
+    ('getPass', '0.2-2'),
+    ('stringdist', '0.9.5.2'),
+    ('here', '0.1'),
+    ('svMisc', '1.1.0'),
+    ('networkD3', '0.4'),
+    ('cmsaf', '1.9.5'),
+    ('treemap', '2.4-2'),
+    ('RPostgres', '1.1.1'),
+    ('nzelect', '0.4.0'),
+    ('wordcloud', '2.6'),
+    ('ngram', '3.0.4'),
+    ('rtweet', '0.6.9'),
+    ('lettercase', '0.13.1'),
+    ('xgboost', '0.90.0.2'),
+    ('rts', '1.0-49'),
+    ('RgoogleMaps', '1.4.4'),
+    ('ggmap', '3.0.0'),
+    ('packrat','0.5.0'),
+    ('rsconnect', '0.8.13'),
+    ('rpostgis', '1.4.2'),
+    ('aws.signature', '0.5.2'),
+    ('aws.s3', '0.3.12'),
+    ('geosphere', '1.5-10'),
+    ('fuzzyjoin', '0.1.4'),
+    ('refinr', '0.3.1'),
+    ('x13binary', '1.1.39-2'),
+    ('seasonal', '1.7.0'),
+    ('mitools', '2.4'),
+    ('survey', '3.36'),
+    ('hts','5.1.5'),
+    ('thief', '0.3'),
+    ('forecastHybrid', '4.2.17'),
+    ('ggseas', '0.5.4'),
+    ('sysfonts', '0.8'),
+    ('showtextdb', '2.0'),
+    ('showtext', '0.7'),
+    ('BiocManager', '1.30.4'),
+    ('rvcheck', '0.1.5'),
+    ('scatterpie', '0.1.3'),
+    ('velox', '0.2.0'),
+    ('rlist', '0.4.6.1'),
+    ('measurements', '1.4.0'),
+]
+
+modextrapaths = {'R_LIBS': ''}
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['ncdf4', 'sf', 'mapview'],
+}
+
+moduleclass = 'numlib'