ecearth3/sources/tm5mp/rc/pycasso-machine-sara-cartesius-ei-nc.rc

!queue :
!
! machine/compiler specific settings
!
! The environment variables below are set by loading the proper modules into the environment!!!

#include  base/${my.branch}/rc/pycasso-queue-slurm-sara.rc


intel.opt.base : ${SURFSARA_IMPI_ROOT}
intel.usr.base : /Users/krol

! template settings for GNU Fortran compiler:
!#include base/${my.branch}/rc/pycasso-compiler-gfortran-4.1.rc

! compilers with MPI enabled:
! o same compilers, flags defined in options:
!mpi.compiler.fc                     :  ${compiler.fc}
!mpi.compiler.fc.openmp              :  ${compiler.fc.openmp}
! o use wrapper:
!mpi.compiler.fc                     :  openmpif90
!mpi.compiler.fc.openmp              :  openmpif90

! template settings for Intel fortran compiler:
#include base/${my.branch}/rc/pycasso-compiler-ifort-12.1.rc
! compilers with MPI enabled:
! o same compilers, flags defined in options:
!mpi.compiler.fc                     :  ${compiler.fc}
!mpi.compiler.fc.openmp              :  ${compiler.fc.openmp}
mpi.bin  :  ${intel.opt.base}/bin64/
mpi.compiler.fc                     :  ${mpi.bin}/mpiifort
mpi.compiler.fc.openmp              :  ${mpi.bin}/mpiifort

! template settings for Intel Fortran compiler:
!include base/branches/pycasso/rc/compiler.ifort-12.1.rc

! template settings for IBM xlf compiler:
!include base/branches/pycasso/rc/compiler.xlf-12.1.rc


!
! libraries
!

my.macports                     : 

! Z library (used for compression in HDF4)
compiler.lib.z.fflags           : 
compiler.lib.z.libs             : -lz

! JPEG library (used for compression in HDF4)
JPEG_HOME                       : ${intel.usr.base}/jpegsrc.v6b/
compiler.lib.jpeg.fflags        : 
compiler.lib.jpeg.libs          : -L${JPEG_HOME}/lib -ljpeg

! SZ library (used for compression in HDF4)
SZIP_HOME                       : ${intel.usr.base}/szip-2.1/
compiler.lib.sz.fflags          : -I${SURFSARA_SZIP_INCLUDE}
compiler.lib.sz.libs            : -L${SURFSARA_SZIP_LIB} -lsz -Wl,-rpath -Wl,${SURFSARA_SZIP_LIB}/lib

! HDF4 library:
HDF4_HOME                       : ${intel.usr.base}/hdf-4.2.5/
compiler.lib.hdf4.fflags        : -I${SURFSARA_HDF4_INCLUDE}
compiler.lib.hdf4.libs          : -L${SURFSARA_HDF4_LIB} -lmfhdf -ldf -ljpeg -lz

! HDF5 library:
HDF5_HOME                       : ${intel.usr.base}/hdf5-1.8.5-patch1
compiler.lib.hdf5.fflags        : -I${SURFSARA_HDF5_INCLUDE}
compiler.lib.hdf5.libs          : -L${SURFSARA_HDF5_LIB} -lhdf5_hl -lhdf5_fortran -lhdf5 -Wl,-rpath -Wl,${HDF5_HOME}/lib

! HDF5 library with parallel features:
HDF5_MPI_HOME                   : ${intel.usr.base}/mpich2-1.3.1/hdf5-1.8.5-patch1
compiler.lib.hdf5_par.fflags    : -I${SURFSARA_HDF5_INCLUDE}
compiler.lib.hdf5_par.libs      : -L${SURFSARA_HDF5_LIB} -lhdf5_hl -lhdf5_fortran -lhdf5 -Wl,-rpath -Wl,${SURFSARA_HDF5_LIB}
! NetCDF library:
! NOTE WP: This is the "classic" netcdf3 library compiled with gfortran

!NETCDF_HOME                     : ${my.macports}
NETCDF_HOME                     :  ${intel.usr.base}/netcdf-4.1.1
compiler.lib.netcdf.fflags      : -I${SURFSARA_NETCDF_INCLUDE}
compiler.lib.netcdf.libs        : -L${SURFSARA_NETCDF_LIB} -lnetcdf -lnetcdff

! NetCDF4 library:
NETCDF4_HOME                     : ${intel.usr.base}/netcdf4-4.1.1
compiler.lib.netcdf4.fflags     : -I${SURFSARA_NETCDF_INCLUDE}
compiler.lib.netcdf4.libs       : -L${SURFSARA_NETCDF_LIB} -lnetcdf -lnetcdff

! NetCDF4 library with parallel features:
NETCDF4_MPI_HOME                   : ${intel.usr.base}/mpich2-1.3.1/netcdf4-4.1.1
compiler.lib.netcdf4_par.fflags : -I${SURFSARA_NETCDF_INCLUDE}
compiler.lib.netcdf4_par.libs   : -L${SURFSARA_NETCDF_LIB} -lnetcdff -lnetcdf -lcurl -lhdf5_hl -lhdf5 -lz !-lnetcdf -lnetcdff


