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- !#######################################################################
- !
- ! MDF - Multiple Data Format
- !
- ! NAME
- ! MDF - generic interface to a number of scientific data formats
- !
- !
- ! BACKGROUND
- !
- ! Single interface to multipe file formats.
- ! From 'multiple' it should evolve into 'many' and preferably 'most'.
- !
- ! This module is intended to replace an older f90 interface to HDF4
- ! called 'file_hdf'.
- !
- ! Creation of file follows the steps similar to writing a NetCDF file:
- ! o opening of the file
- ! o (global attributes)
- ! o definition of dimensions (plus attributes)
- ! o definition of variables (plus attributes)
- ! o end of definition phase
- ! o write one or more time records
- ! o close file
- !
- !
- ! PROCEDURES
- !
- ! !
- ! ! module initialisation
- ! !
- !
- ! subroutine MDF_Init( status )
- ! integer, intent(out) :: status
- !
- ! !
- ! ! write data
- ! !
- !
- ! ! create a new file for output:
- ! subroutine MDF_Create( filename, ftype, cmode, hid, status )
- ! character(len=*), intent(in) :: filename
- ! integer, intent(in) :: ftype
- ! integer, intent(in) :: cmode
- ! integer, intent(out) :: hid
- ! integer, intent(out) :: status
- !
- ! ! ... or create more than one with different formats;
- ! ! specify a single base name and an equal number of extensions and type:
- ! subroutine MDF_Create( basename, exts, ftypes, cmode, hid, status )
- ! character(len=*), intent(in) :: basename
- ! character(len=*), intent(in) :: exts(:)
- ! integer, intent(in) :: ftypes(:)
- ! integer, intent(in) :: cmode
- ! integer, intent(out) :: hid
- ! integer, intent(out) :: status
- !
- ! subroutine MDF_Def_Dim( hid, name, length, dimid, status )
- ! integer, intent(in) :: hid
- ! character(len=*), intent(in) :: name
- ! integer, intent(in) :: length
- ! integer, intent(out) :: dimid
- ! integer, intent(out) :: status
- !
- ! subroutine MDF_Def_Var( hid, name, xtype, dimids, varid, status, &
- ! compression, deflate_level )
- ! integer, intent(in) :: hid
- ! character(len=*), intent(in) :: name
- ! integer, intent(in) :: xtype
- ! integer, intent(in) :: dimids(:)
- ! integer, intent(out) :: varid
- ! integer, intent(out) :: status
- ! integer, intent(in), optional :: compression
- ! integer, intent(in), optional :: deflate_level ! 0-9
- !
- ! subroutine MDF_Put_Att( hid, varid, name, values, status )
- ! integer, intent(in) :: hid
- ! integer, intent(in) :: varid
- ! character(len=*), intent(in) :: name
- ! <type>, intent(in) :: value(s)
- ! integer, intent(out) :: status
- !
- ! subroutine MDF_EndDef( hid, status )
- ! integer, intent(in) :: hid
- ! integer, intent(out) :: status
- !
- ! ! put variable:
- ! subroutine MDF_Put_Var( hid, varid, values, status, &
- ! start, count, stride, map )
- ! integer, intent(in) :: hid
- ! integer, intent(in) :: varid
- ! <type>, intent(in) :: values(<shape>)
- ! integer, intent(out) :: status
- ! integer, intent(in), optional :: start(:) ! (/1,1,..,1/)
- ! integer, intent(in), optional :: count(:)
- ! integer, intent(in), optional :: stride(:)
- ! integer, intent(in), optional :: map(:)
- !
- ! ! close file(s):
- ! subroutine MDF_Close( hid, status )
- ! integer, intent(out) :: hid
- ! integer, intent(out) :: status
- !
- ! !
- ! ! read file
- ! !
- !
- ! ! open single file:
- ! subroutine MDF_Open( filename, ftype, mode, hid, status )
- ! character(len=*), intent(in) :: filename
- ! integer, intent(in) :: ftype
- ! integer, intent(in) :: mode
- ! integer, intent(out) :: hid
- ! integer, intent(out) :: status
- !
- ! subroutine MDF_Inquire( hid, status, &
- ! nDimensions, nVariables, nAttributes )
- ! integer, intent(in) :: hid
- ! integer, intent(out) :: status
- ! integer, intent(out), optional :: nDimensions
- ! integer, intent(out), optional :: nVariables
- ! integer, intent(out), optional :: nAttributes
- !
- ! subroutine MDF_Inq_DimID( hid, name, dimid, status )
- ! integer, intent(in) :: hid
- ! character(len=*), intent(in) :: name
- ! integer, intent(out) :: dimid
- ! integer, intent(out) :: status
- !
- ! subroutine MDF_Inquire_Dimension( hid, dimid, status, name, length, unlimited )
- ! integer, intent(in) :: hid
- ! integer, intent(in) :: dimid
- ! integer, intent(out) :: status
- ! character(len=*), intent(out), optional :: name
- ! integer, intent(out), optional :: length
- ! logical, intent(out), optional :: unlimited
- !
- ! subroutine MDF_Inq_VarID( hid, name, varid, status )
- ! integer, intent(in) :: hid
- ! character(len=*), intent(in) :: name
- ! integer, intent(out) :: varid
- ! integer, intent(out) :: status
- !
- ! subroutine MDF_Inquire_Variable( hid, varid, status, &
- ! name, xtype, ndims, dimids, natts )
- ! integer, intent(in) :: hid
- ! integer, intent(in) :: varid
- ! integer, intent(out) :: status
- ! character(len=*), intent(out), optional :: name
- ! integer, intent(out), optional :: xtype
- ! integer, intent(out), optional :: ndims
- ! integer, intent(out), optional :: dimids(:)
- ! integer, intent(out), optional :: natts
- !
- ! subroutine MDF_Get_Var( hid, varid, values, status, &
- ! start, count, stride, map )
- ! integer, intent(in) :: hid
- ! integer, intent(in) :: varid
- ! <type>, intent(out) :: values(<shape>)
- ! integer, intent(out) :: status
- ! integer, intent(in), optional :: start (:)
- ! integer, intent(in), optional :: count (:)
- ! integer, intent(in), optional :: stride(:)
- ! integer, intent(in), optional :: map (:)
- !
- ! subroutine MDF_Inq_AttName( hid, varid, attnum, name, status )
- ! integer, intent(in) :: hid
- ! integer, intent(in) :: varid
- ! integer, intent(in) :: attnum
- ! character(len=*), intent(out) :: name
- ! integer, intent(out) :: status
- !
- ! subroutine MDF_Inquire_Attribute( hid, varid, name, status, xtype, length )
- ! integer, intent(in) :: hid
- ! integer, intent(in) :: varid
- ! character(len=*), intent(out) :: name
- ! integer, intent(out) :: status
- ! integer, intent(out), optional :: xtype
- ! integer, intent(out), optional :: length
- !
- ! subroutine MDF_Get_Att( hid, varid, name, values, status )
- ! integer, intent(in) :: hid
- ! integer, intent(in) :: varid
- ! character(len=*), intent(in) :: name
- ! <type>, intent(out) :: value(s)
- ! integer, intent(out) :: status
- !
- ! ! close file:
- ! subroutine MDF_Close( hid, status )
- ! integer, intent(out) :: hid
- ! integer, intent(out) :: status
- !
- ! !
- ! ! parallel access
- ! !
- !
- ! ! create a new file for output:
- ! subroutine MDF_Create( filename, ftype, cmode, hid, status, &
- ! mpi_comm=comm, mpi_info=MPI_INFO_NULL )
- ! character(len=*), intent(in) :: filename
- ! integer, intent(in) :: cmode
- ! integer, intent(out) :: hid
- ! integer, intent(out) :: status
- ! integer, intent(in), optional :: mpi_comm
- ! integer, intent(in), optional :: mpi_info
- !
- ! ! ... or create more than one with different formats;
- ! ! specify a single base name and an equal number of extensions and type:
- ! subroutine MDF_Create( basename, exts, ftypes, cmode, hid, status, &
- ! mpi_comm=comm, mpi_info=MPI_INFO_NULL )
- ! character(len=*), intent(in) :: basename
- ! character(len=*), intent(in) :: exts(:)
- ! integer, intent(in) :: ftypes(:)
- ! integer, intent(in) :: cmode
- ! integer, intent(out) :: hid
- ! integer, intent(out) :: status
- ! integer, intent(in), optional :: mpi_comm
- ! integer, intent(in), optional :: mpi_info
- !
- ! ! open single file:
- ! subroutine MDF_Open( filename, ftype, mode, hid, status, &
- ! mpi_comm=comm, mpi_info=MPI_INFO_NULL )
- ! character(len=*), intent(in) :: filename
- ! integer, intent(in) :: ftype
- ! integer, intent(in) :: mode
- ! integer, intent(out) :: hid
- ! integer, intent(out) :: status
- ! integer, intent(in), optional :: mpi_comm
- ! integer, intent(in), optional :: mpi_info
- !
- ! ! parallel access mode (see NetCDF4 manual):
- ! subroutine MDF_Var_Par_Access( hid, varid, par_access_mode, status )
- ! integer, intent(in) :: hid
- ! integer, intent(out) :: varid
- ! integer, intent(in) :: par_access_mode
- ! integer, intent(out) :: status
- !
- ! !
- ! ! show file content
- ! !
- !
- ! ! show file headers similar to 'ncdump -h' ;
- ! ! file type is guessed from extension if not specified directly:
- ! subroutine MDF_Show( filename, status [,filetype=MDF_NETCDF4|MDF_HDF|...] )
- ! character(len=*), intent(in) :: filename
- ! integer, intent(out) :: status
- ! integer, intent(in), optional :: filetype
- ! integer, intent(out) :: status
- !
- ! !
- ! ! end module access
- ! !
- !
- ! ! done with module:
- ! subroutine MDF_Done( status )
- ! integer, intent(out) :: status
- !
- !
- ! CREATION AND OPEN MODES
- !
- ! MDF_NEW : new file, error if already present
- ! MDF_REPLACE : new file, overwrite older file if necessary
- ! MDF_READ : open existing file for reading
- ! MDF_WRITE : open existing file for writing
- !
- !
- ! FILE TYPES
- !
- ! MDF_HDF4 : HDF4
- ! MDF_NETCDF : NetCDF (clasical format ; via NetCDF-3 or NetCDF-4 library)
- ! MDF_NETCDF4 : NetCDF4 (HDF5 format ; via NetCDF-4 library with NetCDF-4 features enabled;
- ! requires linking with HDF5 library too)
- !
- !
- ! GLOBAL ATTRIBUTES
- !
- ! To write global attributes, use the constant 'MDF_GLOBAL' as variable id.
- !
- !
- ! UNLIMITED DIMENSION
- !
- ! To define an unlimited dimension, use the constant 'MDF_UNLIMITED'
- ! as dimension length.
- !
- !
- ! DATA TYPES
- !
- ! MDF_CHAR
- ! MDF_BYTE
- ! MDF_SHORT
- ! MDF_INT
- ! MDF_FLOAT
- ! MDF_DOUBLE
- !
- !
- ! PARALLEL ACCESS MODES
- !
- ! MDF_INDEPENDENT ! independent data mode (one processor at a time can read/write)
- ! MDF_COLLECTIVE ! collective data mode (several processors can do I/O simultaneously )
- !
- !
- ! FPP MACRO'S
- !
- ! The following fpp macro's might be defined to compile only certain parts of the code:
- !
- ! with_hdf4 : compile with calls to HDF (=HDF4) library
- ! with_netcdf : compile with calls to NetCDF library
- ! with_netcdf4 : compile with calls to NetCDF-4 library with NetCDF-4 features enabled;
- ! automatically defines 'with_netcdf'
- ! with_netcdf4_par : compile with calls to NetCDF-4 library with NetCDF-4 and parallel
- ! features enabled; automatically defines 'with_netcdf4'
- !
- ! with_go : GO module is availble.
- ! If this macro is not set, the required parts of GO are simulated.
- !
- !
- ! PARALLEL I/O FOR DIFFERENT NETCDF4 VERSIONS
- !
- ! From NetCDF version 4.1 onwards it seems necessary to use a special creation mode
- ! named 'MPIIO' to open a file for parallel I/O :
- !
- ! status = NF90_Create( 'test.nc', NF90_NETCDF4+NF90_MPIIO, ncid,&
- ! comm=MPI_COMM_WORLD, info=MPI_INFO_NULL )
- !
- ! The following errors are related to this creation mode:
- ! o In version 4.0.1, there is no parameter 'NF90_MPIIO' yet.
- ! o In version 4.1.2, when 'NF90_MPIIO' is not used then the first call to a
- ! parallel i/o routine will raise:
- ! "Parallel operation on file opened for non-parallel acces"
- ! o In version 4.1.3, when 'NF90_Create' is called with 'comm' and 'info' arguments
- ! but not with creation mode 'NF90_MPIIO' :
- ! "Invalid argument" on create if opened with comm/info but not with creation mode NF90_MPIIO
- !
- ! To handle the 'NF90_MPIIO' behaviour correctly, the MDF module checks the NetCDF library
- ! version and uses hardcoded values to set the creation mode. If a version is not supported yet,
- ! an error message is raised and the user is suggested to add a new line to the code to support
- ! the new version.
- !
- !### macro's ###########################################################
- !
- #define TRACEBACK write (gol,'("in ",a," (",a,i6,")")') rname, __FILE__, __LINE__ ; call goErr
- !
- #define IF_NOT_OK_RETURN(action) if (status/=0) then; TRACEBACK; action; return; end if
- #define IF_ERROR_RETURN(action) if (status> 0) then; TRACEBACK; action; return; end if
- !
