#!/bin/bash #========================================================== # # Configuration file for # # OCEAN MONITORING for NEMO v3.6 of EC-Earth 3.2 beta tunning on 75 levels # # Machine: MareNostrum@BSC # # L. Brodeau, November 2016 # #=========================================================== export CONF=ORCA1.L75 ; # horizontal global ORCA configuration export NBL=75 ; # number of levels export HOST=MARENOSTRUM ; # this has no importance at all, it will just become an "info" on the web-page! export EXTRA_CONF="NEMO 3.6 + LIM 3 (EC-Earth 3.2b_tuning)" ; # // same here ... # File system / path on which most netcdf data will be read: export STORE_DIR="/gpfs/scratch/bsc32/bsc32325" # Path to directory containing some 2D and 3D climatologies on the relevant ORCA grid: export CONF_INI_DIR="/gpfs/projects/bsc32/bsc32325/ORCA1/ORCA1-I/barakuda_clim" # In what directory of the local machine to save the diagnostics: export DIAG_DIR="${STORE_DIR}/barakuda/${CONF}_ece32" # --- only for problematic hosts ---- module add NCO/4.2.3 module add PYTHON/2.7.3 # ----------------------------------- export PYTHON_HOME="/apps/PYTHON/2.7.3" ; # HOME to python distribution with matplotlib and basemap ! # Is it an ec-earth run? export ece_run=2 ; # 0 => not an EC-Earth run, it's a "pure" ocean-only NEMO run done from traditional NEMO setup # # 1 => it's an OCEAN-ONLY EC-Earth run done from a EC-Earth setup # # 2 => it's a COUPLED EC-Earth run # # Both 1 and 2 imply that NEMO files are stored in something like # # ${STORE_DIR}//output/nemo/ # # where YYY starts from '001' to # # If you select '2', make sure 'cdo' is available and working!!! # export Y_INI_EC=1990 ; # initial year if ec-earth run... export TRES_IFS=255 ; # spectral resolution for IFS, ex: T255 => TRES_IFS=255 ###--- end EC-Earth IFS relate section --- export ATMO_INFO="IFS T${TRES_IFS}" ; # Name of atmospheric model or forcing used (ex: COREv2, DFS5.2, IFS T255, ect...) # List of suffixed of files that have been saved by NEMO and that are needed for the diags: export NEMO_SAVED_FILES="grid_T grid_U grid_V icemod SBC" # Directory structure in which to find NEMO output file (use and ): export NEMO_OUT_STRCT="${STORE_DIR}/run_ece//output/nemo" export TSTAMP="1m" ; # output time-frequency stamp as in NEMO output files... # How does the nemo files prefix looks like # Everything before "_grid_" or "_icemod" # use , and => Ex: export NEMO_FILE_PREFIX="-__" export NEMO_FILE_PREFIX="__" # => should get rid of TSTAMP actually... # Temporary file system (scratch) on which to perform the job you can use if scracth depends on JOB ID: #export SCRATCH="/scratch/local/" ; # triolith export SCRATCH="/scratch/tmp" ####### NEMO => what fields in what files ??? ############ # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # => depends on the XIOS *.xml setup you used... # => always specify a string for the NN_* variables # even when missing from your files (ex: NN_MLD="xx") # # State variables and others in grid_T files: export NN_SST="sosstsst" export NN_SSS="sosaline" export NN_SSH="sossheig" export NN_T="votemper" export NN_S="vosaline" export NN_MLD="mldr10_1" # # State variables and others in grid_U files: export NN_U="vozocrtx" export NN_TAUX="sozotaux" export NN_U_EIV="0" ; # 0 => ignore # State variables and others in grid_V files: export NN_V="vomecrty" export NN_TAUY="sometauy" export NN_V_EIV="0" ; # 0 => ignore # # Sea-ice fields: export FILE_ICE_SUFFIX="icemod" ; # in what file type extension to find ice fields export NN_ICEF="siconc" ; # name of ice fraction in "FILE_ICE_SUFFIX" file... export NN_ICET="sivolu" ; # ice thickness or rather volume... # # Surface fluxes: export FILE_FLX_SUFFIX="SBC" ; # in what file type extension to find surface fluxes export NN_FWF="empmr" ; # name of net freshwater flux (E-P-R) in "FILE_FLX_SUFFIX" file... export NN_EMP="emp_oce" ; # name of E-P in "FILE_FLX_SUFFIX" file... export NN_P="precip" ; # name of total precipitation (solid+liquid) in "FILE_FLX_SUFFIX" file... export NN_RNF="runoffs" ; # name of continental runoffs in "FILE_FLX_SUFFIX" file... export NN_CLV="calving" ; # calving from icebergs in "FILE_FLX_SUFFIX" file... export NN_E="evapo" ; # name of total evaporation in "FILE_FLX_SUFFIX" file... export NN_QNET="qt" ; # name of total net surface heat flux in "FILE_FLX_SUFFIX" file... export NN_QSOL="qsr" ; # name of net surface solar flux in "FILE_FLX_SUFFIX" file... # ################################################################################################ # Land-sea mask and basins files: export