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file_def_nemo-pisces.xml

file_def_nemo-pisces.xml 18 KB
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  1.     <!-- $id$ -->
    2. 

  2.     
    3. 

  3.     <!-- 
    4. 

  4. 

  5. ============================================================================================================
    6. 

  6. =                                           output files definition                                        =
    7. 

  7. =                                            Define your own files ocean biogeochemistry                                         =
    8. 

  8. =                                         put the variables you want...                                    =
    9. 

  9. ============================================================================================================
    10. 

  10.     -->
    11. 

  11.     
    12. 

  12.     <file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="1d" min_digits="4">
    13. 

  13.    
    14. 

  14.       <file_group id="1ts_pis" output_freq="1ts"  output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
    15. 

  15.       <file_group id="1h_pis" output_freq="1h"  output_level="10" enabled=".TRUE."/> <!-- 1h files -->
    16. 

  16.       <file_group id="2h_pis" output_freq="2h"  output_level="10" enabled=".TRUE."/> <!-- 2h files -->
    17. 

  17.       <file_group id="3h_pis" output_freq="3h"  output_level="10" enabled=".TRUE."/> <!-- 3h files -->     
    18. 

  18.       <file_group id="4h_pis" output_freq="4h"  output_level="10" enabled=".TRUE."/> <!-- 4h files -->
    19. 

  19.       <file_group id="6h_pis" output_freq="6h"  output_level="10" enabled=".TRUE."/> <!-- 6h files -->     
    20. 

  20.       <file_group id="1d_pis" output_freq="1d"  output_level="10" enabled=".TRUE." >  <!-- 1d files -->   
    21. 

  21.  
    22. 

  22.         <file id="file20" name_suffix="_bioscalar" description="pisces sms variables" >
    23. 

  23.           <field field_ref="tdenit"   name="tdenit"   grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field>
    24. 

  24.           <field field_ref="tnfix"    name="tnfix"    grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field>
    25. 

  25.           <field field_ref="tcflx"    name="tcflx"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
    26. 

  26.           <field field_ref="tcflxcum" name="tcflxcum" grid_ref="grid_1point" unit="PgC"    operation="instant" > tcflxcum * -1. * 12. / 1e15 </field>
    27. 

  27.           <field field_ref="tcexp"    name="tcexp"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field>
    28. 

  28.           <field field_ref="tintpp"   name="tintpp"   grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field>
    29. 

  29.           <field field_ref="pno3tot"  name="pno3tot"  grid_ref="grid_1point" unit="umolN"  operation="instant" > pno3tot * 16. / 122. * 1e6 </field>
    30. 

  30.           <field field_ref="ppo4tot"  name="ppo4tot"  grid_ref="grid_1point" unit="umolP"  operation="instant" > ppo4tot * 1. / 122. * 1e6 </field>
    31. 

  31.           <field field_ref="psiltot"  name="psiltot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > psiltot * 1e6  </field>
    32. 

  32.           <field field_ref="palktot"  name="palktot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > palktot * 1e6  </field>
    33. 

  33.           <field field_ref="pfertot"  name="pfertot"  grid_ref="grid_1point" unit="nmolFe" operation="instant" > pfertot * 1e9  </field>
    34. 

  34.         </file>
    35. 

  35. 

  36.       </file_group> 
    37. 

  37. 

  38.       <file_group id="5d_pis" output_freq="5d"  output_level="10" enabled=".TRUE."/>  <!-- 5d files -->   
    39. 

  39. 	
    40. 

  40.       <file_group id="1m_pis" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
    41. 

  41. 

  42.        <file id="file21" name_suffix="_ptrc_T" description="pisces sms variables" >
    43. 

  43.           <field field_ref="DIC"       name="DIC"      operation="average" freq_op="1mo" > @DIC_E3T / @e3t </field>
    44. 

  44.           <field field_ref="Alkalini"  name="Alkalini" operation="average" freq_op="1mo" > @Alkalini_E3T / @e3t </field>
    45. 

  45.           <field field_ref="O2"        name="O2"       operation="average" freq_op="1mo" > @O2_E3T / @e3t </field>
    46. 

  46.           <field field_ref="CaCO3"     name="CaCO3"    operation="average" freq_op="1mo" > @CaCO3_E3T / @e3t </field>
    47. 