- #define IF_NF90_NOT_OK_RETURN(action) if (status/=NF90_NOERR) then; gol=NF90_StrError(status); call goErr; TRACEBACK; action; return; end if
- !
- ! macro's:
- #include "mdf.inc"
- !
- !#######################################################################
- ! netcdf4_par interface includes netcdf4 ...
- #ifdef with_netcdf4_par
- #define with_netcdf4
- #endif
- ! netcdf4 interface includes netcdf3 ...
- #ifdef with_netcdf4
- #define with_netcdf
- #endif
- module MDF
- #ifdef with_go
- use GO, only : gol, goPr, goErr
- #endif
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- #endif
- #ifdef with_netcdf
- use NETCDF, only : NF90_NOERR, NF90_StrError
- #endif
- implicit none
-
- ! --- in/out ---------------------------------------
- private
- public :: MDF_Init, MDF_Done
-
- public :: MDF_Create, MDF_Open, MDF_Close
- public :: MDF_EndDef
- public :: MDF_Inquire
- public :: MDF_Def_Dim
- public :: MDF_Inq_DimID
- public :: MDF_Inquire_Dimension
- public :: MDF_Def_Var
- public :: MDF_Var_Par_Access
- public :: MDF_Inq_VarID
- public :: MDF_Inquire_Variable
- public :: MDF_Put_Var
- public :: MDF_Get_Var
- public :: MDF_Put_Att
- public :: MDF_Get_Att
-
- public :: MDF_Show
- public :: MDF_NONE
- public :: MDF_NEW
- public :: MDF_REPLACE
- public :: MDF_READ
- public :: MDF_WRITE
-
- public :: MDF_HDF4
- public :: MDF_HDF5
- public :: MDF_NETCDF
- public :: MDF_NETCDF4
-
- public :: MDF_CHAR
- public :: MDF_BYTE
- public :: MDF_SHORT
- public :: MDF_INT
- public :: MDF_FLOAT
- public :: MDF_DOUBLE
- public :: MDF_DATATYPE_NAME
-
- public :: MDF_DEFLATE
-
- public :: MDF_INDEPENDENT, MDF_COLLECTIVE
- public :: MDF_GLOBAL
- public :: MDF_UNLIMITED
-
- ! --- const ----------------------------------------
- character(len=*), parameter :: mname = 'MDF'
-
- !
- ! creation modes
- !
-
- integer, parameter :: MDF_NEW = 1
- integer, parameter :: MDF_REPLACE = 2
- integer, parameter :: MDF_READ = 3
- integer, parameter :: MDF_WRITE = 4
- !
- integer, parameter :: MDF_CMODE_MAX = MDF_WRITE
- character(len=*), parameter :: MDF_CMODE_NAME(1:MDF_CMODE_MAX) = &
- (/ 'new ', 'replace', 'read ', 'write ' /)
- !
- ! file types
- !
-
- integer, parameter :: MDF_HDF4 = 1
- integer, parameter :: MDF_HDF5 = 2
- integer, parameter :: MDF_NETCDF = 3
- integer, parameter :: MDF_NETCDF4 = 4
- !
- integer, parameter :: MDF_FILETYPE_MAX = MDF_NETCDF4
- character(len=*), parameter :: MDF_FILETYPE_NAME(1:MDF_FILETYPE_MAX) = &
- (/ 'HDF4 ', 'HDF5 ', 'NetCDF ', 'NetCDF4' /)
- !
- ! data types
- !
-
- integer, parameter :: MDF_CHAR = 1 ! character
- integer, parameter :: MDF_BYTE = 2 ! integer(1)
- integer, parameter :: MDF_SHORT = 3 ! integer(2)
- integer, parameter :: MDF_INT = 4 ! integer(4)
- integer, parameter :: MDF_FLOAT = 5 ! real(4)
- integer, parameter :: MDF_DOUBLE = 6 ! real(8)
- !
- integer, parameter :: MDF_DATATYPE_MAX = MDF_DOUBLE
- character(len=*), parameter :: MDF_DATATYPE_NAME(1:MDF_DATATYPE_MAX) = &
- (/ 'char ','byte ','short ','int ','float ', 'double' /)
- !
- ! compression
- !
-
- integer, parameter :: MDF_DEFLATE = 1
- !
- integer, parameter :: MDF_COMPRESSION_MAX = MDF_DEFLATE
- character(len=*), parameter :: MDF_COMPRESSION_NAME(1:MDF_COMPRESSION_MAX) = &
- (/ 'deflate' /)
- !
- ! parallel access
- !
-
- integer, parameter :: MDF_INDEPENDENT = 1
- integer, parameter :: MDF_COLLECTIVE = 2
- !
- integer, parameter :: MDF_PARALLEL_ACCESS_MAX = MDF_INDEPENDENT
- character(len=*), parameter :: MDF_PARALLEL_ACCESS_NAME(1:MDF_PARALLEL_ACCESS_MAX) = &
- (/ 'independent' /)
- !
- ! special parameters
- !
-
- ! dummy ...
- integer, parameter :: MDF_NONE = -100
- ! special 'variable id' to add global attributes:
- integer, parameter :: MDF_GLOBAL = -101
-
- ! special dimension 'length' to denote unlimited dimension:
- integer, parameter :: MDF_UNLIMITED = -102
-
-
- #ifdef with_hdf4
- !
- ! hdf4 parameters
- !
- ! library constants constants
- include "hdf.f90"
- ! working precision of hdf library, used for handles:
- integer, parameter :: hdf4_wpi = 4
- #endif
- !
- ! internal
- !
-
- ! maximum rank of Fortran arrays:
- integer, parameter :: MAX_RANK = 7
-
- ! maximum length for variable names etc:
- integer, parameter :: LEN_NAME = 64
- integer, parameter :: LEN_FILE = 512
- integer, parameter :: LEN_LINE = 4000
- ! --- types ----------------------------------------
- ! interface to MDF dimension
-
- type MDF_Dim
- ! standard fields:
- character(len=LEN_NAME) :: name
- integer :: length
- logical :: unlimited
- logical :: named
- ! dimension id's
- #ifdef with_netcdf
- integer :: netcdf_dimid
- #endif
- end type MDF_Dim
- ! Define a structure with a pointer to the type;
- ! this is necessary to create a list of pointers:
- type P_MDF_Dim
- type(MDF_Dim), pointer :: p
- end type P_MDF_Dim
- ! define storage type for list with pointers:
- type MDF_Dim_List
- ! array of pointers; flexible size, increased if necessary
- type(P_MDF_Dim), pointer :: item(:)
- ! maximum number of filled items:
- integer :: maxitem
- ! actual number of filled items:
- integer :: nitem
- end type MDF_Dim_List
- ! interface to MDF variable
-
- type MDF_Var
- ! standard fields:
- character(len=LEN_NAME) :: name
- integer :: xtype
- integer :: xkind
- integer :: ndim
- integer :: dimids(MAX_RANK)
- integer :: shp(MAX_RANK)
- integer :: natt
- #ifdef with_hdf4
- integer :: hdf4_sdid
- integer :: hdf4_xtype
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_dataset_id
- character(len=LEN_NAME) :: hdf5_name
- integer(HSIZE_T) :: hdf5_dims (MAX_RANK)
- integer(HSIZE_T) :: hdf5_maxdims (MAX_RANK)
- integer(HSIZE_T) :: hdf5_chunkdims(MAX_RANK)
- logical :: hdf5_chunked
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- end type MDF_Var
- ! Define a structure with a pointer to the type;
- ! this is necessary to create a list of pointers:
- type P_MDF_Var
- type(MDF_Var), pointer :: p
- end type P_MDF_Var
- ! define storage type for list with pointers:
- type MDF_Var_List
- ! array of pointers; flexible size, increased if necessary
- type(P_MDF_Var), pointer :: item(:)
- ! maximum number of filled items:
- integer :: maxitem
- ! actual number of filled items:
- integer :: nitem
- end type MDF_Var_List
- ! interface to io file
-
- type MDF_File
- ! name of the file or basename of multiple files:
- character(len=LEN_FILE) :: filename
- ! creation mode:
- integer :: cmode
- ! parallel i/o ?
- logical :: parallel
- ! dimensions:
- type(MDF_Dim_List) :: Dim_List
- ! variables:
- type(MDF_Var_List) :: Var_List
- ! number of global attributes:
- integer :: natt
- ! file types:
- integer :: nftype
- integer :: ftypes(1:MDF_FILETYPE_MAX)
- ! access to file types:
- #ifdef with_hdf4
- character(len=LEN_FILE) :: hdf4_fname
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- character(len=LEN_FILE) :: hdf5_fname
- integer(HID_T) :: hdf5_file_id
- #endif
- #ifdef with_netcdf
- character(len=LEN_FILE) :: netcdf_fname
- integer :: netcdf_id
- #endif
- end type MDF_File
- ! Define a structure with a pointer to the type;
- ! this is necessary to create a list of pointers:
- type P_MDF_File
- type(MDF_File), pointer :: p
- end type P_MDF_File
- ! define storage type for list with pointers:
- type MDF_File_List
- ! array of pointers; flexible size, increased if necessary
- type(P_MDF_File), pointer :: item(:)
- ! maximum number of filled items:
- integer :: maxitem
- ! actual number of filled items:
- integer :: nitem
- end type MDF_File_List
- ! --- interfaces -----------------------------------
-
- interface MDF_Create
- module procedure MDF_Create_one
- module procedure MDF_Create_more
- end interface MDF_Create
-
- interface MDF_Put_Var
- module procedure MDF_Put_Var_c1_1d
- module procedure MDF_Put_Var_c1_2d
- module procedure MDF_Put_Var_c1_3d
- module procedure MDF_Put_Var_c1_4d
- module procedure MDF_Put_Var_c1_5d
- module procedure MDF_Put_Var_c1_6d
- module procedure MDF_Put_Var_c1_7d
- !
- module procedure MDF_Put_Var_i1_1d
- module procedure MDF_Put_Var_i1_2d
- module procedure MDF_Put_Var_i1_3d
- module procedure MDF_Put_Var_i1_4d
- module procedure MDF_Put_Var_i1_5d
- module procedure MDF_Put_Var_i1_6d
- module procedure MDF_Put_Var_i1_7d
- !
- module procedure MDF_Put_Var_i2_1d
- module procedure MDF_Put_Var_i2_2d
- module procedure MDF_Put_Var_i2_3d
- module procedure MDF_Put_Var_i2_4d
- module procedure MDF_Put_Var_i2_5d
- module procedure MDF_Put_Var_i2_6d
- module procedure MDF_Put_Var_i2_7d
- !
- module procedure MDF_Put_Var_i4_1d
- module procedure MDF_Put_Var_i4_2d
- module procedure MDF_Put_Var_i4_3d
- module procedure MDF_Put_Var_i4_4d
- module procedure MDF_Put_Var_i4_5d
- module procedure MDF_Put_Var_i4_6d
- module procedure MDF_Put_Var_i4_7d
- !
- module procedure MDF_Put_Var_r4_1d
- module procedure MDF_Put_Var_r4_2d
- module procedure MDF_Put_Var_r4_3d
- module procedure MDF_Put_Var_r4_4d
- module procedure MDF_Put_Var_r4_5d
- module procedure MDF_Put_Var_r4_6d
- module procedure MDF_Put_Var_r4_7d
- !
- module procedure MDF_Put_Var_r8_1d
- module procedure MDF_Put_Var_r8_2d
- module procedure MDF_Put_Var_r8_3d
- module procedure MDF_Put_Var_r8_4d
- module procedure MDF_Put_Var_r8_5d
- module procedure MDF_Put_Var_r8_6d
- module procedure MDF_Put_Var_r8_7d
- end interface
-
- interface MDF_Get_Var
- module procedure MDF_Get_Var_c1_1d
- module procedure MDF_Get_Var_c1_2d
- module procedure MDF_Get_Var_c1_3d
- module procedure MDF_Get_Var_c1_4d
- module procedure MDF_Get_Var_c1_5d
- module procedure MDF_Get_Var_c1_6d
- module procedure MDF_Get_Var_c1_7d
- !
- module procedure MDF_Get_Var_i1_1d
- module procedure MDF_Get_Var_i1_2d
- module procedure MDF_Get_Var_i1_3d
- module procedure MDF_Get_Var_i1_4d
- module procedure MDF_Get_Var_i1_5d
- module procedure MDF_Get_Var_i1_6d
- module procedure MDF_Get_Var_i1_7d
- !
- module procedure MDF_Get_Var_i2_1d
- module procedure MDF_Get_Var_i2_2d
- module procedure MDF_Get_Var_i2_3d
- module procedure MDF_Get_Var_i2_4d
- module procedure MDF_Get_Var_i2_5d
- module procedure MDF_Get_Var_i2_6d
- module procedure MDF_Get_Var_i2_7d
- !
- module procedure MDF_Get_Var_i4_1d
- module procedure MDF_Get_Var_i4_2d
- module procedure MDF_Get_Var_i4_3d
- module procedure MDF_Get_Var_i4_4d
- module procedure MDF_Get_Var_i4_5d
- module procedure MDF_Get_Var_i4_6d
- module procedure MDF_Get_Var_i4_7d
- !
- module procedure MDF_Get_Var_r4_1d
- module procedure MDF_Get_Var_r4_2d
- module procedure MDF_Get_Var_r4_3d
- module procedure MDF_Get_Var_r4_4d
- module procedure MDF_Get_Var_r4_5d
- module procedure MDF_Get_Var_r4_6d
- module procedure MDF_Get_Var_r4_7d
- !