MM_FILE=/gpfs/projects/bsc32/bsc32325/ORCA1/ec-earth3.2/mesh_mask.nc4 export BM_FILE=/gpfs/projects/bsc32/bsc32325/ORCA1/ec-earth3.2/basin_mask.nc4 # 3D monthly climatologies of potential temperature and salinity (can be those you used for the NEMO run): export F_T_CLIM_3D_12=${CONF_INI_DIR}/thetao_1degx1deg-ORCA1.L75_WOA2009_monthly_LB_20160223.nc4 export F_S_CLIM_3D_12=${CONF_INI_DIR}/so_1degx1deg-ORCA1.L75_WOA2009_monthly_LB_20160223.nc4 export SST_CLIM_12=${CONF_INI_DIR}/tos_180x360-ORCA1_Reynolds_monthly_mean1982-2005.nc4 export NN_T_CLIM="thetao" export NN_S_CLIM="so" export NN_SST_CLIM="tos" export ICE_CLIM_12=${CONF_INI_DIR}/ice_cover_180x360-ORCA1_Hurrell_monthly_mean1980-1999.nc4 export NN_ICEF_CLIM="ice_cover" # A text file where the cross sections (to compute transports) are defined : export TRANSPORT_SECTION_FILE="${BARAKUDA_ROOT}/data/transportiz_ORCA1.dat" # For transport by sigma-class: export DENSITY_SECTION_FILE="${BARAKUDA_ROOT}/data/dens_section_ORCA1.dat" # Files with the list of rectangular domains to "analyze" more closely: export FILE_DEF_BOXES="${BARAKUDA_ROOT}/data/def_boxes_convection_ORCA1.txt" export FILE_DMV_BOXES="${BARAKUDA_ROOT}/data/def_boxes_convection_ORCA1.txt" # In what format should figures be produced ('png' recommanded, 'svg' works): export FIG_FORM="png" # About remote HOST to send/install HTML pages to: export ihttp=0 ; # do we export on a remote http server (1) or keep on the local machine (0) export RHOST=whitehouse.gov.org ; # remote host to send diagnostic page to/// export RUSER=donald ; # username associated to remote host (for file export) export RWWWD=/data/www/barakuda/ec-earth_3.2b ; # directory of the local or remote host to send the diagnostic page to ######################### # Diags to be performed # ######################### # Movies of SST and SSS compared to OBS: export i_do_movi=1 # Basic 3D and surface averages: export i_do_mean=1 # IFS surface fluxes of heat and freshwater export i_do_ifs_flx=1 ; # only relevant when ece_run=2... # AMOC: export i_do_amoc=1 export LMOCLAT="20-23 30-33 40-43 45-48 50-53" ; # List of latitude bands to look in for max of AMOC # Transport of mass, heat and salt through specified sections (into TRANSPORT_SECTION_FILE): export i_do_trsp=1 ; # transport of mass, heat and salt through specified sections # # i_do_trsp=2 => treat also different depths range! z1_trsp=100 ; # first depth: i_do_trsp must be set to 2 z2_trsp=1000 ; # second depth: i_do_trsp must be set to 2 # Meridional heat/salt transport (advective) export i_do_mht=1 # Transport by sigma class export i_do_sigt=1 # Sea-ice diags export i_do_ice=1 ; # Sea-ice diags # Budget on pre-defined (FILE_DEF_BOXES) rectangular domains: export i_do_bb=1 ; # Budget and other stuffs on a given rectangular box! # # => needs file FILE_DEF_BOXES !!! # => produces time-series f(t) (mean of 2D fields) # Vertical profiles on of box-averaged as a function of time... export i_do_box_TS_z=1 ; # do sigma vert. profiles on given boxes... # 1 => no figures, 2 => figures # # => needs file FILE_DEF_BOXES !!! # => produces time-series f(t,z) # Deep Mixed volume in prescribed boxes: export i_do_dmv=0 export MLD_CRIT="1000,725,500" # User-defined meridional or zonal cross sections (for temperature and salinity) # => TS_SECTION_FILE must be defined! export i_do_sect=1 export TS_SECTION_FILE="${BARAKUDA_ROOT}/data/TS_sections.dat" # BETA / TESTING / NERDY (at your own risks...): # export i_do_ssx_box=0 ; # zoom on given boxes (+spatially-averaged values) for surface properties # # boxes defined into barakuda_orca.py ... # Some nerdy stuffs about the critical depth in prescribed boxes: export i_do_zcrit=0 # Fresh-water transport associated to sea-ice transport # => must compile cdficeflux.x but depends on more recent CDFTOOLS module... export i_do_icet=0 ; # treat sea-ice volume transport! export TRANSPORT_ICE_SECTION_FILE="${BARAKUDA_ROOT}/data/transportiz_ORCA1_ARCTIC.dat" export i_do_amo=0 ; # buit a SST time serie usable to build Atlantic Multidecadal Oscilation index # Place for potential specific host-related survival tricks: #========================== Marenostrum @ BSC ========================================================= ### Shouldn't be needed elsewhere than MareNostrum, where it's a hello to have CDO working... ## => Only if you specified ece_run=2 and i_do_ifs_flx export MOD_CDO="gcc/4.7.2 intel/13.0.1 openmpi/1.8.1 NETCDF/4.1.3 HDF5/1.8.10 UDUNITS/2.1.24 CDO/1.7.0" #=======================================================================================================