Update ESMValTool

foss-2018b/ESMValTool-2.0.0b1-foss-2018b-Python-3.6.6.eb

@@ -0,0 +1,95 @@
+easyblock = 'Binary'
+
+name = 'ESMValTool'
+version = '2.0.0b1'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'https://www.esmvaltool.org/'
+description = """The Earth System Model eValuation Tool (ESMValTool)
+ is a community diagnostics and performance metrics tool
+ for the evaluation of Earth System Models (ESMs) that
+ allows for routine comparison of single or multiple models,
+ either against predecessor versions or against observations."""
+
+toolchain = {'name': 'foss', 'version': '2018b'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/ESMValGroup/ESMValTool/archive/']
+sources = [{'filename': SOURCE_TAR_GZ, 'download_filename': 'v%(version)s.tar.gz'}]
+
+dependencies = [
+    ('Python', '3.6.6'),
+    ('ELIC', '0.1', versionsuffix), 
+]
+
+exts_defaultclass = 'PythonPackage'
+exts_default_options = {
+    'source_tmpl': '%(name)s-%(version)s.tar.gz',
+}
+
+exts_list = [
+    # Python deps, order is important!
+    ('xarray', '0.13.0', {
+        'source_urls': ['https://pypi.python.org/packages/source/x/xarray/'],
+    }),
+    ('eofs', '1.4.0', {
+        'source_urls': ['https://pypi.python.org/packages/source/e/eofs/'],
+    }),
+    ('PyKE', '1.1.1', {
+        'modulename': 'pyke',
+        'source_tmpl': 'pyke3-%(version)s.zip',
+        'source_urls': ['https://sourceforge.net/projects/%(name)s/files/%(name)s/%(version)s'],
+        'use_pip': True,
+    }),
+    ('scitools-iris', '2.2.1', {
+        'modulename': 'iris',
+        'source_tmpl': 'v%(version)s.tar.gz',
+        'source_urls': ['https://github.com/SciTools/iris/archive/'],
+    }),
+    ('iris-grib', '0.14.1', {
+        'modulename': 'iris_grib',
+        'source_tmpl': 'v%(version)s.tar.gz',
+        'source_urls': ['https://github.com/SciTools/iris-grib/archive/'],
+    }),
+    ('ESMValCore', '2.0.0b2', {
+        'modulename': 'esmvalcore',
+        'source_tmpl': 'v%(version)s.tar.gz',
+        'source_urls': ['https://github.com/ESMValGroup/ESMValCore/archive/'],
+    }),
+]
+
+skipsteps = ['sanitycheck']
+
+modextrapaths = {
+    'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',
+}
+
+postinstallcmds = [
+    "cd %(installdir)s && " +
+    "cp ../../../sources/e/ESMValTool/extensions/v2.0.0b2.tar.gz . && " +
+    "cp ../../../sources/e/ESMF/esmf_7_1_0r_src.tar.gz . && " +
+    "tar xzf v2.0.0b2.tar.gz && " +
+    "tar xzf ESMValTool-%(version)s.tar.gz && " +
+    "tar xzf esmf_7_1_0r_src.tar.gz && " +
+    "cd ESMValTool-%(version)s && " +
+    'PYTHONPATH="%(installdir)s/lib/python%(pyshortver)s/site-packages":"${PYTHONPATH}" && python setup.py install --prefix=%(installdir)s && ' +