- module procedure MDF_Get_Var_r8_1d
- module procedure MDF_Get_Var_r8_2d
- module procedure MDF_Get_Var_r8_3d
- module procedure MDF_Get_Var_r8_4d
- module procedure MDF_Get_Var_r8_5d
- module procedure MDF_Get_Var_r8_6d
- module procedure MDF_Get_Var_r8_7d
- end interface
- interface MDF_Put_Att
- module procedure MDF_Put_Att_c1_0d
- module procedure MDF_Put_Att_i1_0d
- module procedure MDF_Put_Att_i1_1d
- module procedure MDF_Put_Att_i2_0d
- module procedure MDF_Put_Att_i2_1d
- module procedure MDF_Put_Att_i4_0d
- module procedure MDF_Put_Att_i4_1d
- module procedure MDF_Put_Att_r4_0d
- module procedure MDF_Put_Att_r4_1d
- module procedure MDF_Put_Att_r8_0d
- module procedure MDF_Put_Att_r8_1d
- end interface
- interface MDF_Get_Att
- module procedure MDF_Get_Att_c1_0d
- module procedure MDF_Get_Att_i1_0d
- module procedure MDF_Get_Att_i1_1d
- module procedure MDF_Get_Att_i2_0d
- module procedure MDF_Get_Att_i2_1d
- module procedure MDF_Get_Att_i4_0d
- module procedure MDF_Get_Att_i4_1d
- module procedure MDF_Get_Att_r4_0d
- module procedure MDF_Get_Att_r4_1d
- module procedure MDF_Get_Att_r8_0d
- module procedure MDF_Get_Att_r8_1d
- end interface
-
- ! --- var ------------------------------------------
- #ifndef with_go
- ! message line:
- character(len=1024) :: gol
- #endif
- ! define lists:
- type(MDF_File_List) :: File_List
-
- contains
- #ifndef with_go
- ! ********************************************************************
- ! ***
- ! *** GO surrogate
- ! ***
- ! ********************************************************************
-
- ! substitutes for message routines from GO modules
-
- ! display message:
- subroutine goPr
- write (*,'(a)') trim(gol)
- end subroutine goPr
- ! display error message:
- subroutine goErr
- write (*,'("ERROR - ",a)') trim(gol)
- end subroutine goErr
-
- ! free file unit:
- subroutine goGetFU( fu, status )
- integer, intent(out) :: fu
- integer, intent(out) :: status
- logical :: opened
- fu = 456
- do
- inquire( unit=fu, opened=opened )
- if ( .not. opened ) exit
- fu = fu + 1
- end do
- status = 0
- end subroutine goGetFU
- #endif
- ! ********************************************************************
- ! ***
- ! *** MDF_Dim procedures
- ! ***
- ! ********************************************************************
-
- !
- ! Initialise a list.
- !
- subroutine MDF_Dim_List_Init( list, status )
- ! --- in/out -------------------------------------
- type(MDF_Dim_List), intent(out) :: list
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Dim_List_Init'
- ! --- begin --------------------------------------
- ! empty list:
- nullify( list%item )
- ! set counters:
- list%maxitem = 0
- list%nitem = 0
- ! ok
- status = 0
- end subroutine MDF_Dim_List_Init
- ! ***
- !
- ! Clear list, deallocate content.
- !
- subroutine MDF_Dim_List_Done( list, status )
- ! --- in/out -------------------------------------
- type(MDF_Dim_List), intent(inout) :: list
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Dim_List_Done'
- ! --- local --------------------------------------
- integer :: i
- ! --- begin --------------------------------------
- ! list defined ?
- if ( associated(list%item) ) then
- ! loop over all possible indices:
- do i = 1, list%maxitem
- ! filled ?
- if ( associated(list%item(i)%p) ) then
- ! remove structure, reset to save value:
- deallocate( list%item(i)%p )
- nullify( list%item(i)%p )
- end if
- end do
- ! clear, reset to save value:
- deallocate( list%item )
- nullify( list%item )
- end if
- ! set counters:
- list%maxitem = 0
- list%nitem = 0
- ! ok
- status = 0
- end subroutine MDF_Dim_List_Done
- ! ***
- !
- ! Add new item to list, return id number.
- !
- subroutine MDF_Dim_List_New_Item( list, hid, status )
- ! --- in/out -------------------------------------
- type(MDF_Dim_List), intent(inout) :: list
- integer, intent(out) :: hid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Dim_List_New_Item'
- ! --- local --------------------------------------
- integer :: i
- type(P_MDF_Dim), pointer :: item_new(:)
- ! --- begin --------------------------------------
- ! free item available ?
- if ( list%nitem < list%maxitem ) then
- ! search first empty item:
- hid = -1
- do i = 1, list%maxitem
- if ( .not. associated(list%item(i)%p) ) then
- hid = i
- exit
- end if
- end do
- ! not found ?
- if ( hid < 0 ) then
- write (gol,'("all items seem to be associated while counters suggest something else ...")'); call goErr
- write (gol,'(" maxitem : ",i6)') list%maxitem; call goErr
- write (gol,'(" nitem : ",i6)') list%nitem; call goErr
- TRACEBACK; status=1; return
- end if
- else
- ! allocate extra space:
- allocate( item_new(1:list%maxitem+100) )
- ! copy old pointers:
- do i = 1, list%maxitem
- item_new(i)%p => list%item(i)%p
- end do
- ! init new pointers:
- do i = list%maxitem+1, size(item_new)
- nullify(item_new(i)%p)
- end do
- ! first empty item:
- hid = list%maxitem+1
- ! clear old list if necessary:
- if ( associated(list%item) ) deallocate( list%item )
- ! point to new list:
- list%item => item_new
- ! reset size counter:
- list%maxitem = size(list%item)
- ! clear:
- nullify( item_new )
- end if
- ! allocate structure:
- allocate( list%item(hid)%p )
- ! increase counter:
- list%nitem = list%nitem + 1
- ! ok
- status = 0
- end subroutine MDF_Dim_List_New_Item
- ! ***
- !
- ! Remove item with given id from list.
- !
- subroutine MDF_Dim_List_Clear_Item( list, hid, status )
- ! --- in/out -------------------------------------
- type(MDF_Dim_List), intent(inout) :: list
- integer, intent(inout) :: hid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Dim_List_Clear_Item'
- ! --- local --------------------------------------
- ! --- begin --------------------------------------
- ! check index in list ...
- if ( (hid < 0) .or. (hid > list%maxitem) ) then
- write (gol,'("handle outside range:")'); call goErr
- write (gol,'(" handle : ",i6)') hid; call goErr
- write (gol,'(" range : ",2i6)') 1, list%maxitem; call goErr
- TRACEBACK; status=1; return
- end if
- ! check ...
- if ( .not. associated(list%item(hid)%p) ) then
- write (gol,'("handle not in use: ",i6)') hid; call goErr
- TRACEBACK; status=1; return
- end if
- ! clear structure:
- deallocate( list%item(hid)%p )
- ! reset pointer to save value:
- nullify( list%item(hid)%p )
- ! reset counter:
- list%nitem = list%nitem - 1
- ! ok
- status = 0
- end subroutine MDF_Dim_List_Clear_Item
- ! ***
- !
- ! Return pointer to user type given id.
- ! Status -1 if id is not in use.
- !
- subroutine MDF_Dim_List_Get_Pointer( list, hid, p, status, silent )
- ! --- in/out -------------------------------------
- type(MDF_Dim_List), intent(inout) :: list
- integer, intent(in) :: hid
- type(MDF_Dim), pointer :: p
- integer, intent(out) :: status
- logical, intent(in), optional :: silent
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Dim_List_Get_Pointer'
- ! --- local --------------------------------------
- logical :: shout
- ! --- begin --------------------------------------
- ! messages ?
- shout = .true.
- if ( present(silent) ) shout = .not. silent
- ! check index in list ...
- if ( (hid < 1) .or. (hid > list%maxitem) ) then
- write (gol,'("handle outside range:")'); call goErr
- write (gol,'(" handle : ",i6)') hid; call goErr
- write (gol,'(" range : ",2i6)') 1, list%maxitem; call goErr
- TRACEBACK; status=1; return
- end if
- ! check if handle is in use ...
- if ( .not. associated(list%item(hid)%p) ) then
- ! error or warning ?
- if ( shout ) then
- ! error status:
- write (gol,'("handle not in use: ",i6)') hid; call goErr
- TRACEBACK; status=1; return
- else
- ! warning status; this routine is used to test if a handle is in use:
- nullify( p )
- status = -1 ; return
- end if
- end if
- ! set shorthand:
- p => list%item(hid)%p
- ! ok
- status = 0
- end subroutine MDF_Dim_List_Get_Pointer
- ! ***
- !
- ! Return information:
- ! n
- ! Number of elements in use.
- ! maxid
- ! Current possible upper value for id's.
- ! Not all id's in {1,..,maxid} are in use.
- ! Usefull to implement a loop over all possible items.
- !
- subroutine MDF_Dim_List_Inquire( list, status, &
- n, maxid )
- ! --- in/out -------------------------------------
- type(MDF_Dim_List), intent(inout) :: list
- integer, intent(out) :: status
- integer, intent(out), optional :: n
- integer, intent(out), optional :: maxid
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Dim_List_Inquire'
- ! --- begin --------------------------------------
- ! set values ?
- if ( present(n ) ) n = list%nitem
- if ( present(maxid) ) maxid = list%maxitem
- ! ok
- status = 0
- end subroutine MDF_Dim_List_Inquire
- ! ********************************************************************
- ! ***
- ! *** MDF_Var procedures
- ! ***
- ! ********************************************************************
-
- !
- ! Initialise a list.
- !
- subroutine MDF_Var_List_Init( list, status )
- ! --- in/out -------------------------------------
- type(MDF_Var_List), intent(out) :: list
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Var_List_Init'
- ! --- begin --------------------------------------
- ! empty list:
- nullify( list%item )
- ! set counters:
- list%maxitem = 0
- list%nitem = 0
- ! ok
- status = 0
- end subroutine MDF_Var_List_Init
- ! ***
- !
- ! Clear list, deallocate content.
- !
- subroutine MDF_Var_List_Done( list, status )
- ! --- in/out -------------------------------------
- type(MDF_Var_List), intent(inout) :: list
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Var_List_Done'
- ! --- local --------------------------------------
- integer :: i
- ! --- begin --------------------------------------
- ! list defined ?
- if ( associated(list%item) ) then
- ! loop over all possible indices:
- do i = 1, list%maxitem
- ! filled ?
- if ( associated(list%item(i)%p) ) then
- ! remove structure, reset to save value:
- deallocate( list%item(i)%p )
- nullify( list%item(i)%p )
- end if
- end do
- ! clear, reset to save value:
- deallocate( list%item )
- nullify( list%item )
- end if
- ! set counters:
- list%maxitem = 0
- list%nitem = 0
- ! ok
- status = 0
- end subroutine MDF_Var_List_Done
- ! ***
- !
- ! Add new item to list, return id number.
- !
- subroutine MDF_Var_List_New_Item( list, hid, status )
- ! --- in/out -------------------------------------
- type(MDF_Var_List), intent(inout) :: list
- integer, intent(out) :: hid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Var_List_New_Item'
- ! --- local --------------------------------------
- integer :: i
- type(P_MDF_Var), pointer :: item_new(:)
- ! --- begin --------------------------------------
- ! free item available ?
- if ( list%nitem < list%maxitem ) then
- ! search first empty item:
- hid = -1
- do i = 1, list%maxitem
- if ( .not. associated(list%item(i)%p) ) then
- hid = i
- exit
- end if
- end do
- ! not found ?
- if ( hid < 0 ) then
- write (gol,'("all items seem to be associated while counters suggest something else ...")'); call goErr
- write (gol,'(" maxitem : ",i6)') list%maxitem; call goErr
- write (gol,'(" nitem : ",i6)') list%nitem; call goErr
- TRACEBACK; status=1; return
- end if
- else
- ! allocate extra space:
- allocate( item_new(1:list%maxitem+100) )
- ! copy old pointers:
- do i = 1, list%maxitem
- item_new(i)%p => list%item(i)%p
- end do
- ! init new pointers:
- do i = list%maxitem+1, size(item_new)
- nullify(item_new(i)%p)
- end do
- ! first empty item:
- hid = list%maxitem+1
- ! clear old list if necessary:
- if ( associated(list%item) ) deallocate( list%item )
- ! point to new list:
- list%item => item_new
- ! reset size counter:
- list%maxitem = size(list%item)
- ! clear:
- nullify( item_new )
- end if
- ! allocate structure:
- allocate( list%item(hid)%p )
- ! increase counter:
- list%nitem = list%nitem + 1
- ! ok
- status = 0
- end subroutine MDF_Var_List_New_Item
- ! ***
- !
- ! Remove item with given id from list.
- !
- subroutine MDF_Var_List_Clear_Item( list, hid, status )
- ! --- in/out -------------------------------------
- type(MDF_Var_List), intent(inout) :: list
- integer, intent(inout) :: hid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Var_List_Clear_Item'
- ! --- local --------------------------------------
- ! --- begin --------------------------------------
- ! check index in list ...
- if ( (hid < 0) .or. (hid > list%maxitem) ) then
- write (gol,'("handle outside range:")'); call goErr
- write (gol,'(" handle : ",i6)') hid; call goErr
- write (gol,'(" range : ",2i6)') 1, list%maxitem; call goErr
- TRACEBACK; status=1; return
- end if
- ! check ...