  47.           <field field_ref="PO4"       name="PO4"      operation="average" freq_op="1mo" > @PO4_E3T / @e3t </field>
    48. 

  48.           <field field_ref="POC"       name="POC"      operation="average" freq_op="1mo" > @POC_E3T / @e3t </field>
    49. 

  49.           <field field_ref="Si"        name="Si"       operation="average" freq_op="1mo" > @Si_E3T / @e3t </field>
    50. 

  50.           <field field_ref="PHY"       name="PHY"      operation="average" freq_op="1mo" > @PHY_E3T / @e3t </field>
    51. 

  51.           <field field_ref="ZOO"       name="ZOO"      operation="average" freq_op="1mo" > @ZOO_E3T / @e3t </field>
    52. 

  52.           <field field_ref="DOC"       name="DOC"      operation="average" freq_op="1mo" > @DOC_E3T / @e3t </field>
    53. 

  53.           <field field_ref="PHY2"      name="PHY2"     operation="average" freq_op="1mo" > @PHY2_E3T / @e3t </field>
    54. 

  54.           <field field_ref="ZOO2"      name="ZOO2"     operation="average" freq_op="1mo" > @ZOO2_E3T / @e3t </field>
    55. 

  55.           <field field_ref="DSi"       name="DSi"      operation="average" freq_op="1mo" > @DSi_E3T / @e3t </field>
    56. 

  56.           <field field_ref="Fer"       name="Fer"      operation="average" freq_op="1mo" > @Fer_E3T / @e3t </field>
    57. 

  57.           <field field_ref="BFe"       name="BFe"      operation="average" freq_op="1mo" > @BFe_E3T / @e3t </field>
    58. 

  58.           <field field_ref="GOC"       name="GOC"      operation="average" freq_op="1mo" > @GOC_E3T / @e3t </field>
    59. 

  59.           <field field_ref="SFe"       name="SFe"      operation="average" freq_op="1mo" > @SFe_E3T / @e3t </field>
    60. 

  60.           <field field_ref="DFe"       name="DFe"      operation="average" freq_op="1mo" > @DFe_E3T / @e3t </field>
    61. 

  61.           <field field_ref="GSi"       name="GSi"      operation="average" freq_op="1mo" > @GSi_E3T / @e3t </field>
    62. 

  62.           <field field_ref="NFe"       name="NFe"      operation="average" freq_op="1mo" > @NFe_E3T / @e3t </field>
    63. 

  63.           <field field_ref="NCHL"      name="NCHL"     operation="average" freq_op="1mo" > @NCHL_E3T / @e3t </field>
    64. 

  64.           <field field_ref="DCHL"      name="DCHL"     operation="average" freq_op="1mo" > @DCHL_E3T / @e3t </field>
    65. 

  65.           <field field_ref="NO3"       name="NO3"      operation="average" freq_op="1mo" > @NO3_E3T / @e3t </field>
    66. 

  66.           <field field_ref="NH4"       name="NH4"      operation="average" freq_op="1mo" > @NH4_E3T / @e3t </field>
    67. 

  67.     </file>
    68. 

  68. 

  69.    <file id="file22" name_suffix="_diad_T" description="additional pisces diagnostics" >
    70. 

  70.         <field field_ref="PH"         name="PH" />
    71. 

  71.         <field field_ref="CO3"        name="CO3" />
    72. 

  72.         <field field_ref="CO3sat"     name="CO3sat" />
    73. 

  73.         <field field_ref="PAR"        name="PAR"   />
    74. 

  74.         <field field_ref="PCAL"       name="PCAL"   />
    75. 

  75.         <field field_ref="Cflx"       name="Cflx"  />
    76. 

  76.         <field field_ref="Oflx"       name="Oflx"  />
    77. 

  77.         <field field_ref="Dpco2"      name="Dpco2"   />
    78. 

  78.         <field field_ref="Dpo2"       name="Dpo2"   />
    79. 

  79.         <field field_ref="Heup"      name="Heup"  />
    80. 

  80.         <field field_ref="Irondep"   name="Irondep"  />
    81. 

  81.         <field field_ref="Ironsed"   name="Ironsed"  />
    82. 

  82.         <field field_ref="Nfix"      name="Nfix"  />
    83. 

  83.         <field field_ref="LNnut"     name="LNnut"  />
    84. 