+    "cd esmvaltool  && " +
+    "cp -r cmorizers diag_scripts interface_scripts recipes utils %(installdir)s/lib/python%(pyshortver)s/site-packages/ESMValTool-%(version)s-py3.6.egg/esmvaltool && " +
+    "cp config-references.yml %(installdir)s/lib/python%(pyshortver)s/site-packages/ESMValTool-%(version)s-py3.6.egg/esmvaltool && " +
+    "cd %(installdir)s/ESMValCore-2.0.0b2/esmvalcore && " +
+    "cp -r cmor utils preprocessor %(installdir)s/lib/python3.6/site-packages/ESMValCore-2.0.0b1-py3.6.egg/esmvalcore && " +
+    "cd %(installdir)s/esmf/src/addon/ESMPy && " +
+    "python setup.py build --ESMFMKFILE=%(installdir)s/../../ESMF/7.1.0r-foss-2018b/lib/esmf.mk && " +
+    "python setup.py install --prefix=%(installdir)s && " +
+    "cd %(installdir)s && " +
+    'pip install xesmf xgcm --install-option "--prefix=%(installdir)s" && ' +
+    "rm -rf ESMValTool-%(version)s ESMValCore-2.0.0b2 v2.0.0b2.tar.gz esmf esmf_7_1_0r_src.tar.gz"
+]
+
+#modloadmsg = (
+#    "Now call 'esmvaltool -h'\n\n"
+#    "To install ESMValTool in your own directory execute: \n"
+#    "tar zxf $EBROOTESMVALTOOL/ESMValTool-%(version)s.tar.gz\n"
+#)
+
+moduleclass = 'geo'

foss-2018b/ESMValTool-2.0a1-foss-2018b-Python-3.6.6.eb

@@ -1,212 +0,0 @@
-easyblock = 'Binary'
-
-name = 'ESMValTool'
-version = '2.0a1'
-versionsuffix = '-Python-%(pyver)s'
-
-homepage = 'https://www.esmvaltool.org/'
-description = """The Earth System Model eValuation Tool (ESMValTool)
- is a community diagnostics and performance metrics tool
- for the evaluation of Earth System Models (ESMs) that
- allows for routine comparison of single or multiple models,
- either against predecessor versions or against observations."""
-
-toolchain = {'name': 'foss', 'version': '2018b'}
-toolchainopts = {'pic': True}
-
-source_urls = ['https://github.com/ESMValGroup/ESMValTool/archive/']
-sources = [{'filename': SOURCE_TAR_GZ, 'download_filename': 'v%(version)s.tar.gz'}]
-
-dependencies = [
-    ('Python', '3.6.6'),
-    ('NCL', '6.5.0'),
-    ('R', '3.5.1'),
-    ('CDO', '1.9.5'),
-    ('GEOS', '3.6.2', versionsuffix),
-    ('libjpeg-turbo', '2.0.0'),
-    ('libpng', '1.6.34'),
-    ('zlib', '1.2.11'),
-    ('LibTIFF', '4.0.9'),
-    ('freetype', '2.9.1'),
-    ('PROJ', '5.0.0'),
-    ('netCDF', '4.6.1'),
-    ('GDAL', '2.2.3', versionsuffix),
-    ('libmo_unpack', '3.1.2'),
-    ('ecCodes', '2.8.2'),
-]
-
-exts_defaultclass = 'PythonPackage'
-exts_default_options = {
-    'source_tmpl': '%(name)s-%(version)s.tar.gz',
-}
-
-# exts_filter =
-#     ("python -c 'import %(ext_name)s'", '')
-#     ("R -q --no-save", "library(%(ext_name)s)"),
-
-exts_classmap = {'ncdf4': 'RPackage'}
-exts_list = [
-    # Python deps, order is important!