- if ( .not. associated(list%item(hid)%p) ) then
- write (gol,'("handle not in use: ",i6)') hid; call goErr
- TRACEBACK; status=1; return
- end if
- ! clear structure:
- deallocate( list%item(hid)%p )
- ! reset pointer to save value:
- nullify( list%item(hid)%p )
- ! reset counter:
- list%nitem = list%nitem - 1
- ! ok
- status = 0
- end subroutine MDF_Var_List_Clear_Item
- ! ***
- !
- ! Return pointer to user type given id.
- ! Status -1 if id is not in use.
- !
- subroutine MDF_Var_List_Get_Pointer( list, hid, p, status, silent )
- ! --- in/out -------------------------------------
- type(MDF_Var_List), intent(inout) :: list
- integer, intent(in) :: hid
- type(MDF_Var), pointer :: p
- integer, intent(out) :: status
- logical, intent(in), optional :: silent
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Var_List_Get_Pointer'
- ! --- local --------------------------------------
- logical :: shout
- ! --- begin --------------------------------------
- ! messages ?
- shout = .true.
- if ( present(silent) ) shout = .not. silent
- ! check index in list ...
- if ( (hid < 1) .or. (hid > list%maxitem) ) then
- write (gol,'("handle outside range:")'); call goErr
- write (gol,'(" handle : ",i6)') hid; call goErr
- write (gol,'(" range : ",2i6)') 1, list%maxitem; call goErr
- TRACEBACK; status=1; return
- end if
- ! check if handle is in use ...
- if ( .not. associated(list%item(hid)%p) ) then
- ! error or warning ?
- if ( shout ) then
- ! error status:
- write (gol,'("handle not in use: ",i6)') hid; call goErr
- TRACEBACK; status=1; return
- else
- ! warning status; this routine is used to test if a handle is in use:
- nullify( p )
- status = -1 ; return
- end if
- end if
- ! set shorthand:
- p => list%item(hid)%p
- ! ok
- status = 0
- end subroutine MDF_Var_List_Get_Pointer
- ! ***
- !
- ! Return information:
- ! n
- ! Number of elements in use.
- ! maxid
- ! Current possible upper value for id's.
- ! Not all id's in {1,..,maxid} are in use.
- ! Usefull to implement a loop over all possible items.
- !
- subroutine MDF_Var_List_Inquire( list, status, &
- n, maxid )
- ! --- in/out -------------------------------------
- type(MDF_Var_List), intent(inout) :: list
- integer, intent(out) :: status
- integer, intent(out), optional :: n
- integer, intent(out), optional :: maxid
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Var_List_Inquire'
- ! --- begin --------------------------------------
- ! set values ?
- if ( present(n ) ) n = list%nitem
- if ( present(maxid) ) maxid = list%maxitem
- ! ok
- status = 0
- end subroutine MDF_Var_List_Inquire
- ! ********************************************************************
- ! ***
- ! *** MDF procedures
- ! ***
- ! ********************************************************************
-
- !
- ! Initialise a list.
- !
- subroutine MDF_File_List_Init( list, status )
- ! --- in/out -------------------------------------
- type(MDF_File_List), intent(out) :: list
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_File_List_Init'
- ! --- begin --------------------------------------
- ! empty list:
- nullify( list%item )
- ! set counters:
- list%maxitem = 0
- list%nitem = 0
- ! ok
- status = 0
- end subroutine MDF_File_List_Init
- ! ***
- !
- ! Clear list, deallocate content.
- !
- subroutine MDF_File_List_Done( list, status )
- ! --- in/out -------------------------------------
- type(MDF_File_List), intent(inout) :: list
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_File_List_Done'
- ! --- local --------------------------------------
- integer :: i
- ! --- begin --------------------------------------
- ! list defined ?
- if ( associated(list%item) ) then
- ! loop over all possible indices:
- do i = 1, list%maxitem
- ! filled ?
- if ( associated(list%item(i)%p) ) then
- ! remove structure, reset to save value:
- deallocate( list%item(i)%p )
- nullify( list%item(i)%p )
- end if
- end do
- ! clear, reset to save value:
- deallocate( list%item )
- nullify( list%item )
- end if
- ! set counters:
- list%maxitem = 0
- list%nitem = 0
- ! ok
- status = 0
- end subroutine MDF_File_List_Done
- ! ***
- !
- ! Add new item to list, return id number.
- !
- subroutine MDF_File_List_New_Item( list, hid, status )
- ! --- in/out -------------------------------------
- type(MDF_File_List), intent(inout) :: list
- integer, intent(out) :: hid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_File_List_New_Item'
- ! --- local --------------------------------------
- integer :: i
- type(P_MDF_File), pointer :: item_new(:)
- ! --- begin --------------------------------------
- ! free item available ?
- if ( list%nitem < list%maxitem ) then
- ! search first empty item:
- hid = -1
- do i = 1, list%maxitem
- if ( .not. associated(list%item(i)%p) ) then
- hid = i
- exit
- end if
- end do
- ! not found ?
- if ( hid < 0 ) then
- write (gol,'("all items seem to be associated while counters suggest something else ...")'); call goErr
- write (gol,'(" maxitem : ",i6)') list%maxitem; call goErr
- write (gol,'(" nitem : ",i6)') list%nitem; call goErr
- TRACEBACK; status=1; return
- end if
- else
- ! allocate extra space:
- allocate( item_new(1:list%maxitem+100) )
- ! copy old pointers:
- do i = 1, list%maxitem
- item_new(i)%p => list%item(i)%p
- end do
- ! init new pointers:
- do i = list%maxitem+1, size(item_new)
- nullify(item_new(i)%p)
- end do
- ! first empty item:
- hid = list%maxitem+1
- ! clear old list if necessary:
- if ( associated(list%item) ) deallocate( list%item )
- ! point to new list:
- list%item => item_new
- ! reset size counter:
- list%maxitem = size(list%item)
- ! clear:
- nullify( item_new )
- end if
- ! allocate structure:
- allocate( list%item(hid)%p )
- ! increase counter:
- list%nitem = list%nitem + 1
- ! ok
- status = 0
- end subroutine MDF_File_List_New_Item
- ! ***
- !
- ! Remove item with given id from list.
- !
- subroutine MDF_File_List_Clear_Item( list, hid, status )
- ! --- in/out -------------------------------------
- type(MDF_File_List), intent(inout) :: list
- integer, intent(inout) :: hid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_File_List_Clear_Item'
- ! --- local --------------------------------------
- ! --- begin --------------------------------------
- ! check index in list ...
- if ( (hid < 0) .or. (hid > list%maxitem) ) then
- write (gol,'("handle outside range:")'); call goErr
- write (gol,'(" handle : ",i6)') hid; call goErr
- write (gol,'(" range : ",2i6)') 1, list%maxitem; call goErr
- TRACEBACK; status=1; return
- end if
- ! check ...
- if ( .not. associated(list%item(hid)%p) ) then
- write (gol,'("handle not in use: ",i6)') hid; call goErr
- TRACEBACK; status=1; return
- end if
- ! clear structure:
- deallocate( list%item(hid)%p )
- ! reset pointer to save value:
- nullify( list%item(hid)%p )
- ! reset counter:
- list%nitem = list%nitem - 1
- ! ok
- status = 0
- end subroutine MDF_File_List_Clear_Item
- ! ***
- !
- ! Return pointer to user type given id.
- ! Status -1 if id is not in use.
- !
- subroutine MDF_File_List_Get_Pointer( list, hid, p, status, silent )
- ! --- in/out -------------------------------------
- type(MDF_File_List), intent(inout) :: list
- integer, intent(in) :: hid
- type(MDF_File), pointer :: p
- integer, intent(out) :: status
- logical, intent(in), optional :: silent
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_File_List_Get_Pointer'
- ! --- local --------------------------------------
- logical :: shout
- ! --- begin --------------------------------------
- ! messages ?
- shout = .true.
- if ( present(silent) ) shout = .not. silent
- ! check index in list ...
- if ( (hid < 1) .or. (hid > list%maxitem) ) then
- write (gol,'("handle outside range:")'); call goErr
- write (gol,'(" handle : ",i6)') hid; call goErr
- write (gol,'(" range : ",2i6)') 1, list%maxitem; call goErr
- TRACEBACK; status=1; return
- end if
- ! check if handle is in use ...
- if ( .not. associated(list%item(hid)%p) ) then
- ! error or warning ?
- if ( shout ) then
- ! error status:
- write (gol,'("handle not in use: ",i6)') hid; call goErr
- TRACEBACK; status=1; return
- else
- ! warning status; this routine is used to test if a handle is in use:
- nullify( p )
- status = -1 ; return
- end if
- end if
- ! set shorthand:
- p => list%item(hid)%p
- ! ok
- status = 0
- end subroutine MDF_File_List_Get_Pointer
- ! ***
- !
- ! Return information:
- ! n
- ! Number of elements in use.
- ! maxid
- ! Current possible upper value for id's.
- ! Not all id's in {1,..,maxid} are in use.
- ! Usefull to implement a loop over all possible items.
- !
- subroutine MDF_File_List_Inquire( list, status, &
- n, maxid )
- ! --- in/out -------------------------------------
- type(MDF_File_List), intent(inout) :: list
- integer, intent(out) :: status
- integer, intent(out), optional :: n
- integer, intent(out), optional :: maxid
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_File_List_Inquire'
- ! --- begin --------------------------------------
- ! set values ?
- if ( present(n ) ) n = list%nitem
- if ( present(maxid) ) maxid = list%maxitem
- ! ok
- status = 0
- end subroutine MDF_File_List_Inquire
- ! ********************************************************************
- ! ***
- ! *** tools
- ! ***
- ! ********************************************************************
- subroutine MDF_Get_Kind( xtype, xkind, status )
- ! --- in/out -------------------------------------
- integer, intent(in) :: xtype
- integer, intent(out) :: xkind
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Kind'
- ! --- begin --------------------------------------
- ! set kind value given type:
- select case ( xtype )
- case ( MDF_CHAR ) ; xkind = 1
- case ( MDF_BYTE ) ; xkind = 1
- case ( MDF_SHORT ) ; xkind = 2
- case ( MDF_INT ) ; xkind = 4
- case ( MDF_FLOAT ) ; xkind = 4
- case ( MDF_DOUBLE ) ; xkind = 8
- case default
- write (gol,'("do not know kind for variable type : ",i6)') xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! ok
- status = 0
-
- end subroutine MDF_Get_Kind
-
-
- ! ***
- #ifdef with_hdf5_beta
- subroutine HDF5_Get_MDF_Type( hdf5_type_id, mdf_type, status )
- use HDF5, only : HID_T
- use HDF5, only : H5TGet_Class_f, H5TGet_Size_f, H5TClose_f
- use HDF5, only : H5T_STRING_F, H5T_INTEGER_F, H5T_FLOAT_F
-
- ! --- in/out -------------------------------------
- integer(HID_T), intent(in) :: hdf5_type_id
- integer, intent(out) :: mdf_type
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/HDF5_Get_MDF_Type'
-
- ! --- local --------------------------------------
- integer :: hdf5_typeclass, hdf5_typesize
- ! --- begin --------------------------------------
- ! get class:
- call H5TGet_Class_f( hdf5_type_id, hdf5_typeclass, status )
- IF_NOT_OK_RETURN(status=1)
- ! split:
- if ( hdf5_typeclass == H5T_STRING_F ) then
- mdf_type = MDF_CHAR
- else if ( hdf5_typeclass == H5T_INTEGER_F ) then
- call H5TGet_Size_f( hdf5_type_id, hdf5_typesize, status )
- IF_NOT_OK_RETURN(status=1)
- select case ( hdf5_typesize )
- case ( 1 ) ; mdf_type = MDF_BYTE
- case ( 2 ) ; mdf_type = MDF_SHORT
- case ( 4 ) ; mdf_type = MDF_INT
- case default
- write (gol,'("unsupported hdf5 type integer class size : ",i6)') hdf5_typesize; call goErr
- TRACEBACK; status=1; return
- end select
- else if ( hdf5_typeclass == H5T_FLOAT_F ) then
- call H5TGet_Size_f( hdf5_type_id, hdf5_typesize, status )
- IF_NOT_OK_RETURN(status=1)
- select case ( hdf5_typesize )
- case ( 4 ) ; mdf_type = MDF_FLOAT
- case ( 8 ) ; mdf_type = MDF_DOUBLE
- case default
- write (gol,'("unsupported hdf5 type float class size : ",i6)') hdf5_typesize; call goErr
- TRACEBACK; status=1; return
- end select
- else
- write (gol,'("unsupported hdf5 type class : ",i6)') hdf5_typeclass; call goErr
- TRACEBACK; status=1; return
- end if
- ! ok
- status = 0
-
- end subroutine HDF5_Get_MDF_Type
- #endif
- #ifdef with_netcdf
- subroutine NetCDF_Get_FileType( fname, ncformat, status )
-
- use NetCDF, only : NF90_Open, NF90_Close, NF90_Inquire
- use NetCDF, only : NF90_NOWRITE
- use NetCDF, only : NF90_FORMAT_CLASSIC, NF90_FORMAT_64BIT, NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC
-
- ! --- in/out ---------------------------------
-
- character(len=*), intent(in) :: fname
- character(len=*), intent(out) :: ncformat
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/NetCDF_Get_FileType'
-
- ! --- local ----------------------------------
-
- logical :: exist
- integer :: ncid
- integer :: formatNum
-
- ! --- begin ----------------------------------
- ! check ...
