ecearth3/runtime/classic/platform/fmi-voima_pbs.cfg.tmpl

#!/usr/bin/env bash

set -ue

qhead_str="#PBS "

walltimestr="-l walltime="
walltime=[[[PLT:ACTIVE:WALLTIME]]]

nppnstr="-l mppnppn="
nppn=[[[PLT:ACTIVE:PROC_PER_NODE]]]

exp_name_str="-N "
exp_name=[[[MOD:GENERAL:EXP_NAME]]]

mppstr="-l mppwidth="
run_type=[[[PLT:ACTIVE:RUN_COMPONENTS]]]

case "$run_type" in
     "ifs")
     ifs_mpp=[[[MOD:IFS:NUMPROC]]]
     amip_mpp=$nppn
     mpp=$(($ifs_mpp+$amip_mpp))
     script=ece-esm.sh
     ;;

     "nemo")
     nemo_mpp=[[[MOD:NEM:NUMPROC]]]
     xios_mpp=[[[MOD:XIO:NUMPROC]]]
     if [ $xios_mpp -lt $nppn ]; then
	 xios_mpp=$nppn
     fi
     mpp=$(($nemo_mpp+$xios_mpp))
     script=ece-nemo.sh
     ;;
     
     "ifs+nemo")
     ifs_mpp=[[[MOD:IFS:NUMPROC]]]
     nemo_mpp=[[[MOD:NEM:NUMPROC]]]
     xios_mpp=[[[MOD:XIO:NUMPROC]]]
     if [ $xios_mpp -lt $nppn ]; then
	 xios_mpp=$nppn
     fi
     rnf_mpp=$nppn
     mpp=$(($ifs_mpp+$nemo_mpp+$xios_mpp+$rnf_mpp))
     script=ece-esm.sh
     ;;
     
     "ifs+tm5")
     ifs_mpp=[[[MOD:IFS:NUMPROC]]]
     amip_mpp=$nppn
     tm5_numproc_x=[[[MOD:TM5:NUMPROC_X]]]
     tm5_numproc_y=[[[MOD:TM5:NUMPROC_Y]]]
     tm5_mpp=$(($tm5_numproc_x*$tm5_numproc_y))
     # TM5 max. no. of processors is usually a strange number 
     # like 45 or 90, so check if it is an integer number of nodes
     tm5chk=$(($tm5_mpp%$nppn))     # MOD(tm5_mpp, nppn)
     if [ $tm5chk -ne 0 ]; then
	 tm5nodes=$((1+$tm5_mpp/$nppn))
	 tm5_mpp=$(($tm5nodes*$nppn))
     fi
     mpp=$(($ifs_mpp+$amip_mpp+$tm5_mpp))
     script=ece-esm.sh
     ;;
     
     "ifs+nemo+tm5")
     ifs_mpp=[[[MOD:IFS:NUMPROC]]]
     nemo_mpp=[[[MOD:NEM:NUMPROC]]]
     xios_mpp=[[[MOD:XIO:NUMPROC]]]
     if [ $xios_mpp -lt $nppn ]; then
	 xios_mpp=$nppn
     fi
     rnf_mpp=$nppn

     tm5_numproc_x=[[[MOD:TM5:NUMPROC_X]]]
     tm5_numproc_y=[[[MOD:TM5:NUMPROC_Y]]]
     tm5_mpp=$(($tm5_numproc_x*$tm5_numproc_y))
     # TM5 max. no. of processors is usually a strange number 
     # like 45 or 90, so check if it is an integer number of nodes
     tm5chk=$(($tm5_mpp%$nppn))     # MOD(tm5_mpp, nppn)
     if [ $tm5chk -ne 0 ]; then
	 tm5nodes=$((1+$tm5_mpp/$nppn))
	 tm5_mpp=$(($tm5nodes*$nppn))
     fi
     mpp=$(($ifs_mpp+$nemo_mpp+$xios_mpp+$rnf_mpp+$tm5_mpp))
     script=ece-esm.sh
     ;;
     
esac


cat > head.tmp << EOF
#!/usr/bin/env bash

${qhead_str}${walltimestr}${walltime}
${qhead_str}${nppnstr}${nppn}
${qhead_str}${mppstr}${mpp}
${qhead_str}${exp_name_str}${exp_name}
${qhead_str} -j oe

cd \$PBS_O_WORKDIR

# modules needed for parallel hdf5 for TM5
#source /opt/modules/default/etc/modules.sh
#module swap cray-mpich cray-mpich/7.0.4
#module swap hdf5 hdf5-parallel/1.8.11
#module swap netcdf netcdf-hdf5parallel/4.3.0
EOF

script_size=`wc -l $script | cut -d " " -f 1`
tail -$(($script_size-1)) $script > tail.tmp

cat head.tmp tail.tmp > ${exp_name}.sh
chmod +x ${exp_name}.sh
rm head.tmp tail.tmp

qsub -j oe -o ${exp_name}.1.log ${exp_name}.sh

exit 0