  84.         <field field_ref="LDnut"     name="LDnut"  />
    85. 

  85.         <field field_ref="LNFe"      name="LNFe"  />
    86. 

  86.         <field field_ref="LDFe"      name="LDFe"  />
    87. 

  87.         <field field_ref="LNlight"   name="LNlight"  />
    88. 

  88.         <field field_ref="LDlight"   name="LDlight"  />
    89. 

  89.         <field field_ref="TPP"       name="TPP"  />
    90. 

  90.         <field field_ref="INTPP"     name="INTPP"  />
    91. 

  91.         <field field_ref="INTPNEW"     name="INTPNEW"  />
    92. 

  92.         <field field_ref="TPNEW"      name="TPNEW"  />
    93. 

  93.         <field field_ref="EPC100"    name="EPC100"  />
    94. 

  94.         <field field_ref="EPFE100"   name="EPFE100"  />
    95. 

  95.         <field field_ref="EPSI100"   name="EPSI100"  />
    96. 

  96.         <field field_ref="EPCAL100"  name="EPCAL100"  />
    97. 

  97.     </file>
    98. 

  98. 

  99. 

  100.       <file id="file23" name_suffix="_bioscalar" description="pisces sms variables" >
    101. 

  101.           <field field_ref="tdenit"   name="tdenit"   grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field>
    102. 

  102.           <field field_ref="tnfix"    name="tnfix"    grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field>
    103. 

  103.           <field field_ref="tcflx"    name="tcflx"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
    104. 

  104.           <field field_ref="tcflxcum" name="tcflxcum" grid_ref="grid_1point" unit="PgC"    operation="instant" > tcflxcum * -1. * 12. / 1e15 </field>
    105. 

  105.           <field field_ref="tcexp"    name="tcexp"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field>
    106. 

  106.           <field field_ref="tintpp"   name="tintpp"   grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field>
    107. 

  107.           <field field_ref="pno3tot"  name="pno3tot"  grid_ref="grid_1point" unit="umolN"  operation="instant" > pno3tot * 16. / 122. * 1e6 </field>
    108. 

  108.           <field field_ref="ppo4tot"  name="ppo4tot"  grid_ref="grid_1point" unit="umolP"  operation="instant" > ppo4tot * 1. / 122. * 1e6 </field>
    109. 

  109.           <field field_ref="psiltot"  name="psiltot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > psiltot * 1e6  </field>
    110. 

  110.           <field field_ref="palktot"  name="palktot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > palktot * 1e6  </field>
    111. 

  111.           <field field_ref="pfertot"  name="pfertot"  grid_ref="grid_1point" unit="nmolFe" operation="instant" > pfertot * 1e9  </field>
    112. 

  112.         </file>
    113. 

  113. 

  114. 

  115.       </file_group>
    116. 

  116. 

  117.       <file_group id="2m_pis" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
    118. 

  118.       <file_group id="3m_pis" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
    119. 

  119.       <file_group id="4m_pis" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
    120. 

  120.       <file_group id="6m_pis" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
    121. 

  121. 

  122. 

  123.       <file_group id="1y_pis"  output_freq="1y" output_level="10" enabled=".FALSE."> <!-- real yearly files -->
    124. 

  124. 

  125.  
    126. 

  126.        <file id="file24" name_suffix="_ptrc_T" description="pisces sms variables" >
    127. 

  127.           <field field_ref="DIC"       name="DIC"      operation="average" freq_op="1y" > @DIC_E3T / @e3t </field>
    128. 

  128.           <field field_ref="Alkalini"  name="Alkalini" operation="average" freq_op="1y" > @Alkalini_E3T / @e3t </field>
    129. 

  129.           <field field_ref="O2"        name="O2"       operation="average" freq_op="1y" > @O2_E3T / @e3t </field>
    130. 

  130.           <field field_ref="CaCO3"     name="CaCO3"    operation="average" freq_op="1y" > @CaCO3_E3T / @e3t </field>
    131. 

  131.           <field field_ref="PO4"       name="PO4"      operation="average" freq_op="1y" > @PO4_E3T / @e3t </field>
    132. 

  132.           <field field_ref="POC"       name="POC"      operation="average" freq_op="1y" > @POC_E3T / @e3t </field>
    133. 

  133.           <field field_ref="Si"        name="Si"       operation="average" freq_op="1y" > @Si_E3T / @e3t </field>
    134. 