- inquire( file=trim(fname), exist=exist )
- if ( .not. exist ) then
- write (gol,'("file to be opened not found : ",a)') trim(fname); call goErr
- TRACEBACK; status=1; return
- end if
- ! open file for reading:
- status = NF90_Open( trim(fname), NF90_NOWRITE, ncid )
- IF_NF90_NOT_OK_RETURN(status=1)
-
- ! get format number:
- status = NF90_Inquire( ncid, formatNum=formatNum )
- IF_NF90_NOT_OK_RETURN(status=1)
-
- ! translate ...
- select case ( formatNum )
- case ( NF90_FORMAT_CLASSIC ) ; ncformat = 'netcdf_classic'
- case ( NF90_FORMAT_64BIT ) ; ncformat = 'netcdf_64bit'
- case ( NF90_FORMAT_NETCDF4 ) ; ncformat = 'netcdf4'
- case ( NF90_FORMAT_NETCDF4_CLASSIC ) ; ncformat = 'netcdf4_classic'
- case default ; ncformat = 'netcdf_unknown'
- end select
-
- ! close file:
- status = NF90_Close( ncid )
- IF_NF90_NOT_OK_RETURN(status=1)
- ! ok
- status = 0
-
- end subroutine NetCDF_Get_FileType
- #endif
- ! ********************************************************************
- ! ***
- ! *** module init/done
- ! ***
- ! ********************************************************************
-
- subroutine MDF_Init( status, loglevel )
- #ifdef with_hdf5_beta
- use HDF5, only : H5Open_f
- #endif
- ! --- in/out -------------------------------------
- integer, intent(out) :: status
- integer, intent(in), optional :: loglevel
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Init'
- ! --- local --------------------------------------
-
- integer :: loglev
- ! --- begin --------------------------------------
-
- ! log level ...
- loglev = 0 ! no messages
- if ( present(loglevel) ) loglev = loglevel
- ! info ...
- if (loglev>0) then; write (gol,'("initialize MDF module ...")'); call goPr; end if
- #ifdef with_hdf4
- ! info ...
- if (loglev>0) then; write (gol,'(" HDF4 interface enabled ...")'); call goPr; end if
- #else
- ! info ...
- if (loglev>0) then; write (gol,'(" HDF4 interface disabled ...")'); call goPr; end if
- #endif
- #ifdef with_hdf5_beta
- ! initialize Fortran interface:
- call H5Open_f( status )
- IF_NOT_OK_RETURN(status=1)
- ! info ...
- if (loglev>0) then; write (gol,'(" HDF5 interface enabled ...")'); call goPr; end if
- #endif
- #ifdef with_netcdf
- ! info ...
- if (loglev>0) then; write (gol,'(" NetCDF interface enabled ...")'); call goPr; end if
- #ifdef with_netcdf4
- if (loglev>0) then; write (gol,'(" NetCDF4 interface enabled ...")'); call goPr; end if
- #else
- if (loglev>0) then; write (gol,'(" NetCDF4 interface disabled ...")'); call goPr; end if
- #endif
- #else
- ! info ...
- if (loglev>0) then; write (gol,'(" NetCDF interface disabled ...")'); call goPr; end if
- #endif
- ! setup empty list:
- call MDF_File_List_Init( File_List, status )
- IF_NOT_OK_RETURN(status=1)
- ! ok
- status = 0
- end subroutine MDF_Init
- ! ***
-
- subroutine MDF_Done( status )
- #ifdef with_hdf5_beta
- use HDF5, only : H5Close_f
- #endif
- ! --- in/out -------------------------------------
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Done'
- ! --- local --------------------------------------
-
- integer :: maxid
- integer :: id
- type(MDF_File), pointer :: filep
- integer :: nerror
- ! --- begin --------------------------------------
-
- ! no errors yet ...
- nerror = 0
-
- ! get maximum id number:
- call MDF_File_List_Inquire( File_List, status, maxid=maxid )
- IF_NOT_OK_RETURN(status=1)
-
- ! loop over all possible id's:
- do id = 1, maxid
- ! get pointer to file structure; status -1 if not in use:
- call MDF_File_List_Get_Pointer( File_List, id, filep, status, silent=.true. )
- if ( status == -1 ) cycle
- IF_NOT_OK_RETURN(status=1)
- ! error ...
- write (gol,'("Called MDF_Done but file still in use: ",a)') trim(filep%filename); call goErr
- nerror = nerror + 1
- !! done with variables:
- !call MDF_Var_List_Done( filep%Var_List, status )
- !IF_NOT_OK_RETURN(status=1)
- !! done with dimensions:
- !call MDF_Dim_List_Done( filep%Dim_List, status )
- !IF_NOT_OK_RETURN(status=1)
- end do
- ! clear list:
- call MDF_File_List_Done( File_List, status )
- IF_NOT_OK_RETURN(status=1)
- #ifdef with_hdf5_beta
- ! done with Fortran interface:
- call H5Close_f( status )
- IF_NOT_OK_RETURN(status=1)
- #endif
- ! ok
- status = nerror
- end subroutine MDF_Done
- ! ********************************************************************
- ! ***
- ! *** file create/close
- ! ***
- ! ********************************************************************
- subroutine MDF_Create_one( filename, ftype, cmode, hid, status, mpi_comm, mpi_info )
- ! --- in/out -------------------------------------
- character(len=*), intent(in) :: filename
- integer, intent(in) :: ftype
- integer, intent(in) :: cmode
- integer, intent(out) :: hid
- integer, intent(out) :: status
-
- integer, intent(in), optional :: mpi_comm
- integer, intent(in), optional :: mpi_info
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Create_one'
-
- ! --- local --------------------------------------
- ! --- begin --------------------------------------
-
- ! special case of more than one ....
- call MDF_Create_more( filename, (/''/), (/ftype/), cmode, hid, status, &
- mpi_comm, mpi_info )
- IF_NOT_OK_RETURN(status=1)
-
- ! ok
- status = 0
- end subroutine MDF_Create_one
-
-
- ! ***
-
- subroutine MDF_Create_more( basename, exts, ftypes, cmode, hid, status, &
- mpi_comm, mpi_info )
- #ifdef with_hdf5_beta
- use HDF5, only : H5F_ACC_EXCL_F, H5F_ACC_TRUNC_F
- use HDF5, only : H5FCreate_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_CLOBBER, NF90_NOCLOBBER
- use NetCDF, only : NF90_Create
- #ifdef with_netcdf4
- use NetCDF, only : NF90_CLASSIC_MODEL, NF90_NETCDF4
- use NetCDF, only : NF90_Inq_LibVers
- ! This parameter does not exist for library versions prior to 4.1 ;
- ! Uncomment only ot get its value for your lib version, so you can hardcode it
- ! The correct creation mode for parallel i/o :
- !use NetCDF, only : NF90_MPIIO
- #endif
- #endif
- ! --- in/out -------------------------------------
- character(len=*), intent(in) :: basename
- character(len=*), intent(in) :: exts(:)
- integer, intent(in) :: ftypes(:)
- integer, intent(in) :: cmode
- integer, intent(out) :: hid
- integer, intent(out) :: status
-
- integer, intent(in), optional :: mpi_comm
- integer, intent(in), optional :: mpi_info
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Create_more'
-
- ! --- external ----------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfStart
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_amode
- #endif
- #ifdef with_hdf5_beta
- integer :: hdf5_amode
- #endif
- #ifdef with_netcdf
- integer :: netcdf_cmode
- character(len=80) :: netcdf_version
- #endif
- ! --- begin --------------------------------------
- ! new file:
- call MDF_File_List_New_Item( File_List, hid, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
- ! store filename stuff:
- filep%filename = trim(basename)
-
- ! store creation mode:
- filep%cmode = cmode
-
- ! parallel i/o ?
- filep%parallel = present(mpi_comm) .or. present(mpi_info)
- ! check ...
- if ( filep%parallel ) then
- if ( .not. all((/present(mpi_comm),present(mpi_info)/)) ) then
- write (gol,'("Only one of the arguments `mpi_comm` or `mpi_info` provided, that is not enough!")'); call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! check ...
- if ( size(exts) /= size(ftypes) ) then
- write (gol,'("number of specified extensions should equal number of specfied file types:")'); call goErr
- write (gol,'(" number of specified extensions : ",i6)') size(exts); call goErr
- write (gol,'(" number of specified file types : ",i6)') size(ftypes); call goErr
- TRACEBACK; status=1; return
- end if
- ! check ...
- if ( size(ftypes) > MDF_FILETYPE_MAX ) then
- write (gol,'("more file types specified than supported")'); call goErr
- write (gol,'(" maximum number : ",i6)') MDF_FILETYPE_MAX; call goErr
- write (gol,'(" specified : ",i6)') size(ftypes); call goErr
- TRACEBACK; status=1; return
- end if
- ! store file types:
- filep%nftype = size(ftypes)
- filep%ftypes(1:filep%nftype) = ftypes
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( filep%parallel ) then
- write (gol,'("HDF4 files could not be created in parallel")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! full file name:
- filep%hdf4_fname = trim(filep%filename)//trim(exts(iftype))
- ! write to an new file (remove if exist)
- hdf4_amode = DFACC_CREATE
- ! open file:
- filep%hdf4_id = sfStart( trim(filep%hdf4_fname), hdf4_amode )
- if ( filep%hdf4_id == FAIL ) then
- write (gol,'("from creating hdf4 file:")'); call goErr
- write (gol,'(" ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" does directory exist ?")'); call goErr
- TRACEBACK; status=1; return
- end if
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( filep%parallel ) then
- write (gol,'("MDF/HDF5 not implemented for parallel creation yet")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! full file name:
- filep%hdf5_fname = trim(filep%filename)//trim(exts(iftype))
- ! initial access mode:
- hdf5_amode = 0
- ! set access mode:
- select case ( cmode )
- case ( MDF_NEW )
- hdf5_amode = hdf5_amode + H5F_ACC_EXCL_F ! complain if already present
- case ( MDF_REPLACE )
- hdf5_amode = hdf5_amode + H5F_ACC_TRUNC_F ! overwrite if necessary
- case default
- write (gol,'("unsupported creation mode : ",i6)') cmode; call goErr
- TRACEBACK; status=1; return
- end select
- ! open file:
- call H5FCreate_f( trim(filep%hdf5_fname), hdf5_amode, filep%hdf5_file_id, status )
- if (status/=0) then
- write (gol,'("from creating hdf5 file:")'); call goErr
- write (gol,'(" ",a)') trim(filep%hdf5_fname); call goErr
- write (gol,'(" does directory exist ?")'); call goErr
- TRACEBACK; status=1; return
- end if
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! full file name:
- filep%netcdf_fname = trim(filep%filename)//trim(exts(iftype))
- ! initial creation mode:
- netcdf_cmode = 0
- ! set creation mode:
- select case ( cmode )
- case ( MDF_NEW )
- netcdf_cmode = netcdf_cmode + NF90_NOCLOBBER ! complain if already present
- case ( MDF_REPLACE )
- netcdf_cmode = netcdf_cmode + NF90_CLOBBER ! overwrite if necessary
- case default
- write (gol,'("unsupported creation mode : ",i6)') cmode; call goErr
- TRACEBACK; status=1; return
- end select
- ! latest format ?
- #ifdef with_netcdf4
- if ( ftype == MDF_NETCDF4 ) then
- !netcdf_cmode = netcdf_cmode + NF90_HDF5
- netcdf_cmode = netcdf_cmode + NF90_NETCDF4
- else
- netcdf_cmode = netcdf_cmode + NF90_CLASSIC_MODEL
- end if
- #else
- if ( ftype == MDF_NETCDF4 ) then
- write (gol,'("could not write NetCDF-4 file without `with_netcdf4` defined ...")'); call goErr
- TRACEBACK; status=1; return
- end if
- #endif
- ! create in parallel ?
- if ( filep%parallel ) then
- ! check ...
- if ( ftype /= MDF_NETCDF4 ) then
- write (gol,'("Creation of NetCDF file in parallel requires NETCDF4 file type.")'); call goErr
- TRACEBACK; status=1; return
- end if
- #ifdef with_netcdf4_par
- ! Creation mode MPIIO is needed for parallel i/o for NetCDF library 4.1 onwards.
- ! But since the parameter is not available for older versions, it can not used
- ! permantently to avoid errors about undevined variables.
- ! Instead, the value of MPIIO is hardcoded here for a number of library versions;
- ! please extend for your version if the error traceback has brought you here.
- ! First get library version:
- netcdf_version = trim(NF90_Inq_LibVers())
- ! switch:
- if ( (netcdf_version(1:5) == '4.0.1') ) then
- ! no NF90_MPIIO needed for this version ...
