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- MODULE trdtra
- !!======================================================================
- !! *** MODULE trdtra ***
- !! Ocean diagnostics: ocean tracers trends pre-processing
- !!=====================================================================
- !! History : 3.3 ! 2010-06 (C. Ethe) creation for the TRA/TRC merge
- !! 3.5 ! 2012-02 (G. Madec) update the comments
- !!----------------------------------------------------------------------
- !!----------------------------------------------------------------------
- !! trd_tra : pre-process the tracer trends
- !! trd_tra_adv : transform a div(U.T) trend into a U.grad(T) trend
- !! trd_tra_mng : tracer trend manager: dispatch to the diagnostic modules
- !! trd_tra_iom : output 3D tracer trends using IOM
- !!----------------------------------------------------------------------
- USE oce ! ocean dynamics and tracers variables
- USE dom_oce ! ocean domain
- USE sbc_oce ! surface boundary condition: ocean
- USE zdf_oce ! ocean vertical physics
- USE trd_oce ! trends: ocean variables
- USE trdtrc ! ocean passive mixed layer tracers trends
- USE trdglo ! trends: global domain averaged
- USE trdpen ! trends: Potential ENergy
- USE trdmxl ! ocean active mixed layer tracers trends
- USE ldftra_oce ! ocean active tracers lateral physics
- USE zdfddm ! vertical physics: double diffusion
- USE phycst ! physical constants
- USE in_out_manager ! I/O manager
- USE iom ! I/O manager library
- USE lib_mpp ! MPP library
- USE wrk_nemo ! Memory allocation
- IMPLICIT NONE
- PRIVATE
- PUBLIC trd_tra ! called by all tra_... modules
- REAL(wp) :: r2dt ! time-step, = 2 rdttra except at nit000 (=rdttra) if neuler=0
- REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: trdtx, trdty, trdt ! use to store the temperature trends
- REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: avt_evd ! store avt_evd to calculate EVD trend
- !! * Substitutions
- # include "domzgr_substitute.h90"
- # include "zdfddm_substitute.h90"
- # include "vectopt_loop_substitute.h90"
- !!----------------------------------------------------------------------
- !! NEMO/OPA 3.3 , NEMO Consortium (2010)
- !! $Id: trdtra.F90 8102 2017-05-31 09:08:52Z davestorkey $
- !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
- !!----------------------------------------------------------------------
- CONTAINS
- INTEGER FUNCTION trd_tra_alloc()
- !!---------------------------------------------------------------------
- !! *** FUNCTION trd_tra_alloc ***
- !!---------------------------------------------------------------------
- ALLOCATE( trdtx(jpi,jpj,jpk) , trdty(jpi,jpj,jpk) , trdt(jpi,jpj,jpk) , avt_evd(jpi,jpj,jpk), STAT= trd_tra_alloc )
- !
- IF( lk_mpp ) CALL mpp_sum ( trd_tra_alloc )
- IF( trd_tra_alloc /= 0 ) CALL ctl_warn('trd_tra_alloc: failed to allocate arrays')
- END FUNCTION trd_tra_alloc
- SUBROUTINE trd_tra( kt, ctype, ktra, ktrd, ptrd, pun, ptra )
- !!---------------------------------------------------------------------
- !! *** ROUTINE trd_tra ***
- !!
- !! ** Purpose : pre-process tracer trends
- !!
- !! ** Method : - mask the trend
- !! - advection (ptra present) converte the incoming flux (U.T)
- !! into trend (U.T => -U.grat(T)=div(U.T)-T.div(U)) through a
- !! call to trd_tra_adv
- !! - 'TRA' case : regroup T & S trends
- !! - send the trends to trd_tra_mng (trdtrc) for further processing
- !!----------------------------------------------------------------------
- INTEGER , INTENT(in) :: kt ! time step
- CHARACTER(len=3) , INTENT(in) :: ctype ! tracers trends type 'TRA'/'TRC'
- INTEGER , INTENT(in) :: ktra ! tracer index
- INTEGER , INTENT(in) :: ktrd ! tracer trend index
- REAL(wp), DIMENSION(jpi,jpj,jpk), INTENT(in) :: ptrd ! tracer trend or flux
- REAL(wp), DIMENSION(jpi,jpj,jpk), INTENT(in), OPTIONAL :: pun ! now velocity
- REAL(wp), DIMENSION(jpi,jpj,jpk), INTENT(in), OPTIONAL :: ptra ! now tracer variable
- !