-    ('olefile', '0.45.1', {
-        'source_tmpl': '%(name)s-%(version)s.zip',
-        'source_urls': ['https://pypi.python.org/packages/source/o/olefile/'],
-        'checksums': ['2b6575f5290de8ab1086f8c5490591f7e0885af682c7c1793bdaf6e64078d385'],
-    }),
-    ('Pillow', '4.3.0', {
-        'modulename': 'PIL',
-        'source_urls': ['https://pypi.python.org/packages/source/p/Pillow/'],
-        'checksums': ['a97c715d44efd5b4aa8d739b8fad88b93ed79f1b33fc2822d5802043f3b1b527'],
-    }),
-    ('pyproj', '1.9.5.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/pyproj/'],
-        'checksums': ['53fa54c8fa8a1dfcd6af4bf09ce1aae5d4d949da63b90570ac5ec849efaf3ea8'],
-    }),
-    ('pyshp', '1.2.12', {
-        'modulename': 'shapefile',
-        'source_urls': ['https://pypi.python.org/packages/source/p/pyshp/'],
-        'checksums': ['8dcd65e0aa2aa2951527ddb7339ea6e69023543d8a20a73fc51e2829b9ed6179'],
-    }),
-    ('chardet', '3.0.4', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/chardet/'],
-        'checksums': ['84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae'],
-    }),
-    ('urllib3', '1.22', {
-        'source_urls': ['https://pypi.python.org/packages/source/u/urllib3/'],
-        'checksums': ['cc44da8e1145637334317feebd728bd869a35285b93cbb4cca2577da7e62db4f'],
-    }),
-    ('certifi', '2018.4.16', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/certifi/'],
-        'checksums': ['13e698f54293db9f89122b0581843a782ad0934a4fe0172d2a980ba77fc61bb7'],
-    }),
-    ('requests', '2.18.4', {
-        'source_urls': ['https://pypi.python.org/packages/source/r/requests/'],
-        'checksums': ['9c443e7324ba5b85070c4a818ade28bfabedf16ea10206da1132edaa6dda237e'],
-    }),
-    ('OWSLib', '0.16.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/o/OWSLib/'],
-        'checksums': ['ec95a5e93c145a5d84b0074b9ea27570943486552a669151140debf08a100554'],
-    }),
-    ('basemap', '1.2.0rel', {
-        'modulename': 'mpl_toolkits.basemap',
-        'source_tmpl': 'v%(version)s.tar.gz',
-        'source_urls': ['https://github.com/matplotlib/basemap/archive'],
-    }),
-    ('netCDF4', '1.3.1', {
-        'modulename': 'netCDF4',
-        'source_urls': ['https://pypi.python.org/packages/source/n/netCDF4/'],
-        'checksums': ['570ea59992aa6d98a9b672c71161d11ba5683f787da53446086077470a869957'],
-    }),
-    ('geoval', '0.1.5', {
-        'source_urls': ['https://pypi.python.org/packages/source/g/geoval/'],
-        'checksums': ['7da4a1879f78bb7aac2d41b5c1ee360ff74087bf857c81c532deb8cc31feb36e'],
-    }),
-    ('cdo', '1.3.6', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cdo/'],
-        'checksums': ['b167efbbac7d0a6cbf74f5d211255705c73245f7c2590b6d9eb634347d8b2c1f'],
-    }),
-    ('Shapely', '1.6.4.post1', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/Shapely/'],
-        'checksums': ['30df7572d311514802df8dc0e229d1660bc4cbdcf027a8281e79c5fc2fcf02f2'],
-    }),
-    ('Cartopy', '0.16.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/Cartopy/'],
-        'checksums': ['f23dffa101f43dd91e866a49ebb5f5048be2a24ab8a921a5c07edabde746d9a4'],
-    }),
-    ('dask', '0.17.4', {
-        'source_urls': ['https://pypi.python.org/packages/source/d/dask/'],
-        'checksums': ['c111475a3d1f8cba41c8094e1fb1831c65015390dcef0308042a11a9606a2f6d'],
-    }),
-    ('PyKE', '1.1.1', {
-        'source_tmpl': 'pyke-1.1.1.zip',
-        'source_urls': ['http://download.sourceforge.net/pyke'],
-        'checksums': ['b0b294f435c6e6d2d4a80badf57d92cb66814dfe21e644a521901209e6a3f8ae'],
-    }),
-    ('cf_units', '1.2.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cf_units/'],
-        'checksums': ['abdd2a0937b958322f7ff7ec6866e80f08603c60aa06cef5766b6512c750028a'],