- else if ( (netcdf_version(1:5) == '4.1.1') .or. &
- (netcdf_version(1:5) == '4.1.2') .or. &
- (netcdf_version(1:5) == '4.1.3') .or. &
- (netcdf_version(1:3) == '4.2' ) .or. &
- (netcdf_version(1:3) == '4.3' ) .or. &
- (netcdf_version(1:3) == '4.4') ) then
- ! add value of NF90_MPIIO to creation mode:
- netcdf_cmode = netcdf_cmode + 8192
- !else if ( netcdf_version(1:7) == '4.x.x.x' ) then
- ! ! show value ; need to uncomment the 'use' statement in the top of this routine:
- ! write (gol,'("Value of NF90_MPIIO : ",i6)') NF90_MPIIO; call goErr
- ! ! add value of NF90_MPIIO to creation mode:
- ! netcdf_cmode = netcdf_cmode + NF90_MPIIO
- else
- write (gol,'("Please implement NF90_MPIIO behaviour for your NetCDF library version:")'); call goErr
- write (gol,'(" ",a)') trim(netcdf_version); call goErr
- TRACEBACK; status=1; return
- end if
- ! create file, provide communicator and info:
- status = NF90_Create( trim(filep%netcdf_fname), netcdf_cmode, filep%netcdf_id, &
- comm=mpi_comm, info=mpi_info )
- if (status/=NF90_NOERR) then
- gol = trim(NF90_StrError(status)); call goErr
- write (gol,'("from creating netcdf4 file :")'); call goErr
- write (gol,'(" ",a)') trim(filep%netcdf_fname); call goErr
- write (gol,'(" does directory exist ?")'); call goErr
- TRACEBACK; status=1; return
- end if
- #else
- write (gol,'("Parallel creation of NetCDF requires compilation with `with_netcdf4_par` macro defined.")'); call goErr
- TRACEBACK; status=1; return
- #endif
- else
- ! create file:
- status = NF90_Create( trim(filep%netcdf_fname), netcdf_cmode, filep%netcdf_id )
- if (status/=NF90_NOERR) then
- gol = trim(NF90_StrError(status)); call goErr
- write (gol,'("from creating netcdf4 file :")'); call goErr
- write (gol,'(" ",a)') trim(filep%netcdf_fname); call goErr
- write (gol,'(" ",a)') netcdf_cmode; call goErr
- write (gol,'(" does directory exist ?")'); call goErr
- TRACEBACK; status=1; return
- end if
- end if
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! init dimension list:
- call MDF_Dim_List_Init( filep%Dim_List, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! init variable list:
- call MDF_Var_List_Init( filep%Var_List, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! no global attributes yet:
- filep%natt = 0
-
- ! ok
- status = 0
- end subroutine MDF_Create_more
- ! ***
- subroutine MDF_Open( filename, ftype, mode, hid, status, &
- mpi_comm, mpi_info )
- #ifdef with_hdf5_beta
- use HDF5, only : SIZE_T, HSIZE_T
- use HDF5, only : H5FOpen_f
- use HDF5, only : H5F_ACC_RDONLY_F
- use HDF5, only : H5AGet_Num_Attrs_f
- use HDF5, only : H5GOpen_f, H5GClose_f, H5GN_Members_f, H5GGet_Obj_Info_Idx_f
- use HDF5, only : H5G_DATASET_F, H5G_LINK_F, H5G_GROUP_F, H5G_TYPE_F
- use HDF5, only : H5DOpen_f, H5DGet_Type_f, H5DGet_Space_f
- use HDF5, only : H5TClose_f
- use HDF5, only : H5SClose_f, H5SGet_Simple_Extent_Dims_f
- use HDF5, only : H5S_UNLIMITED_F
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_WRITE, NF90_NOWRITE
- use NetCDF, only : NF90_Open
- use NetCDF, only : NF90_Inquire
- use NetCDF, only : NF90_Inquire_Dimension
- use NetCDF, only : NF90_Inquire_Variable
- use NetCDF, only : NF90_CHAR, NF90_BYTE, NF90_SHORT, NF90_INT, NF90_FLOAT, NF90_DOUBLE
- #ifdef with_netcdf4_par
- use NetCDF, only : NF90_Open_Par,NF90_Inq_LibVers
- ! This parameter does not exist for library versions prior to 4.1 ;
- ! Uncomment only to get its value in your version so you can hardcode it.
- ! The correct creation mode for parallel i/o :
- !use NetCDF, only : NF90_MPIIO
- #endif
- #endif
- ! --- in/out -------------------------------------
- character(len=*), intent(in) :: filename
- integer, intent(in) :: ftype
- integer, intent(in) :: mode
- integer, intent(out) :: hid
- integer, intent(out) :: status
-
- integer, intent(in), optional :: mpi_comm
- integer, intent(in), optional :: mpi_info
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Open'
-
- ! --- external ----------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfStart
- integer(hdf4_wpi), external :: sfFInfo
- integer(hdf4_wpi), external :: sfGInfo
- integer(hdf4_wpi), external :: sfGDInfo
- integer(hdf4_wpi), external :: sfSelect
- integer(hdf4_wpi), external :: sfDimID
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Dim), pointer :: dimp
- type(MDF_Var), pointer :: varp
- logical :: exist
- #ifdef with_hdf4
- integer :: hdf4_amode
- integer :: hdf4_varind
- integer :: hdf4_xtype
- integer :: hdf4_dimind
- integer :: hdf4_dimid
- #endif
- #ifdef with_hdf5_beta
- integer :: hdf5_amode
- integer(HID_T) :: hdf5_grp_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer :: hdf5_obj_type
- integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_space_id
- character(len=6) :: snr
- #endif
- #ifdef with_netcdf
- integer :: netcdf_mode
- integer :: netcdf_xtype
- integer :: unlimid
- #endif
- integer :: ndim, idim, dimid
- integer :: nvar, ivar, varid
- integer :: natt
- character(len=LEN_NAME) :: name
- integer :: length
- integer :: dimids(MAX_RANK)
- integer :: shp(MAX_RANK)
- integer :: k, n
- character(len=80) :: netcdf_version
- ! --- begin --------------------------------------
- ! new file:
- call MDF_File_List_New_Item( File_List, hid, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
- ! init dimension list:
- call MDF_Dim_List_Init( filep%Dim_List, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! init variable list:
- call MDF_Var_List_Init( filep%Var_List, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! store filename stuff:
- filep%filename = trim(filename)
-
- ! store dummy creation mode:
- filep%cmode = -1
- ! parallel i/o ?
- filep%parallel = present(mpi_comm) .or. present(mpi_info)
- ! check ...
- if ( filep%parallel ) then
- if ( .not. all((/present(mpi_comm),present(mpi_info)/)) ) then
- write (gol,'("Only one of the arguments `mpi_comm` or `mpi_info` provided, that is not enough!")'); call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! store file type:
- filep%nftype = 1
- filep%ftypes(1) = ftype
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( filep%parallel ) then
- write (gol,'("HDF4 files could not be opened in parallel")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! full file name:
- filep%hdf4_fname = trim(filep%filename)
- ! check ...
- inquire( file=trim(filep%hdf4_fname), exist=exist )
- if ( .not. exist ) then
- write (gol,'("file to be opened not found : ",a)') trim(filep%hdf4_fname); call goErr
- TRACEBACK; status=1; return
- end if
- ! set access mode:
- select case ( mode )
- case ( MDF_READ )
- hdf4_amode = DFACC_READ
- case ( MDF_WRITE )
- hdf4_amode = DFACC_WRITE
- case default
- write (gol,'("unsupported open mode : ",i6)') mode; call goErr
- TRACEBACK; status=1; return
- end select
- ! open file:
- filep%hdf4_id = sfStart( trim(filep%hdf4_fname), hdf4_amode )
- if ( filep%hdf4_id == FAIL ) then
- write (gol,'("from starting access to hdf file:")'); call goErr
- write (gol,'(" file name : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" access mode : CREATE")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! get number of data sets and number of global attributes:
- status = sfFInfo( filep%hdf4_id, nvar, filep%natt )
- if ( status == FAIL ) then
- write (gol,'("from sfFInfo :")'); call goErr
- write (gol,'(" hdf file : ",a)') trim(filep%hdf4_fname); call goErr
- TRACEBACK; status=1; return
- end if
- ! loop over variables:
- do ivar = 1, nvar
- ! new variable:
- call MDF_Var_List_New_Item( filep%Var_List, varid, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! hdf variable index in 0,..,nvar-1
- hdf4_varind = ivar - 1
- ! get variable id:
- varp%hdf4_sdid = sfSelect( filep%hdf4_id, hdf4_varind )
- if ( varp%hdf4_sdid == FAIL ) then
- write (gol,'("unable to locate data set with index ",i6)') hdf4_varind; call goErr
- write (gol,'(" hdf file name : ",a)') trim(filep%hdf4_fname); call goErr
- TRACEBACK; status=1; return
- end if
- ! get info:
- status = sfGInfo( varp%hdf4_sdid, name, ndim, shp, varp%hdf4_xtype, varp%natt )
- if ( status /= SUCCEED ) then
- write (gol,'("getting info")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! store name:
- varp%name = trim(name)
- ! convert type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_CHAR ) ; varp%xtype = MDF_CHAR
- case ( DFNT_INT8 ) ; varp%xtype = MDF_BYTE
- case ( DFNT_INT16 ) ; varp%xtype = MDF_SHORT
- case ( DFNT_INT32 ) ; varp%xtype = MDF_INT
- case ( DFNT_FLOAT32 ) ; varp%xtype = MDF_FLOAT
- case ( DFNT_FLOAT64 ) ; varp%xtype = MDF_DOUBLE
- case default
- write (gol,'("unsupported data type : ",i6)') varp%hdf4_xtype; call goErr
- TRACEBACK; status=1; return
- end select
- ! set kind given type:
- call MDF_Get_Kind( varp%xtype, varp%xkind, status )
- IF_NOT_OK_RETURN(status=1)
- ! store number of dimensions:
- varp%ndim = ndim
- ! init arrays:
- varp%dimids = -1
- varp%shp = -1
- ! loop over dimensions:
- do idim = 1, ndim
- ! hdf4 dimension index in 0,..,ndim-1
- hdf4_dimind = idim - 1
- ! get hdf4 dimension id:
- hdf4_dimid = sfDimID( varp%hdf4_sdid, hdf4_dimind )
- if ( hdf4_dimid == FAIL ) then
- write (gol,'("error selecting dimension id :")'); call goErr
- write (gol,'(" index : ",i6)') hdf4_dimind; call goErr
- write (gol,'(" variable name : ",a)') trim(varp%name); call goErr
- write (gol,'(" hdf name : ",a)') trim(filep%hdf4_fname); call goErr
- TRACEBACK; status=1; return
- end if
- ! extract dimension info;
- ! data type is only usefull if a 'scale' is assigned to the dimension
- ! length might be SD_UNLIMITED, so use shp from sfGInfo for actual length
- status = sfGDInfo( hdf4_dimid, name, length, hdf4_xtype, natt )
- if ( hdf4_dimid == FAIL ) then
- write (gol,'("error getting dimension info :")'); call goErr
- write (gol,'(" index : ",i6)') hdf4_dimind; call goErr
- write (gol,'(" variable name : ",a)') trim(varp%name); call goErr
- write (gol,'(" hdf name : ",a)') trim(filep%hdf4_fname); call goErr
- TRACEBACK; status=1; return
- end if
- ! check if dimension is already defined ...;
- ! current number of defined dimensions:
- call MDF_Dim_List_Inquire( filep%Dim_List, status, n=n )
- IF_NOT_OK_RETURN(status=1)
- ! loop over current dimensions:
- dimid = -1
- do k = 1, n
- ! pointer to dimension structure:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, k, dimp, status )
- IF_NOT_OK_RETURN(status=1)
- ! compare:
- if ( trim(dimp%name) == trim(name) ) then
- ! check ...
- if ( dimp%length /= shp(idim) ) then
- write (gol,'("length of dimension is different from previous defined length:")'); call goErr
- write (gol,'(" file name : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" variable name : ",a)') trim(varp%name); call goErr
- write (gol,'(" dimension name : ",a)') trim(name); call goErr
- write (gol,'(" length : ",i6)') shp(idim); call goErr
- write (gol,'(" defined length : ",i6)') dimp%length; call goErr
- TRACEBACK; status=1; return
- end if
- ! ok; stop searching:
- dimid = k
- exit
- end if
- end do
- ! not found ? then new dimension should be defined:
- if ( dimid < 0 ) then
- ! new dimension:
- call MDF_Dim_List_New_Item( filep%Dim_List, dimid, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to dimension structure:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimid, dimp, status )
- IF_NOT_OK_RETURN(status=1)
- ! fill mdf dimension info:
- dimp%named = name(1:7) /= 'fakeDim'
- dimp%name = trim(name)
- dimp%unlimited = length == SD_UNLIMITED
- dimp%length = shp(idim) ! shp extraced via sfGInfo
- end if
- ! fill variable dimension info:
- varp%dimids(idim) = dimid
- varp%shp (idim) = dimp%length
- end do ! dimensions
- end do ! variables
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( filep%parallel ) then
- write (gol,'("MDF/HDF5 not implemented for parallel open yet")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! full file name:
- filep%hdf5_fname = trim(filep%filename)
- ! check ...
- inquire( file=trim(filep%hdf5_fname), exist=exist )
- if ( .not. exist ) then
- write (gol,'("file to be opened not found : ",a)') trim(filep%hdf5_fname); call goErr
- TRACEBACK; status=1; return
- end if
- ! set access mode:
- select case ( mode )
- case ( MDF_READ )
- hdf5_amode = H5F_ACC_RDONLY_F ! read-only
- case default
- write (gol,'("unsupported open mode : ",i6)') mode; call goErr
- TRACEBACK; status=1; return
- end select
- ! open file:
- call H5FOpen_f( trim(filep%hdf5_fname), hdf5_amode, filep%hdf5_file_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! get number of global attributes:
- call H5AGet_Num_Attrs_f( filep%hdf5_file_id, filep%natt, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open group:
- call H5GOpen_f( filep%hdf5_file_id, '/', hdf5_grp_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! get number of members:
- call H5GN_Members_f( hdf5_grp_id, '.', nvar, status )
- IF_NOT_OK_RETURN(status=1)
- ! loop over group members:
- do ivar = 1, nvar
- ! get group info:
- call H5GGet_Obj_Info_Idx_f( hdf5_grp_id, '.', ivar-1, hdf5_obj_name, hdf5_obj_type, status )
- IF_NOT_OK_RETURN(status=1)
- ! what ?
