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- #!/bin/bash
- #==========================================================
- #
- # Configuration file for
- #
- # OCEAN MONITORING for NEMO v3.6 of EC-Earth 3.2 beta tunning on 75 levels
- #
- # Machine: MareNostrum@BSC
- #
- # L. Brodeau, November 2016
- #
- #===========================================================
- export CONF=ORCA1.L75 ; # horizontal global ORCA configuration
- export NBL=75 ; # number of levels
- export HOST=MARENOSTRUM ; # this has no importance at all, it will just become an "info" on the web-page!
- export EXTRA_CONF="NEMO 3.6 + LIM 3 (EC-Earth 3.2b_tuning)" ; # // same here ...
- # File system / path on which most netcdf data will be read:
- export STORE_DIR="/gpfs/scratch/bsc32/bsc32325"
- # Path to directory containing some 2D and 3D climatologies on the relevant ORCA grid:
- export CONF_INI_DIR="/gpfs/projects/bsc32/bsc32325/ORCA1/ORCA1-I/barakuda_clim"
- # In what directory of the local machine to save the diagnostics:
- export DIAG_DIR="${STORE_DIR}/barakuda/${CONF}_ece32"
- # --- only for problematic hosts ----
- module add NCO/4.2.3
- module add PYTHON/2.7.3
- # -----------------------------------
- export PYTHON_HOME="/apps/PYTHON/2.7.3" ; # HOME to python distribution with matplotlib and basemap !
- # Is it an ec-earth run?
- export ece_run=2 ; # 0 => not an EC-Earth run, it's a "pure" ocean-only NEMO run done from traditional NEMO setup
- # # 1 => it's an OCEAN-ONLY EC-Earth run done from a EC-Earth setup
- # # 2 => it's a COUPLED EC-Earth run
- # # Both 1 and 2 imply that NEMO files are stored in something like
- # # ${STORE_DIR}/<RUN>/output/nemo/<YYY>
- # # where YYY starts from '001' to
- # # If you select '2', make sure 'cdo' is available and working!!!
- #
- export Y_INI_EC=1990 ; # initial year if ec-earth run...
- export TRES_IFS=255 ; # spectral resolution for IFS, ex: T255 => TRES_IFS=255
- ###--- end EC-Earth IFS relate section ---
- export ATMO_INFO="IFS T${TRES_IFS}" ; # Name of atmospheric model or forcing used (ex: COREv2, DFS5.2, IFS T255, ect...)
- # List of suffixed of files that have been saved by NEMO and that are needed for the diags:
- export NEMO_SAVED_FILES="grid_T grid_U grid_V icemod SBC"
- # Directory structure in which to find NEMO output file (use <ORCA> and <RUN>):
- export NEMO_OUT_STRCT="${STORE_DIR}/run_ece/<RUN>/output/nemo"
- export TSTAMP="1m" ; # output time-frequency stamp as in NEMO output files...
- # How does the nemo files prefix looks like
- # Everything before "<year_related_info>_grid_<X>" or "<year_related_info>_icemod"
- # use <ORCA>, <RUN> and <TSTAMP>=> Ex: export NEMO_FILE_PREFIX="<ORCA>-<RUN>_<TSTAMP>_"
- export NEMO_FILE_PREFIX="<RUN>_<TSTAMP>_"
- # => should get rid of TSTAMP actually...
- # Temporary file system (scratch) on which to perform the job you can use <JOB_ID> if scracth depends on JOB ID:
- #export SCRATCH="/scratch/local/<JOB_ID>" ; # triolith
- export SCRATCH="/scratch/tmp"
- ####### NEMO => what fields in what files ??? ############
- # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- # => depends on the XIOS *.xml setup you used...