  134.           <field field_ref="PHY"       name="PHY"      operation="average" freq_op="1y" > @PHY_E3T / @e3t </field>
    135. 

  135.           <field field_ref="ZOO"       name="ZOO"      operation="average" freq_op="1y" > @ZOO_E3T / @e3t </field>
    136. 

  136.           <field field_ref="DOC"       name="DOC"      operation="average" freq_op="1y" > @DOC_E3T / @e3t </field>
    137. 

  137.           <field field_ref="PHY2"      name="PHY2"     operation="average" freq_op="1y" > @PHY2_E3T / @e3t </field>
    138. 

  138.           <field field_ref="ZOO2"      name="ZOO2"     operation="average" freq_op="1y" > @ZOO2_E3T / @e3t </field>
    139. 

  139.           <field field_ref="DSi"       name="DSi"      operation="average" freq_op="1y" > @DSi_E3T / @e3t </field>
    140. 

  140.           <field field_ref="Fer"       name="Fer"      operation="average" freq_op="1y" > @Fer_E3T / @e3t </field>
    141. 

  141.           <field field_ref="BFe"       name="BFe"      operation="average" freq_op="1y" > @BFe_E3T / @e3t </field>
    142. 

  142.           <field field_ref="GOC"       name="GOC"      operation="average" freq_op="1y" > @GOC_E3T / @e3t </field>
    143. 

  143.           <field field_ref="SFe"       name="SFe"      operation="average" freq_op="1y" > @SFe_E3T / @e3t </field>
    144. 

  144.           <field field_ref="DFe"       name="DFe"      operation="average" freq_op="1y" > @DFe_E3T / @e3t </field>
    145. 

  145.           <field field_ref="GSi"       name="GSi"      operation="average" freq_op="1y" > @GSi_E3T / @e3t </field>
    146. 

  146.           <field field_ref="NFe"       name="NFe"      operation="average" freq_op="1y" > @NFe_E3T / @e3t </field>
    147. 

  147.           <field field_ref="NCHL"      name="NCHL"     operation="average" freq_op="1y" > @NCHL_E3T / @e3t </field>
    148. 

  148.           <field field_ref="DCHL"      name="DCHL"     operation="average" freq_op="1y" > @DCHL_E3T / @e3t </field>
    149. 

  149.           <field field_ref="NO3"       name="NO3"      operation="average" freq_op="1y" > @NO3_E3T / @e3t </field>
    150. 

  150.           <field field_ref="NH4"       name="NH4"      operation="average" freq_op="1y" > @NH4_E3T / @e3t </field>
    151. 

  151.     </file>
    152. 

  152. 

  153.    <file id="file25" name_suffix="_diad_T" description="additional pisces diagnostics" >
    154. 

  154.         <field field_ref="PH"         name="PH" />
    155. 

  155.         <field field_ref="CO3"        name="CO3" />
    156. 

  156.         <field field_ref="CO3sat"     name="CO3sat" />
    157. 

  157.         <field field_ref="PAR"        name="PAR"   />
    158. 

  158.         <field field_ref="PCAL"       name="PCAL"   />
    159. 

  159.         <field field_ref="Cflx"       name="Cflx"  />
    160. 

  160.         <field field_ref="Oflx"       name="Oflx"  />
    161. 

  161.         <field field_ref="Dpco2"      name="Dpco2"   />
    162. 

  162.         <field field_ref="Dpo2"       name="Dpo2"   />
    163. 

  163.         <field field_ref="Heup"      name="Heup"  />
    164. 

  164.         <field field_ref="Irondep"   name="Irondep"  />
    165. 

  165.         <field field_ref="Ironsed"   name="Ironsed"  />
    166. 

  166.         <field field_ref="Nfix"      name="Nfix"  />
    167. 

  167.         <field field_ref="LNnut"     name="LNnut"  />
    168. 

  168.         <field field_ref="LDnut"     name="LDnut"  />
    169. 

  169.         <field field_ref="LNFe"      name="LNFe"  />
    170. 

  170.         <field field_ref="LDFe"      name="LDFe"  />
    171. 

  171.         <field field_ref="LNlight"   name="LNlight"  />
    172. 

  172.         <field field_ref="LDlight"   name="LDlight"  />
    173. 