- if ( hdf5_obj_type == H5G_DATASET_F ) then
-
- ! new variable:
- call MDF_Var_List_New_Item( filep%Var_List, varid, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! store full hdf5 name:
- varp%hdf5_name = trim(hdf5_obj_name)
- ! store variable name:
- varp%name = trim(hdf5_obj_name)
- ! open data set:
- call H5DOpen_f( hdf5_grp_id, trim(hdf5_obj_name), varp%hdf5_dataset_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! get type id:
- call H5DGet_Type_f( varp%hdf5_dataset_id, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! convert to mdf type code:
- call HDF5_Get_MDF_Type( hdf5_type_id, varp%xtype, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! get data space id:
- call H5DGet_Space_f( varp%hdf5_dataset_id, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! get dimensions:
- call H5SGet_Simple_Extent_Dims_f( hdf5_space_id, varp%hdf5_dims, varp%hdf5_maxdims, status )
- if ( status < 0 ) then
- ! something went wrong ...
- write (gol,'("could not extract dimensions for attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- else
- ! number of dimensions:
- ndim = status
- end if
- ! store number of dimensions in variable structure:
- varp%ndim = status
- ! init arrays:
- varp%dimids = -1
- varp%shp = -1
- ! loop over dimensions:
- do idim = 1, ndim
- ! current length:
- length = varp%hdf5_dims(idim)
- ! new dimension:
- call MDF_Dim_List_New_Item( filep%Dim_List, dimid, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to dimension structure:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimid, dimp, status )
- IF_NOT_OK_RETURN(status=1)
- ! store current length:
- dimp%length = length
- ! unlimitted ?
- dimp%unlimited = varp%hdf5_maxdims(idim) == H5S_UNLIMITED_F
- ! dummy name ...
- dimp%named = .false.
- write (snr,'(i6)') length
- dimp%name = 'fakeDime'//adjustl(snr)
- ! fill variable dimension info:
- varp%dimids(idim) = dimid
- varp%shp (idim) = dimp%length
- end do ! dimensions
- ! release:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! get number of global attributes:
- call H5AGet_Num_Attrs_f( varp%hdf5_dataset_id, varp%natt, status )
- IF_NOT_OK_RETURN(status=1)
- else if ( hdf5_obj_type == H5G_LINK_F ) then
- write (gol,'("WARNING - HDF5 links not supported yet: ",a)') trim(hdf5_obj_name); call goPr
- else if ( hdf5_obj_type == H5G_GROUP_F ) then
- write (gol,'("WARNING - HDF5 groups not supported yet: ",a)') trim(hdf5_obj_name); call goPr
- else if ( hdf5_obj_type == H5G_TYPE_F ) then
- write (gol,'("WARNING - HDF5 types not supported yet: ",a)') trim(hdf5_obj_name); call goPr
- else
- write (gol,'("unsupported hdf5_obj_type ",i6)') hdf5_obj_type; call goErr
- TRACEBACK; status=1; return
- end if
- end do ! group members
-
- ! release group:
- call H5GClose_f( hdf5_grp_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! full file name:
- filep%netcdf_fname = trim(filep%filename)
- ! check ...
- inquire( file=trim(filep%netcdf_fname), exist=exist )
- if ( .not. exist ) then
- write (gol,'("file to be opened not found : ",a)') trim(filep%netcdf_fname); call goErr
- TRACEBACK; status=1; return
- end if
- ! set open mode:
- select case ( mode )
- case ( MDF_READ )
- netcdf_mode = NF90_NOWRITE
- case ( MDF_WRITE )
- netcdf_mode = NF90_WRITE
- case default
- write (gol,'("unsupported creation mode : ",i6)') mode; call goErr
- TRACEBACK; status=1; return
- end select
- ! open in parallel ?
- if ( filep%parallel ) then
- ! open file in parallel:
- #ifdef with_netcdf4_par
- ! Creation mode MPIIO is needed for parallel i/o for NetCDF library 4.1 onwards.
- ! But since the parameter is not available for older versions, it can not used
- ! permantently to avoid errors about undefined variables.
- ! Instead, the value of MPIIO is hardcoded here for a number of library versions;
- ! please extend for your version if the error traceback has brought you here.
- ! First get library version:
- netcdf_version = trim(NF90_Inq_LibVers())
- ! switch:
- if ( (netcdf_version(1:5) == '4.0.1') ) then
- ! no NF90_MPIIO needed for this version ...
- else if ( (netcdf_version(1:5) == '4.1.1') .or. &
- (netcdf_version(1:5) == '4.1.2') .or. &
- (netcdf_version(1:5) == '4.1.3') .or. &
- (netcdf_version(1:3) == '4.2') .or. &
- (netcdf_version(1:3) == '4.3') .or. &
- (netcdf_version(1:3) == '4.4') ) then
- ! add value of NF90_MPIIO to creation mode:
- netcdf_mode = netcdf_mode + 8192
- !else if ( netcdf_version(1:y) == '4.x.x.x' ) then
- ! ! show value ; need to uncomment the 'use' statement in the top of this routine:
- ! write (gol,'("Value of NF90_MPIIO : ",i6)') NF90_MPIIO; call goErr
- ! ! add value of NF90_MPIIO to creation mode:
- ! netcdf_mode = netcdf_mode + 0
- else
- write (gol,'("Please implement NF90_MPIIO behaviour for your NetCDF library version:")'); call goErr
- write (gol,'(" ",a)') trim(netcdf_version); call goErr
- TRACEBACK; status=1; return
- end if
- status = NF90_Open_Par( trim(filep%netcdf_fname), netcdf_mode, &
- mpi_comm, mpi_info, filep%netcdf_id )
- IF_NF90_NOT_OK_RETURN(status=1)
- #else
- write (gol,'("Parallel open of NetCDF requires compilation with `with_netcdf4_par` macro defined.")'); call goErr
- TRACEBACK; status=1; return
- #endif
- else
- ! open file:
- status = NF90_Open( trim(filep%netcdf_fname), netcdf_mode, filep%netcdf_id )
- IF_NF90_NOT_OK_RETURN(status=1)
- end if
- ! get number of global attributes:
- status = NF90_Inquire( filep%netcdf_id, nAttributes=filep%natt )
- IF_NF90_NOT_OK_RETURN(status=1)
- ! get number of dimensions and (dummy) id of unlimitted dimension:
- status = NF90_Inquire( filep%netcdf_id, nDimensions=ndim, unlimitedDimID=unlimid )
- IF_NF90_NOT_OK_RETURN(status=1)
- ! loop over dimensions:
- do idim = 1, ndim
- ! new dimension:
- call MDF_Dim_List_New_Item( filep%Dim_List, dimid, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to dimension structure:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimid, dimp, status )
- IF_NOT_OK_RETURN(status=1)
- ! netcdf dimension id is number from 1..ndim
- dimp%netcdf_dimid = idim
- ! get info:
- status = NF90_Inquire_Dimension( filep%netcdf_id, dimp%netcdf_dimid, &
- name=name, len=length )
- IF_NF90_NOT_OK_RETURN(status=1)
- ! store:
- dimp%named = .true.
- dimp%name = trim(name)
- dimp%length = length
- dimp%unlimited = dimp%netcdf_dimid == unlimid
- end do
- ! get number of variables:
- status = NF90_Inquire( filep%netcdf_id, nVariables=nvar )
- IF_NF90_NOT_OK_RETURN(status=1)
- ! loop over variables:
- do ivar = 1, nvar
- ! new variable:
- call MDF_Var_List_New_Item( filep%Var_List, varid, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! netcdf variable id is number from 1..nvar
- varp%netcdf_varid = ivar
- ! get info:
- status = NF90_Inquire_Variable( filep%netcdf_id, varp%netcdf_varid, &
- name=name, xtype=netcdf_xtype, ndims=ndim )
- IF_NF90_NOT_OK_RETURN(status=1)
- ! store name:
- varp%name = trim(name)
- ! convert type:
- select case ( netcdf_xtype )
- case ( NF90_CHAR ) ; varp%xtype = MDF_CHAR
- case ( NF90_BYTE ) ; varp%xtype = MDF_BYTE
- case ( NF90_SHORT ) ; varp%xtype = MDF_SHORT
- case ( NF90_INT ) ; varp%xtype = MDF_INT
- case ( NF90_FLOAT ) ; varp%xtype = MDF_FLOAT
- case ( NF90_DOUBLE ) ; varp%xtype = MDF_DOUBLE
- case default
- write (gol,'("unsupported data type : ",i6)') netcdf_xtype; call goErr
- TRACEBACK; status=1; return
- end select
- ! set kind given type:
- call MDF_Get_Kind( varp%xtype, varp%xkind, status )
- IF_NOT_OK_RETURN(status=1)
- ! store number of dimensions:
- varp%ndim = ndim
- ! get netcdf dimension id's now that number is known:
- status = NF90_Inquire_Variable( filep%netcdf_id, varp%netcdf_varid, dimids=dimids(1:ndim) )
- IF_NF90_NOT_OK_RETURN(status=1)
- ! init arrays:
- varp%dimids = -1
- varp%shp = -1
- ! loop over dimensions:
- do idim = 1, ndim
- ! mdf dimension id is the same as the netcdf dimension id,
- ! both are numbers 1,..,maxdim :
- dimid = dimids(idim)
- ! pointer to dimension structure:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimid, dimp, status )
- IF_NOT_OK_RETURN(status=1)
- ! store:
- varp%dimids(idim) = dimid
- varp%shp (idim) = dimp%length
- end do
- ! get number of variable attributes:
- status = NF90_Inquire_Variable( filep%netcdf_id, varp%netcdf_varid, nAtts=varp%natt )
- IF_NF90_NOT_OK_RETURN(status=1)
- end do ! variables
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- if ((ftype>=1).and.(ftype<=MDF_FILETYPE_MAX)) then
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- end if
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
-
- ! ok
- status = 0
- end subroutine MDF_Open
- ! ***
- subroutine MDF_Close( hid, status )
- #ifdef with_hdf5_beta
- use HDF5, only : H5FClose_f
- use HDF5, only : H5DClose_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Close
- #endif
- ! --- in/out -------------------------------------
- integer, intent(inout) :: hid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Close'
-
- ! --- external ----------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfEnd
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- integer :: iftype
- integer :: ftype
- integer :: ivar, nvar
- type(MDF_Var), pointer :: varp
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! close file:
- status = sfEnd( filep%hdf4_id )
- if ( status == FAIL ) then
- write (gol,'("while closing HDF4 file:")'); call goErr
- write (gol,'(" file name : ",a)') trim(filep%hdf4_fname); call goErr
- TRACEBACK; status=1; return
- end if
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! get number of elements in variable list:
- call MDF_Var_List_Inquire( filep%Var_List, status, n=nvar )
- IF_NOT_OK_RETURN(status=1)
- ! list variables ?
- if ( nvar > 0 ) then
- ! loop over variables:
- do ivar = 1, nvar
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, ivar, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! close data set:
- call H5DClose_f( varp%hdf5_dataset_id, status )
- IF_NOT_OK_RETURN(status=1)
- end do ! variables
- end if ! nvar > 0
- ! close file:
- call H5FClose_f( filep%hdf5_file_id, status )
- if ( status /= 0 ) then
- write (gol,'("while closing HDF5 file:")'); call goErr
- write (gol,'(" file name : ",a)') trim(filep%hdf5_fname); call goErr
- TRACEBACK; status=1; return
- end if
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! close file:
- status = NF90_Close( filep%netcdf_id )
- if ( status /= NF90_NOERR ) then
- write (gol,'("while closing NetCDF4 file:")'); call goErr
- write (gol,'(" file name : ",a)') trim(filep%netcdf_fname); call goErr
- TRACEBACK; status=1; return
- end if
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! done with variable list:
- call MDF_Var_List_Done( filep%Var_List, status )
- IF_NOT_OK_RETURN(status=1)
- ! done with dimension list:
- call MDF_Dim_List_Done( filep%Dim_List, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! remove item:
- call MDF_File_List_Clear_Item( File_List, hid, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! ok
- status = 0
- end subroutine MDF_Close
-
-
- ! ********************************************************************
- ! ***
- ! *** end of definition phase
- ! ***
- ! ********************************************************************
- subroutine MDF_EndDef( hid, status )
- #ifdef with_netcdf
- use NetCDF, only : NF90_EndDef
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_EndDef'
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- integer :: iftype
- integer :: ftype
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! nothing required for this format ...
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! nothing required for this format ...
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! end of definition phase:
- status = NF90_EndDef( filep%netcdf_id )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_EndDef
- ! ********************************************************************
- ! ***
- ! *** dimensions
- ! ***
- ! ********************************************************************
-
- subroutine MDF_Def_Dim( hid, name, length, dimid, status )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Def_Dim, NF90_UNLIMITED
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- character(len=*), intent(in) :: name
- integer, intent(in) :: length
- integer, intent(out) :: dimid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Def_Dim'
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Dim), pointer :: dimp
- integer :: iftype
- integer :: ftype
- #ifdef with_netcdf
- integer :: netcdf_length
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
- ! new dimension:
- call MDF_Dim_List_New_Item( filep%Dim_List, dimid, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to dimension structure:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimid, dimp, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! store:
- dimp%name = trim(name)
- dimp%length = length
- ! unlimited length ?
- dimp%unlimited = length == MDF_UNLIMITED
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! Dimensions in HDF4 are no special entities in the file,
- ! but part of each variable .
- ! The arguments stored in the dimension structure will
- ! be used to define the shape of new variables.