- # => always specify a string for the NN_* variables
- # even when missing from your files (ex: NN_MLD="xx")
- #
- # State variables and others in grid_T files:
- export NN_SST="sosstsst"
- export NN_SSS="sosaline"
- export NN_SSH="sossheig"
- export NN_T="votemper"
- export NN_S="vosaline"
- export NN_MLD="mldr10_1"
- #
- # State variables and others in grid_U files:
- export NN_U="vozocrtx"
- export NN_TAUX="sozotaux"
- export NN_U_EIV="0" ; # 0 => ignore
- # State variables and others in grid_V files:
- export NN_V="vomecrty"
- export NN_TAUY="sometauy"
- export NN_V_EIV="0" ; # 0 => ignore
- #
- # Sea-ice fields:
- export FILE_ICE_SUFFIX="icemod" ; # in what file type extension to find ice fields
- export NN_ICEF="siconc" ; # name of ice fraction in "FILE_ICE_SUFFIX" file...
- export NN_ICET="sivolu" ; # ice thickness or rather volume...
- #
- # Surface fluxes:
- export FILE_FLX_SUFFIX="SBC" ; # in what file type extension to find surface fluxes
- export NN_FWF="empmr" ; # name of net freshwater flux (E-P-R) in "FILE_FLX_SUFFIX" file...
- export NN_EMP="emp_oce" ; # name of E-P in "FILE_FLX_SUFFIX" file...
- export NN_P="precip" ; # name of total precipitation (solid+liquid) in "FILE_FLX_SUFFIX" file...
- export NN_RNF="runoffs" ; # name of continental runoffs in "FILE_FLX_SUFFIX" file...
- export NN_CLV="calving" ; # calving from icebergs in "FILE_FLX_SUFFIX" file...
- export NN_E="evapo" ; # name of total evaporation in "FILE_FLX_SUFFIX" file...
- export NN_QNET="qt" ; # name of total net surface heat flux in "FILE_FLX_SUFFIX" file...
- export NN_QSOL="qsr" ; # name of net surface solar flux in "FILE_FLX_SUFFIX" file...
- #
- ################################################################################################
- # Land-sea mask and basins files:
- export MM_FILE=/gpfs/projects/bsc32/bsc32325/ORCA1/ec-earth3.2/mesh_mask.nc4
- export BM_FILE=/gpfs/projects/bsc32/bsc32325/ORCA1/ec-earth3.2/basin_mask.nc4
- # 3D monthly climatologies of potential temperature and salinity (can be those you used for the NEMO run):
- export F_T_CLIM_3D_12=${CONF_INI_DIR}/thetao_1degx1deg-ORCA1.L75_WOA2009_monthly_LB_20160223.nc4
- export F_S_CLIM_3D_12=${CONF_INI_DIR}/so_1degx1deg-ORCA1.L75_WOA2009_monthly_LB_20160223.nc4
- export SST_CLIM_12=${CONF_INI_DIR}/tos_180x360-ORCA1_Reynolds_monthly_mean1982-2005.nc4
- export NN_T_CLIM="thetao"
- export NN_S_CLIM="so"
- export NN_SST_CLIM="tos"
- export ICE_CLIM_12=${CONF_INI_DIR}/ice_cover_180x360-ORCA1_Hurrell_monthly_mean1980-1999.nc4
- export NN_ICEF_CLIM="ice_cover"
- # A text file where the cross sections (to compute transports) are defined :
- export TRANSPORT_SECTION_FILE="${BARAKUDA_ROOT}/data/transportiz_ORCA1.dat"
- # For transport by sigma-class:
- export DENSITY_SECTION_FILE="${BARAKUDA_ROOT}/data/dens_section_ORCA1.dat"
- # Files with the list of rectangular domains to "analyze" more closely:
- export FILE_DEF_BOXES="${BARAKUDA_ROOT}/data/def_boxes_convection_ORCA1.txt"
- export FILE_DMV_BOXES="${BARAKUDA_ROOT}/data/def_boxes_convection_ORCA1.txt"
- # In what format should figures be produced ('png' recommanded, 'svg' works):
- export FIG_FORM="png"
- # About remote HOST to send/install HTML pages to:
- export ihttp=0 ; # do we export on a remote http server (1) or keep on the local machine (0)
- export RHOST=whitehouse.gov.org ; # remote host to send diagnostic page to///
- export RUSER=donald ; # username associated to remote host (for file export)
- export RWWWD=/data/www/barakuda/ec-earth_3.2b ; # directory of the local or remote host to send the diagnostic page to
- #########################
- # Diags to be performed #
- #########################
- # Movies of SST and SSS compared to OBS:
- export i_do_movi=1
- # Basic 3D and surface averages:
- export i_do_mean=1
- # IFS surface fluxes of heat and freshwater
- export i_do_ifs_flx=1 ; # only relevant when ece_run=2...