- INTEGER :: jk ! loop indices
- REAL(wp), POINTER, DIMENSION(:,:,:) :: zwt, zws, ztrdt, ztrds ! 3D workspace
- !!----------------------------------------------------------------------
- !
- CALL wrk_alloc( jpi, jpj, jpk, ztrds )
- !
- IF( .NOT. ALLOCATED( trdtx ) ) THEN ! allocate trdtra arrays
- IF( trd_tra_alloc() /= 0 ) CALL ctl_stop( 'STOP', 'trd_tra : unable to allocate arrays' )
- ENDIF
- IF( ctype == 'TRA' .AND. ktra == jp_tem ) THEN !== Temperature trend ==!
- !
- SELECT CASE( ktrd )
- ! ! advection: transform the advective flux into a trend
- CASE( jptra_xad ) ; CALL trd_tra_adv( ptrd, pun, ptra, 'X', trdtx )
- CASE( jptra_yad ) ; CALL trd_tra_adv( ptrd, pun, ptra, 'Y', trdty )
- CASE( jptra_zad ) ; CALL trd_tra_adv( ptrd, pun, ptra, 'Z', trdt )
- CASE( jptra_bbc, & ! qsr, bbc: on temperature only, send to trd_tra_mng
- & jptra_qsr ) ; trdt(:,:,:) = ptrd(:,:,:) * tmask(:,:,:)
- ztrds(:,:,:) = 0._wp
- CALL trd_tra_mng( trdt, ztrds, ktrd, kt )
- CASE( jptra_evd ) ; avt_evd(:,:,:) = ptrd(:,:,:) * tmask(:,:,:)
- CASE DEFAULT ! other trends: masked trends
- trdt(:,:,:) = ptrd(:,:,:) * tmask(:,:,:) ! mask & store
- END SELECT
- !
- ENDIF
- IF( ctype == 'TRA' .AND. ktra == jp_sal ) THEN !== Salinity trends ==!
- !
- SELECT CASE( ktrd )
- ! ! advection: transform the advective flux into a trend
- ! ! and send T & S trends to trd_tra_mng
- CASE( jptra_xad ) ; CALL trd_tra_adv( ptrd , pun , ptra, 'X' , ztrds )
- CALL trd_tra_mng( trdtx, ztrds, ktrd, kt )
- CASE( jptra_yad ) ; CALL trd_tra_adv( ptrd , pun , ptra, 'Y' , ztrds )
- CALL trd_tra_mng( trdty, ztrds, ktrd, kt )
- CASE( jptra_zad ) ; CALL trd_tra_adv( ptrd , pun , ptra, 'Z' , ztrds )
- CALL trd_tra_mng( trdt , ztrds, ktrd, kt )
- CASE( jptra_zdfp ) ! diagnose the "PURE" Kz trend (here: just before the swap)
- ! ! iso-neutral diffusion case otherwise jptra_zdf is "PURE"
- CALL wrk_alloc( jpi, jpj, jpk, zwt, zws, ztrdt )
- !
- zwt(:,:, 1 ) = 0._wp ; zws(:,:, 1 ) = 0._wp ! vertical diffusive fluxes
- zwt(:,:,jpk) = 0._wp ; zws(:,:,jpk) = 0._wp
- DO jk = 2, jpk
- zwt(:,:,jk) = avt(:,:,jk) * ( tsa(:,:,jk-1,jp_tem) - tsa(:,:,jk,jp_tem) ) / fse3w(:,:,jk) * tmask(:,:,jk)
- zws(:,:,jk) = fsavs(:,:,jk) * ( tsa(:,:,jk-1,jp_sal) - tsa(:,:,jk,jp_sal) ) / fse3w(:,:,jk) * tmask(:,:,jk)
- END DO
- !