  173.         <field field_ref="TPP"       name="TPP"  />
    174. 

  174.         <field field_ref="INTPP"     name="INTPP"  />
    175. 

  175.         <field field_ref="INTPNEW"     name="INTPNEW"  />
    176. 

  176.         <field field_ref="TPNEW"      name="TPNEW"  />
    177. 

  177.         <field field_ref="EPC100"    name="EPC100"  />
    178. 

  178.         <field field_ref="EPFE100"   name="EPFE100"  />
    179. 

  179.         <field field_ref="EPSI100"   name="EPSI100"  />
    180. 

  180.         <field field_ref="EPCAL100"  name="EPCAL100"  />
    181. 

  181.         <field field_ref="xfracal"   name="xfracal"  />
    182. 

  182.     </file>
    183. 

  183. 

  184.       <file id="file26" name_suffix="_bioscalar" description="pisces sms variables" >
    185. 

  185.           <field field_ref="tdenit"   name="tdenit"   grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field>
    186. 

  186.           <field field_ref="tnfix"    name="tnfix"    grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field>
    187. 

  187.           <field field_ref="tcflx"    name="tcflx"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
    188. 

  188.           <field field_ref="tcflxcum" name="tcflxcum" grid_ref="grid_1point" unit="PgC"    operation="instant" > tcflxcum * -1. * 12. / 1e15 </field>
    189. 

  189.           <field field_ref="tcexp"    name="tcexp"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field>
    190. 

  190.           <field field_ref="tintpp"   name="tintpp"   grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field>
    191. 

  191.           <field field_ref="pno3tot"  name="pno3tot"  grid_ref="grid_1point" unit="umolN"  operation="instant" > pno3tot * 16. / 122. * 1e6 </field>
    192. 

  192.           <field field_ref="ppo4tot"  name="ppo4tot"  grid_ref="grid_1point" unit="umolP"  operation="instant" > ppo4tot * 1. / 122. * 1e6 </field>
    193. 

  193.           <field field_ref="psiltot"  name="psiltot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > psiltot * 1e6  </field>
    194. 

  194.           <field field_ref="palktot"  name="palktot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > palktot * 1e6  </field>
    195. 

  195.           <field field_ref="pfertot"  name="pfertot"  grid_ref="grid_1point" unit="nmolFe" operation="instant" > pfertot * 1e9  </field>
    196. 

  196.     </file>
    197. 

  197. 

  198.        <file id="file27" name_suffix="_age" description="Age Inert tracer" >
    199. 

  199.           <field field_ref="Age"       name="Age"      operation="average" freq_op="1y" > @Age_E3T / @e3t </field>
    200. 

  200.       </file>
    201. 

  201. 

  202.        <file id="file28" name_suffix="_dbio_T" description="Additional diags" >
    203. 

  203.           <field field_ref="DICSFC_E3T"       name="DIC"      operation="average" freq_op="1y" > @DICSFC_E3T / @E3TSFC </field>
    204. 

  204.           <field field_ref="NO3SFC_E3T"       name="NO3"      operation="average" freq_op="1y" > @NO3SFC_E3T / @E3TSFC </field>
    205. 

  205.         <field field_ref="LNnutSFC"     name="LNnut"  />
    206. 

  206.         <field field_ref="LDnutSFC"     name="LDnut"  />
    207. 

  207.         <field field_ref="pCO2sea"     name="pCO2sea"  />
    208. 

  208.         <field field_ref="INTdtAlk"     name="INTdtAlk"  />
    209. 

  209.         <field field_ref="INTdtDIC"     name="INTdtDIC"  />
    210. 

  210.         <field field_ref="INTdtDIN"     name="INTdtDIN"  />
    211. 

  211.         <field field_ref="INTdtDIP"     name="INTdtDIP"  />
    212. 

  212.         <field field_ref="INTdtFer"     name="INTdtFer"  />
    213. 

  213.         <field field_ref="INTdtSil"     name="INTdtSil"  />
    214. 

  214.       </file>
    215. 

  215. 

  216.       </file_group>
    217. 

  217. 

  218.       <file_group id="2y_pis"  output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
    219. 

  219.       <file_group id="5y_pis"  output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
    220. 

  220.       <file_group id="10y_pis" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
    221. 

  221. 

  222.    </file_definition>
    223. 

  223.