|
@@ -13,7 +13,7 @@ rmdir easyconfigs; git clone ssh://egit/pbarriat/easyconfigs.git
|
|
|
## Requirements
|
|
|
|
|
|
* openSUSE : `gcc-c++ patch libopenssl-devel gperf`
|
|
|
-* CentOS : `openssl-devel libibverbs-devel autoconf automake binutils bison flex gcc gcc-c++ gettext libtool make patch pkgconfig bzip2 unzip jq-devel v8-devel postgresql-devel unixODBC*`
|
|
|
+* CentOS : `openssl-devel libibverbs-devel autoconf automake binutils bison flex gcc gcc-c++ gettext libtool make patch pkgconfig bzip2 unzip jq-devel v8-devel postgresql-devel tcsh unixODBC*`
|
|
|
* ubuntu :
|
|
|
|
|
|
```bash
|
|
@@ -84,9 +84,9 @@ Fix `/opt/modules/all/GEOS/3.6.2-foss-2017b-Python-2.7.14.lua` by adding `setenv
|
|
|
module load GDAL/2.2.3-foss-2017b-Python-2.7.14 GEOS/3.6.2-foss-2017b-Python-2.7.14
|
|
|
pip install --upgrade pip
|
|
|
|
|
|
-pip install cffi vsc-base vsc-install
|
|
|
+pip install vsc-base vsc-install
|
|
|
|
|
|
-pip install geos netcdf4 cdo geoval cartopy iris matplotlib ipython pyproj scikit-image pillow pandas xarray joblib six gdal shapely rasterio geopandas pytest boto3 salem motionless progressbar2 fiona geopandas configobj https://github.com/matplotlib/basemap/archive/v1.1.0.tar.gz
|
|
|
+pip install cffi geos netcdf4 cdo geoval cartopy iris matplotlib ipython pyproj scikit-image pillow pandas xarray joblib six gdal shapely rasterio geopandas pytest boto3 salem motionless progressbar2 fiona geopandas configobj https://github.com/matplotlib/basemap/archive/v1.1.0.tar.gz
|
|
|
|
|
|
pip install spyder python_qt_binding python-qt Qt.py ecmwf-api-client pybufr-ecmwf
|
|
|
|
|
@@ -108,7 +108,7 @@ Fix `/opt/modules/all/Python/2.7.14-foss-2017b.lua` by adding:
|
|
|
Check if you have an issue with Python3:
|
|
|
|
|
|
```bash
|
|
|
-module load Python/3.6.1-intel-2018
|
|
|
+module load Python/3.6.3-foss-2017b
|
|
|
pip
|
|
|
```
|
|
|
|
|
@@ -117,17 +117,20 @@ If yes:
|
|
|
```bash
|
|
|
pip install -Iv pysha3==0.3
|
|
|
pip
|
|
|
-vimdiff /opt/software/Python/3.6.1-intel-2018/lib/python3.6/hashlib.py utils/hashlib.py
|
|
|
+vimdiff /opt/software/Python/3.6.3-foss-2017b/lib/python3.6/hashlib.py utils/hashlib.py
|
|
|
```
|
|
|
|
|
|
## Python3 packages
|
|
|
|
|
|
-Fix `/opt/modules/all/GEOS/3.6.1-intel-2018-Python-3.6.1.lua` by adding `setenv("GEOS_DIR", root)`
|
|
|
+Fix `/opt/modules/all/GEOS/3.6.2-foss-2017b-Python-3.6.3.lua` by adding `setenv("GEOS_DIR", root)`
|
|
|
|
|
|
```bash
|
|
|
-module load GDAL/2.2.0-intel-2018-Python-3.6.1 PROJ
|
|
|
+module load GDAL/2.2.3-foss-2017b-Python-3.6.3 PROJ
|
|
|
+pip install --upgrade pip
|
|
|
+
|
|
|
+pip install cffi geos netcdf4 cdo geoval cartopy matplotlib ipython pyproj scikit-image pillow pandas xarray joblib six gdal shapely rasterio geopandas pytest boto3 salem motionless progressbar2 fiona geopandas configobj https://github.com/matplotlib/basemap/archive/v1.1.0.tar.gz
|
|
|
|
|
|
-pip install geos netcdf4 cdo geoval cartopy matplotlib ipython pyproj scikit-image pillow pandas xarray joblib six gdal shapely rasterio geopandas pytest boto3 salem motionless progressbar2 fiona geopandas configobj https://github.com/matplotlib/basemap/archive/v1.1.0.tar.gz
|
|
|
+pip install spyder python_qt_binding python-qt Qt.py ecmwf-api-client pybufr-ecmwf
|
|
|
|
|
|
module purge
|
|
|
```
|