- # AMOC:
- export i_do_amoc=1
- export LMOCLAT="20-23 30-33 40-43 45-48 50-53" ; # List of latitude bands to look in for max of AMOC
- # Transport of mass, heat and salt through specified sections (into TRANSPORT_SECTION_FILE):
- export i_do_trsp=1 ; # transport of mass, heat and salt through specified sections
- # # i_do_trsp=2 => treat also different depths range!
- z1_trsp=100 ; # first depth: i_do_trsp must be set to 2
- z2_trsp=1000 ; # second depth: i_do_trsp must be set to 2
- # Meridional heat/salt transport (advective)
- export i_do_mht=1
- # Transport by sigma class
- export i_do_sigt=1
- # Sea-ice diags
- export i_do_ice=1 ; # Sea-ice diags
- # Budget on pre-defined (FILE_DEF_BOXES) rectangular domains:
- export i_do_bb=1 ; # Budget and other stuffs on a given rectangular box!
- # # => needs file FILE_DEF_BOXES !!!
- # => produces time-series f(t) (mean of 2D fields)
- # Vertical profiles on of box-averaged as a function of time...
- export i_do_box_TS_z=1 ; # do sigma vert. profiles on given boxes... # 1 => no figures, 2 => figures
- # # => needs file FILE_DEF_BOXES !!!
- # => produces time-series f(t,z)
- # Deep Mixed volume in prescribed boxes:
- export i_do_dmv=0
- export MLD_CRIT="1000,725,500"
- # User-defined meridional or zonal cross sections (for temperature and salinity)
- # => TS_SECTION_FILE must be defined!
- export i_do_sect=1
- export TS_SECTION_FILE="${BARAKUDA_ROOT}/data/TS_sections.dat"
- # BETA / TESTING / NERDY (at your own risks...):
- #
- export i_do_ssx_box=0 ; # zoom on given boxes (+spatially-averaged values) for surface properties
- # # boxes defined into barakuda_orca.py ...
- # Some nerdy stuffs about the critical depth in prescribed boxes:
- export i_do_zcrit=0
- # Fresh-water transport associated to sea-ice transport
- # => must compile cdficeflux.x but depends on more recent CDFTOOLS module...
- export i_do_icet=0 ; # treat sea-ice volume transport!
- export TRANSPORT_ICE_SECTION_FILE="${BARAKUDA_ROOT}/data/transportiz_ORCA1_ARCTIC.dat"
- export i_do_amo=0 ; # buit a SST time serie usable to build Atlantic Multidecadal Oscilation index
- # Place for potential specific host-related survival tricks:
- #========================== Marenostrum @ BSC =========================================================
- ### Shouldn't be needed elsewhere than MareNostrum, where it's a hello to have CDO working...
- ## => Only if you specified ece_run=2 and i_do_ifs_flx
- export MOD_CDO="gcc/4.7.2 intel/13.0.1 openmpi/1.8.1 NETCDF/4.1.3 HDF5/1.8.10 UDUNITS/2.1.24 CDO/1.7.0"
- #=======================================================================================================
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