-    }),
-    ('pyugrid', '0.3.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/pyugrid/'],
-        'checksums': ['eddadc1e88c0e801f780b1e6f636fbfc00e3d14cdab82b43300fde0918310053'],
-    }),
-    ('mo_pack', '0.2.0', {
-        'source_tmpl': 'v%(version)s.tar.gz',
-        'source_urls': ['https://github.com/SciTools/mo_pack/archive/'],
-        'checksums': ['4aa70e1f846b666670843bc2514435dedf7393203e88abaf74d48f8f2717a726'],
-    }),
-    ('cycler', '0.10.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cycler/'],
-        'checksums': ['cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8'],
-    }),
-    ('singledispatch', '3.4.0.3', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/singledispatch/'],
-        'checksums': ['5b06af87df13818d14f08a028e42f566640aef80805c3b50c5056b086e3c2b9c'],
-    }),
-    ('backports_abc', '0.5', {
-        'source_urls': ['https://pypi.python.org/packages/source/b/backports_abc/'],
-        'checksums': ['033be54514a03e255df75c5aee8f9e672f663f93abb723444caec8fe43437bde'],
-    }),
-    ('tornado', '4.5.3', {
-        'source_urls': ['https://pypi.python.org/packages/source/t/tornado/'],
-        'checksums': ['6d14e47eab0e15799cf3cdcc86b0b98279da68522caace2bd7ce644287685f0a'],
-    }),
-    ('matplotlib', '1.5.3', {
-        'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib/'],
-        'checksums': ['a0a5dc39f785014f2088fed2c6d2d129f0444f71afbb9c44f7bdf1b14d86ebbc'],
-    }),
-    ('toolz', '0.9.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/t/toolz/'],
-        'checksums': ['929f0a7ea7f61c178bd951bdae93920515d3fbdbafc8e6caf82d752b9b3b31c9'],
-    }),
-    ('patsy', '0.5.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/patsy/'],
-        'checksums': ['e05f38d5c38c8d216f0cc2b765b1069b433c92d628b954fb2fee68d13e42883b'],
-    }),
-    ('statsmodels', '0.9.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/statsmodels/'],
-        'checksums': ['6461f93a842c649922c2c9a9bc9d9c4834110b89de8c4af196a791ab8f42ba3b'],
-    }),
-    ('cftime', '1.0.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cftime/'],
-        'checksums': ['f62fe79ed2ad38f4211477e59f6f045c91278351f4ce7578e33ddf52fb121ea8'],
-    }),
-    ('nc-time-axis', '1.1.0', {
-        'modulename': 'nc_time_axis',
-        'source_urls': ['https://pypi.python.org/packages/source/n/nc-time-axis/'],
-        'checksums': ['ea9d4f7f9e9189c96f7d320235ac6c4be7f63dc5aa256b3ee5d5cca5845e6e26'],
-    }),
-    # R extension
-    ('ncdf4', '1.16', {
-        'source_tmpl': '%(name)s_%(version)s.tar.gz',
-        'source_urls': [
-            'http://cran.r-project.org/src/contrib/Archive/ncdf4',
-            'http://cran.r-project.org/src/contrib/',
-            'http://cran.freestatistics.org/src/contrib',
-        ],
-        'checksums': ['edd5731a805bbece3a8f6132c87c356deafc272351e1dd07256ca00574949253'],
-    }),
-    ('scitools-iris', '2.0.0', {
-        'modulename': 'iris',
-        'source_tmpl': 'v%(version)s.tar.gz',
-        'source_urls': ['https://github.com/SciTools/iris/archive/'],
-        'checksums': ['8605ab92c67d622e83fff6d7169fe154d9f8610edd8463b697b574884c158ba2'],
-    }),
-    ('iris-grib', '0.12.0', {
-        'modulename': 'iris_grib',
-        'source_tmpl': 'v%(version)s.tar.gz',
-        'source_urls': ['https://github.com/SciTools/iris-grib/archive/'],
-        'checksums': ['c2e92d25d8bfd2ddff22ae47c4532c884678bac6ea0d935367eced051ae08bb3'],
-    }),
-]
-
-modextrapaths = {
-    'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',
-    'R_LIBS': '',
-}
-
-modloadmsg = (
-    "To install ESMValTool in your directory execute: "
-    "tar zxf $EBROOTESMVALTOOL/ESMValTool-%(version)s.tar.gz\n"
-)
-
-moduleclass = 'geo'