! MPI library:
!MPI_HOME                        : ${intel.usr.base}/mpich2-1.3.1/suite
compiler.lib.mpi.fflags         : -I${SURFSARA_IMPI_INCLUDE}
compiler.lib.mpi.libs           : -L${SURFSARA_IMPI_LIB} -lmpi

! GRIB library:
GRIBEX_HOME                     : /usr
compiler.lib.grib.fflags        : -I${GRIBEX_HOME}/include
compiler.lib.grib.libs          : -L${GRIBEX_HOME}/lib -lgribex

! Lapack library: (note that MKL is an environment variable set through the module environment)
!MKL                             : ${intel.opt.base}/Frameworks/mkl/
!compiler.lib.lapack.fflags      : -I${MKL_INC}
!compiler.lib.lapack.libs        : -L${MKL}/ -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -lguide -lpthread 
!compiler.lib.lapack.libs        : -L${MKL}/ -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -lpthread 
!
!
! UDUNITS version 1 library:
UDUNITS_VERSION                         :  udunits-1.12.11/
UDUNITS_HOME                            :  ${intel.usr.base}/${UDUNITS_VERSION}
compiler.lib.udunits.fflags             :  -I/home/ivdvelde/local/udunits/include
compiler.lib.udunits.libs               :  -L/home/ivdvelde/local/udunits/lib -ludunits
!
! queue
!

! template settings for LoadLeveler queue:
!include base/branches/pycasso/rc/queue.loadleveler.rc

! template settings for BSUB queue:
!include base/branches/pycasso/rc/queue.bsub.rc

! template settings for QSUB queue:
!include base/branches/pycasso/rc/queue.qsub.rc


!
! jobs
!

! shell to use in job scripts:
! o python scripts:
job.shell.python                   : /usr/bin/env python


!
! maker
!

! make command; 
! the setup script will insert the 'build.jobs' specified in the expert.rc
! or passed as argument to the setup script:
!
maker               :  make -j %{build.jobs}


!
! MPI runner
!

! command for running MPI parallel programs

!
! o MPI run (part of MPI distribution)
!
! command and arguments; no command file written, thus executable and arguments are added
! For gfortran
mpirun.command     :  srun
! For ifort
mpirun.args        : 
!
! name of command file; if empty, then executable and arguments are added to the command line
mpirun.cmdfile     :  
!
! name of host file:
mpirun.hostfile    :  

!!
!! o POE = Parallel Operating Environment (IBM machines on ECMWF, SARA)
!!
!! command and arguments; the call to executable is written to the command file:
!mpirun.command     :  poe
!mpirun.args        :  -labelio yes -procs ${par.ntask} -cmdfile ${mpirun.cmdfile} -hostfile ${mpirun.hostfile}
!!
!! name of command and host files (empty for not written):
!mpirun.cmdfile     :  ${my.basename}.cmdfile
!mpirun.hostfile    :  ${my.basename}.hostfile



!
! debugger
!

! debugger type: totalview | idb | kdbg
debugger                :  kdbg

! command for debugger:
! o KDE debugger around gdb (Linux systems using gfortran)
debugger.command        :  kdbg
! o Intel debugger (for systems with Intel compiler)
!debugger.command        :  idb -gui
! o TotalView (IBM)
!debugger.command        :  totalview -searchPath=${build.sourcedir}


!
! model data
!

! the user scratch directory:
my.scratch          :  /scratch/shared/${USER}
!my.scratch          :  ${TEMP}

! main archive:
!my.archdir          :  /ms_perm/TM
my.archdir          :  /Volumes/Storage/TM5

! base path to various data files:
my.data.dir          : ${my.archdir}/input

! local temporary meteo archive:
my.meteo.dir         : ${my.scratch}/meteo-buffer/

! permanent archives to search for meteo files:
#if "${my.meteo.format}" == "tm5-nc"
!my.meteo.search     :  /data/TM5/peters/NO-TAPE-YET/TM/meteo-nc/
my.meteo.search     : /archive/ivdvelde/carbontracker/meteo-ei-nc
#else
!my.meteo.search     :  ${my.archdir}/METEO/
my.meteo.search        :  /archive/ivdvelde/carbontracker/meteo-ei-nc
#endif

! extra install tasks:
my.install.tasks        : 
!my.install.tasks        : meteo.cartesius
!meteo.cartesius.install.dir : ${my.meteo.dir}
!meteo.cartesius.install.arch : ${my.meteo.search}
!meteo.cartesius.install.files : glb600x400/ec-ei-fc012up2tr3-tropo25-glb600x400-mfuv_20000101_00p03.nc
!meteo.cartesius.install.rsync : glb600x400/\*<yyyy><mm>\*