- ztrdt(:,:,jpk) = 0._wp ; ztrds(:,:,jpk) = 0._wp
- DO jk = 1, jpkm1
- ztrdt(:,:,jk) = ( zwt(:,:,jk) - zwt(:,:,jk+1) ) / fse3t(:,:,jk)
- ztrds(:,:,jk) = ( zws(:,:,jk) - zws(:,:,jk+1) ) / fse3t(:,:,jk)
- END DO
- CALL trd_tra_mng( ztrdt, ztrds, jptra_zdfp, kt )
- !
- ! ! Also calculate EVD trend at this point.
- zwt(:,:,:) = 0._wp ; zws(:,:,:) = 0._wp ! vertical diffusive fluxes
- DO jk = 2, jpk
- zwt(:,:,jk) = avt_evd(:,:,jk) * ( tsa(:,:,jk-1,jp_tem) - tsa(:,:,jk,jp_tem) ) / fse3w(:,:,jk) * tmask(:,:,jk)
- zws(:,:,jk) = avt_evd(:,:,jk) * ( tsa(:,:,jk-1,jp_sal) - tsa(:,:,jk,jp_sal) ) / fse3w(:,:,jk) * tmask(:,:,jk)
- END DO
- !
- ztrdt(:,:,jpk) = 0._wp ; ztrds(:,:,jpk) = 0._wp
- DO jk = 1, jpkm1
- ztrdt(:,:,jk) = ( zwt(:,:,jk) - zwt(:,:,jk+1) ) / fse3t(:,:,jk)
- ztrds(:,:,jk) = ( zws(:,:,jk) - zws(:,:,jk+1) ) / fse3t(:,:,jk)
- END DO
- CALL trd_tra_mng( ztrdt, ztrds, jptra_evd, kt )
- !
- CALL wrk_dealloc( jpi, jpj, jpk, zwt, zws, ztrdt )
- !
- CASE DEFAULT ! other trends: mask and send T & S trends to trd_tra_mng
- ztrds(:,:,:) = ptrd(:,:,:) * tmask(:,:,:)
- CALL trd_tra_mng( trdt, ztrds, ktrd, kt )
- END SELECT
- ENDIF
- IF( ctype == 'TRC' ) THEN !== passive tracer trend ==!
- !
- SELECT CASE( ktrd )
- ! ! advection: transform the advective flux into a masked trend
- CASE( jptra_xad ) ; CALL trd_tra_adv( ptrd , pun , ptra, 'X', ztrds )
- CASE( jptra_yad ) ; CALL trd_tra_adv( ptrd , pun , ptra, 'Y', ztrds )
- CASE( jptra_zad ) ; CALL trd_tra_adv( ptrd , pun , ptra, 'Z', ztrds )
- CASE DEFAULT ! other trends: just masked
- ztrds(:,:,:) = ptrd(:,:,:) * tmask(:,:,:)
- END SELECT
- ! ! send trend to trd_trc
- CALL trd_trc( ztrds, ktra, ktrd, kt )
- !
- ENDIF
- !
- CALL wrk_dealloc( jpi, jpj, jpk, ztrds )
- !
- END SUBROUTINE trd_tra
- SUBROUTINE trd_tra_adv( pf, pun, ptn, cdir, ptrd )
- !!---------------------------------------------------------------------
- !! *** ROUTINE trd_tra_adv ***
- !!
- !! ** Purpose : transformed a advective flux into a masked advective trends
- !!
- !! ** Method : use the following transformation: -div(U.T) = - U grad(T) + T.div(U)
- !! i-advective trends = -un. di-1[T] = -( di-1[fi] - tn di-1[un] )
- !! j-advective trends = -un. di-1[T] = -( dj-1[fi] - tn dj-1[un] )
- !! k-advective trends = -un. di+1[T] = -( dk+1[fi] - tn dk+1[un] )
- !! where fi is the incoming advective flux.
- !!----------------------------------------------------------------------
- REAL(wp), DIMENSION(jpi,jpj,jpk), INTENT(in ) :: pf ! advective flux in one direction
- REAL(wp), DIMENSION(jpi,jpj,jpk), INTENT(in ) :: pun ! now velocity in one direction
- REAL(wp), DIMENSION(jpi,jpj,jpk), INTENT(in ) :: ptn ! now or before tracer
- CHARACTER(len=1) , INTENT(in ) :: cdir ! X/Y/Z direction
- REAL(wp), DIMENSION(jpi,jpj,jpk), INTENT( out) :: ptrd ! advective trend in one direction
- !
- INTEGER :: ji, jj, jk ! dummy loop indices
- INTEGER :: ii, ij, ik ! index shift as function of the direction
- !!----------------------------------------------------------------------
- !
- SELECT CASE( cdir ) ! shift depending on the direction
- CASE( 'X' ) ; ii = 1 ; ij = 0 ; ik = 0 ! i-trend
- CASE( 'Y' ) ; ii = 0 ; ij = 1 ; ik = 0 ! j-trend
- CASE( 'Z' ) ; ii = 0 ; ij = 0 ; ik =-1 ! k-trend
- END SELECT
- !
- ! ! set to zero uncomputed values
- ptrd(jpi,:,:) = 0._wp ; ptrd(1,:,:) = 0._wp
- ptrd(:,jpj,:) = 0._wp ; ptrd(:,1,:) = 0._wp
- ptrd(:,:,jpk) = 0._wp
- !
- DO jk = 1, jpkm1 ! advective trend
- DO jj = 2, jpjm1
- DO ji = fs_2, fs_jpim1 ! vector opt.
- ptrd(ji,jj,jk) = - ( pf (ji,jj,jk) - pf (ji-ii,jj-ij,jk-ik) &
- & - ( pun(ji,jj,jk) - pun(ji-ii,jj-ij,jk-ik) ) * ptn(ji,jj,jk) ) &
- & / ( e1t(ji,jj) * e2t(ji,jj) * fse3t(ji,jj,jk) ) * tmask(ji,jj,jk)
- END DO
- END DO
- END DO
- !
- END SUBROUTINE trd_tra_adv
- SUBROUTINE trd_tra_mng( ptrdx, ptrdy, ktrd, kt )
- !!---------------------------------------------------------------------
- !! *** ROUTINE trd_tra_mng ***
- !!
- !! ** Purpose : Dispatch all tracer trends computation, e.g. 3D output,
- !! integral constraints, potential energy, and/or
- !! mixed layer budget.
- !!----------------------------------------------------------------------
- REAL(wp), DIMENSION(:,:,:), INTENT(inout) :: ptrdx ! Temperature or U trend
- REAL(wp), DIMENSION(:,:,:), INTENT(inout) :: ptrdy ! Salinity or V trend
- INTEGER , INTENT(in ) :: ktrd ! tracer trend index
- INTEGER , INTENT(in ) :: kt ! time step
- !!----------------------------------------------------------------------
- IF( neuler == 0 .AND. kt == nit000 ) THEN ; r2dt = rdt ! = rdtra (restart with Euler time stepping)
- ELSEIF( kt <= nit000 + 1) THEN ; r2dt = 2. * rdt ! = 2 rdttra (leapfrog)
- ENDIF
- ! ! 3D output of tracers trends using IOM interface
- IF( ln_tra_trd ) CALL trd_tra_iom ( ptrdx, ptrdy, ktrd, kt )
- ! ! Integral Constraints Properties for tracers trends !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
- IF( ln_glo_trd ) CALL trd_glo( ptrdx, ptrdy, ktrd, 'TRA', kt )
- ! ! Potential ENergy trends
- IF( ln_PE_trd ) CALL trd_pen( ptrdx, ptrdy, ktrd, kt, r2dt )
- ! ! Mixed layer trends for active tracers
- IF( ln_tra_mxl ) THEN
- !-----------------------------------------------------------------------------------------------
- ! W.A.R.N.I.N.G :
- ! jptra_ldf : called by traldf.F90
- ! at this stage we store:
- ! - the lateral geopotential diffusion (here, lateral = horizontal)
- ! - and the iso-neutral diffusion if activated
- ! jptra_zdf : called by trazdf.F90
- ! * in case of iso-neutral diffusion we store the vertical diffusion component in the
- ! lateral trend including the K_z contrib, which will be removed later (see trd_mxl)
- !-----------------------------------------------------------------------------------------------
- SELECT CASE ( ktrd )
- CASE ( jptra_xad ) ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_xad, '3D' ) ! zonal advection
- CASE ( jptra_yad ) ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_yad, '3D' ) ! merid. advection
- CASE ( jptra_zad ) ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_zad, '3D' ) ! vertical advection
- CASE ( jptra_ldf ) ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_ldf, '3D' ) ! lateral diffusion
- CASE ( jptra_bbl ) ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_bbl, '3D' ) ! bottom boundary layer
- CASE ( jptra_zdf )
- IF( ln_traldf_iso ) THEN ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_ldf, '3D' ) ! lateral diffusion (K_z)
- ELSE ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_zdf, '3D' ) ! vertical diffusion (K_z)
- ENDIF
- CASE ( jptra_dmp ) ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_dmp, '3D' ) ! internal 3D restoring (tradmp)
- CASE ( jptra_qsr ) ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_for, '3D' ) ! air-sea : penetrative sol radiat
- CASE ( jptra_nsr ) ; ptrdx(:,:,2:jpk) = 0._wp ; ptrdy(:,:,2:jpk) = 0._wp
- CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_for, '2D' ) ! air-sea : non penetr sol radiation
- CASE ( jptra_bbc ) ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_bbc, '3D' ) ! bottom bound cond (geoth flux)
- CASE ( jptra_npc ) ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_npc, '3D' ) ! non penetr convect adjustment
- CASE ( jptra_atf ) ; CALL trd_mxl_zint( ptrdx, ptrdy, jpmxl_atf, '3D' ) ! asselin time filter (last trend)
- !
- CALL trd_mxl( kt, r2dt ) ! trends: Mixed-layer (output)
- END SELECT
- !
- ENDIF
- !
- END SUBROUTINE trd_tra_mng
- SUBROUTINE trd_tra_iom( ptrdx, ptrdy, ktrd, kt )
- !!---------------------------------------------------------------------
- !! *** ROUTINE trd_tra_iom ***
- !!
- !! ** Purpose : output 3D tracer trends using IOM
- !!----------------------------------------------------------------------
- REAL(wp), DIMENSION(:,:,:), INTENT(inout) :: ptrdx ! Temperature or U trend
- REAL(wp), DIMENSION(:,:,:), INTENT(inout) :: ptrdy ! Salinity or V trend
- INTEGER , INTENT(in ) :: ktrd ! tracer trend index
- INTEGER , INTENT(in ) :: kt ! time step
- !!
- INTEGER :: ji, jj, jk ! dummy loop indices
- INTEGER :: ikbu, ikbv ! local integers
- REAL(wp), POINTER, DIMENSION(:,:) :: z2dx, z2dy ! 2D workspace
- !!----------------------------------------------------------------------
- !
- !!gm Rq: mask the trends already masked in trd_tra, but lbc_lnk should probably be added
- !
- ! Trends evaluated every time step that could go to the standard T file and can be output every ts into a 1ts file if 1ts output is selected
- SELECT CASE( ktrd )
- ! This total trend is done every time step
- CASE( jptra_tot ) ; CALL iom_put( "ttrd_tot" , ptrdx ) ! model total trend
- CALL iom_put( "strd_tot" , ptrdy )
- END SELECT
- ! These trends are done every second time step. When 1ts output is selected must go different (2ts) file from standard T-file
- IF( MOD( kt, 2 ) == 0 ) THEN
- SELECT CASE( ktrd )
- CASE( jptra_xad ) ; CALL iom_put( "ttrd_xad" , ptrdx ) ! x- horizontal advection
- CALL iom_put( "strd_xad" , ptrdy )
- !
- CASE( jptra_yad ) ; CALL iom_put( "ttrd_yad" , ptrdx ) ! y- horizontal advection
- CALL iom_put( "strd_yad" , ptrdy )
- !
- CASE( jptra_zad ) ; CALL iom_put( "ttrd_zad" , ptrdx ) ! z- vertical advection
- CALL iom_put( "strd_zad" , ptrdy )
- IF( .NOT. lk_vvl ) THEN ! cst volume : adv flux through z=0 surface
- CALL wrk_alloc( jpi, jpj, z2dx, z2dy )
- z2dx(:,:) = wn(:,:,1) * tsn(:,:,1,jp_tem) / fse3t(:,:,1)
- z2dy(:,:) = wn(:,:,1) * tsn(:,:,1,jp_sal) / fse3t(:,:,1)
- CALL iom_put( "ttrd_sad", z2dx )
- CALL iom_put( "strd_sad", z2dy )
- CALL wrk_dealloc( jpi, jpj, z2dx, z2dy )
- ENDIF
- CASE( jptra_totad ) ; CALL iom_put( "ttrd_totad" , ptrdx ) ! total advection
- CALL iom_put( "strd_totad" , ptrdy )
- !
- CASE( jptra_eivad ) ; CALL iom_put( "ttrd_eivad" , ptrdx ) ! eiv advection
- CALL iom_put( "strd_eivad" , ptrdy )
- !
- CASE( jptra_ldf ) ; CALL iom_put( "ttrd_ldf" , ptrdx ) ! lateral diffusion
- CALL iom_put( "strd_ldf" , ptrdy )
- !
- CASE( jptra_zdf ) ; CALL iom_put( "ttrd_zdf" , ptrdx ) ! vertical diffusion (including Kz contribution)
- CALL iom_put( "strd_zdf" , ptrdy )
- !
- CASE( jptra_zdfp ) ; CALL iom_put( "ttrd_zdfp", ptrdx ) ! PURE vertical diffusion (no isoneutral contribution)
- CALL iom_put( "strd_zdfp", ptrdy )
- !
- CASE( jptra_evd ) ; CALL iom_put( "ttrd_evd", ptrdx ) ! EVD trend (convection)
- CALL iom_put( "strd_evd", ptrdy )
- !
- CASE( jptra_dmp ) ; CALL iom_put( "ttrd_dmp" , ptrdx ) ! internal restoring (damping)
- CALL iom_put( "strd_dmp" , ptrdy )
- !
- CASE( jptra_bbl ) ; CALL iom_put( "ttrd_bbl" , ptrdx ) ! bottom boundary layer
- CALL iom_put( "strd_bbl" , ptrdy )
- !
- CASE( jptra_npc ) ; CALL iom_put( "ttrd_npc" , ptrdx ) ! static instability mixing
- CALL iom_put( "strd_npc" , ptrdy )
- !
- CASE( jptra_bbc ) ; CALL iom_put( "ttrd_bbc" , ptrdx ) ! geothermal heating (only on temperature)
- !
- CASE( jptra_nsr ) ; CALL iom_put( "ttrd_qns" , ptrdx(:,:,1) ) ! surface forcing + runoff (ln_rnf=T)
- CALL iom_put( "strd_cdt" , ptrdy(:,:,1) ) ! output as 2D surface fields
- !
- CASE( jptra_qsr ) ; CALL iom_put( "ttrd_qsr" , ptrdx ) ! penetrative solar radiat. (only on temperature)
- END SELECT
- ! the Asselin filter trend is also every other time step but needs to be lagged one time step
- ! Even when 1ts output is selected can go to the same (2ts) file as the trends plotted every even time step.
- ELSE IF( MOD( kt, 2 ) == 1 ) THEN
- SELECT CASE( ktrd )
- CASE( jptra_atf ) ; CALL iom_put( "ttrd_atf" , ptrdx ) ! asselin time Filter
- CALL iom_put( "strd_atf" , ptrdy )
- END SELECT
- END IF
- !
- END SUBROUTINE trd_tra_iom
- !!======================================================================
- END MODULE trdtra
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