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! Dimensions in HDF5 are no special entities in the file,
- ! but stored in the 'data space' part of each variable .
- ! The arguments stored in the dimension structure will
- ! be used to define the shape of new variables.
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set dimension length:
- if ( dimp%unlimited ) then
- netcdf_length = NF90_UNLIMITED
- else
- netcdf_length = length
- end if
- ! define dimension:
- status = NF90_Def_Dim( filep%netcdf_id, trim(name), netcdf_length, dimp%netcdf_dimid )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Def_Dim
- ! ********************************************************************
- ! ***
- ! *** variables
- ! ***
- ! ********************************************************************
-
- subroutine MDF_Def_Var( hid, name, xtype, dimids, varid, status, &
- compression, deflate_level )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TClose_f!, H5TSet_Size_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_UNLIMITED_F
- use HDF5, only : H5PCreate_f, H5PClose_f, H5P_DATASET_CREATE_F
- use HDF5, only : H5PSet_Chunk_f, H5PSet_Deflate_f
- use HDF5, only : H5DCreate_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_CHAR, NF90_BYTE, NF90_SHORT, NF90_INT, NF90_FLOAT, NF90_DOUBLE
- use NetCDF, only : NF90_Def_Var
- #ifdef with_netcdf4
- use NetCDF, only : NF90_Def_Var_Deflate
- #endif
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- character(len=*), intent(in) :: name
- integer, intent(in) :: xtype
- integer, intent(in) :: dimids(:)
- integer, intent(out) :: varid
- integer, intent(out) :: status
-
- integer, intent(in), optional :: compression
- integer, intent(in), optional :: deflate_level ! 0-9
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Def_Var'
-
- ! --- external -----------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfCreate
- integer(hdf4_wpi), external :: sfDimID
- integer(hdf4_wpi), external :: sfSDmName
- integer(hdf4_wpi), external :: sfsCompress
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Dim), pointer :: dimp
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- integer :: idim
- #ifdef with_hdf4
- integer :: hdf4_xtype
- integer :: hdf4_shape(MAX_RANK)
- integer :: hdf4_dimid
- integer :: hdf4_comp_type
- integer :: hdf4_comp_prm(1)
- #endif
- #ifdef with_hdf5_beta
- integer :: hdf5_xtype
- integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_dcpl_id
- integer :: hdf5_deflate_level
- #endif
- #ifdef with_netcdf
- integer :: netcdf_xtype
- integer :: netcdf_dimids(MAX_RANK)
- integer :: netcdf_deflate_level
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! new variable:
- call MDF_Var_List_New_Item( filep%Var_List, varid, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! store name;
- varp%name = trim(name)
-
- ! store type:
- varp%xtype = xtype
-
- ! set kind value given type:
- call MDF_Get_Kind( varp%xtype, varp%xkind, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! number of dimensions:
- varp%ndim = size(dimids)
-
- ! dimension id's :
- varp%dimids(1:varp%ndim) = dimids
-
- ! fill shape:
- do idim = 1, varp%ndim
- ! pointer to dimension type:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimids(idim), dimp, status )
- IF_NOT_OK_RETURN(status=1)
- ! copy dimension id:
- varp%shp(idim) = dimp%length
- end do
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! set data type:
- select case ( xtype )
- case ( MDF_CHAR ) ; hdf4_xtype = DFNT_CHAR
- case ( MDF_BYTE ) ; hdf4_xtype = DFNT_INT8
- case ( MDF_SHORT ) ; hdf4_xtype = DFNT_INT16
- case ( MDF_INT ) ; hdf4_xtype = DFNT_INT32
- case ( MDF_FLOAT ) ; hdf4_xtype = DFNT_FLOAT32
- case ( MDF_DOUBLE ) ; hdf4_xtype = DFNT_FLOAT64
- case default
- write (gol,'("unsupported data type : ",i6)') xtype; call goErr
- TRACEBACK; status=1; return
- end select
-
- ! extract dimensions:
- do idim = 1, varp%ndim
- ! pointer to dimension type:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimids(idim), dimp, status )
- IF_NOT_OK_RETURN(status=1)
- ! fill dimension:
- if ( dimp%length == MDF_UNLIMITED ) then
- hdf4_shape(idim) = SD_UNLIMITED
- else
- hdf4_shape(idim) = dimp%length
- end if
- end do
-
- ! define variable:
- status = sfCreate( filep%hdf4_id, trim(name), hdf4_xtype, &
- varp%ndim, hdf4_shape(1:varp%ndim) )
- if ( status == FAIL ) then
- write (gol,'("from sfCreate :")'); call goErr
- write (gol,'(" name : ",a)') trim(name); call goErr
- write (gol,'(" hdf file : ",a)') trim(filep%hdf4_fname); call goErr
- TRACEBACK; status=1; return
- end if
- ! store
- varp%hdf4_sdid = status
-
- ! loop over dimension indices:
- do idim = 1, varp%ndim
- ! pointer to dimension type:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimids(idim), dimp, status )
- IF_NOT_OK_RETURN(status=1)
- ! select dimension with zero based index:
- status = sfDimID( varp%hdf4_sdid, idim-1 )
- if ( status == FAIL ) then
- write (gol,'("from sfDimID :")'); call goErr
- write (gol,'(" dimension index : ",i6)') idim; call goErr
- write (gol,'(" variable name : ",a)') trim(name); call goErr
- write (gol,'(" hdf file : ",a)') trim(filep%hdf4_fname); call goErr
- TRACEBACK; status=1; return
- end if
- hdf4_dimid = status
- ! set dimension name
- status = sfSDmName( hdf4_dimid, trim(dimp%name) )
- if ( status == FAIL ) then
- write (gol,'("setting dimension name :")'); call goErr
- write (gol,'(" dim name : ",a)') trim(dimp%name); call goErr
- write (gol,'(" dimension index : ",i6)') idim; call goErr
- write (gol,'(" variable name : ",a)') trim(name); call goErr
- write (gol,'(" hdf file : ",a)') trim(filep%hdf4_fname); call goErr
- TRACEBACK; status=1; return
- end if
- end do ! dimensions
-
- ! compression specified ?
- if ( present(compression) ) then
- ! apply ?
- if ( compression /= MDF_NONE ) then
- ! check ...
- if ( any( varp%shp == MDF_UNLIMITED ) ) then
- write (gol,'("HDF4 does not allow compresion of data sets with an unlimitted dimension ...")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! which one ?
- select case ( compression )
- ! deflation (=zlib)
- case ( MDF_DEFLATE )
- ! set compression type:
- hdf4_comp_type = COMP_CODE_DEFLATE
- ! set deflation level:
- if ( present(deflate_level) ) then
- hdf4_comp_prm(1) = deflate_level
- else
- hdf4_comp_prm(1) = 6
- end if
- case default
- write (gol,'("unsupported compression type : ",i6)') compression; call goErr
- TRACEBACK; status=1; return
- end select
- ! call HDF routine:
- status = sfsCompress( varp%hdf4_sdid, hdf4_comp_type, hdf4_comp_prm )
- if ( status == FAIL ) then
- write (gol,'("from sfsCompress : ")'); call goErr
- write (gol,'(" compression index : ",i6)') compression; call goErr
- write (gol,'(" compression name : ",a)') trim(MDF_COMPRESSION_NAME(compression)); call goErr
- write (gol,'(" hdf4 compress type : ",i6)') hdf4_comp_type; call goErr
- write (gol,'(" hdf4 compress param : ",i6)') hdf4_comp_prm; call goErr
- write (gol,'(" return status : ",i6)') status; call goErr
- TRACEBACK; status=1; return
- end if
- end if ! apply ?
- end if ! compression ?
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! set data type:
- select case ( xtype )
- case ( MDF_CHAR ) ; hdf5_xtype = H5T_NATIVE_CHARACTER
- case ( MDF_BYTE ) ; hdf5_xtype = H5T_STD_I8LE
- case ( MDF_SHORT ) ; hdf5_xtype = H5T_STD_I16LE
- case ( MDF_INT ) ; hdf5_xtype = H5T_NATIVE_INTEGER
- case ( MDF_FLOAT ) ; hdf5_xtype = H5T_NATIVE_REAL
- case ( MDF_DOUBLE ) ; hdf5_xtype = H5T_NATIVE_DOUBLE
- case default
- write (gol,'("unsupported data type : ",i6)') xtype; call goErr
- TRACEBACK; status=1; return
- end select
- ! data type:
- call H5TCopy_f( hdf5_xtype, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- !! set length for characters ?
- !call H5TSet_Size_f( hdf5_type_id, len(values), status )
- !IF_NOT_OK_RETURN(status=1)
-
- ! extract dimensions:
- do idim = 1, varp%ndim
- ! pointer to dimension type:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimids(idim), dimp, status )
- IF_NOT_OK_RETURN(status=1)
- ! fill dimension:
- if ( dimp%length == MDF_UNLIMITED ) then
- varp%hdf5_dims (idim) = 0
- varp%hdf5_maxdims (idim) = H5S_UNLIMITED_F
- varp%hdf5_chunkdims(idim) = 1
- varp%hdf5_chunked = .true.
- else
- varp%hdf5_dims (idim) = dimp%length
- varp%hdf5_maxdims (idim) = dimp%length
- varp%hdf5_chunkdims(idim) = dimp%length
- varp%hdf5_chunked = .false.
- end if
- end do
- ! create data space:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_space_id, status, &
- maxdims=varp%hdf5_maxdims(1:varp%ndim) )
- IF_NOT_OK_RETURN(status=1)
-
- ! dataset creation property list:
- call H5PCreate_f( H5P_DATASET_CREATE_F, hdf5_dcpl_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! for unlimited dimensions ...
- if ( varp%hdf5_chunked ) then
- call H5PSet_Chunk_f( hdf5_dcpl_id, varp%ndim, varp%hdf5_chunkdims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! compression specified ?
- if ( present(compression) ) then
- ! which one ?
- select case ( compression )
- ! no compression ...
- case ( MDF_NONE )
- ! nothing to be done
- ! deflation (=gzip)
- case ( MDF_DEFLATE )
- ! set deflation level:
- if ( present(deflate_level) ) then
- hdf5_deflate_level = deflate_level
- else
- hdf5_deflate_level = 0
- end if
- ! add filter to property list:
- call H5PSet_Deflate_f( hdf5_dcpl_id, hdf5_deflate_level, status )
- IF_NOT_OK_RETURN(status=1)
- case default
- write (gol,'("unsupported compression type : ",i6)') compression; call goErr
- TRACEBACK; status=1; return
- end select
- end if ! compression ?
-
- ! store name:
- varp%hdf5_name = trim(name)
- ! define variable:
- call H5DCreate_f( filep%hdf5_file_id, trim(name), hdf5_type_id, hdf5_space_id, varp%hdf5_dataset_id, status, &
- dcpl_id=hdf5_dcpl_id )
- IF_NOT_OK_RETURN(status=1)
- ! close property list:
- call H5PClose_f( hdf5_dcpl_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! close data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! close data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! set data type:
- select case ( xtype )
- case ( MDF_CHAR ) ; netcdf_xtype = NF90_CHAR
- case ( MDF_BYTE ) ; netcdf_xtype = NF90_BYTE
- case ( MDF_SHORT ) ; netcdf_xtype = NF90_SHORT
- case ( MDF_INT ) ; netcdf_xtype = NF90_INT
- case ( MDF_FLOAT ) ; netcdf_xtype = NF90_FLOAT
- case ( MDF_DOUBLE ) ; netcdf_xtype = NF90_DOUBLE
- case default
- write (gol,'("unsupported data type : ",i6)') xtype; call goErr
- TRACEBACK; status=1; return
- end select
-
- ! extract dimensions:
- do idim = 1, varp%ndim
- ! pointer to dimension type:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimids(idim), dimp, status )
- IF_NOT_OK_RETURN(status=1)
- ! copy dimension id:
- netcdf_dimids(idim) = dimp%netcdf_dimid
- end do
-
- ! define variable:
- status = NF90_Def_Var( filep%netcdf_id, trim(name), netcdf_xtype, &
- netcdf_dimids(1:varp%ndim), varp%netcdf_varid )
- IF_NF90_NOT_OK_RETURN(status=1)
-
- ! compression specified ?
- if ( present(compression) ) then
- ! which one ?
- select case ( compression )
- ! no compression ...
- case ( MDF_NONE )
- ! nothing to be done
- #ifdef with_netcdf4
- ! deflation (=zlib)
- case ( MDF_DEFLATE )
- ! set deflation level:
- if ( present(deflate_level) ) then
- netcdf_deflate_level = deflate_level
- else
- netcdf_deflate_level = 0
- end if
- ! set parameters (without shuffle, with deflate)
- status = NF90_Def_Var_Deflate( filep%netcdf_id, varp%netcdf_varid, 0, 1, netcdf_deflate_level )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- case default
- write (gol,'("unsupported compression type : ",i6)') compression; call goErr
- write (gol,'("(might be necessary to compile with macro `with_netcdf4` defined)")'); call goErr
- TRACEBACK; status=1; return
- end select
- end if ! compression ?
-
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! no attributes yet:
- varp%natt = 0
-
- ! ok
- status = 0
- end subroutine MDF_Def_Var
- ! ***
- !--------------------------------------------------------------------------
- ! TM5 !
- !--------------------------------------------------------------------------
- !BOP
- !
- ! !IROUTINE: MDF_Var_Par_Access
- !
- ! !DESCRIPTION: Wrapper around NF90_Var_Par_Access. It changes whether read
- ! /write operations on a parallel file system are performed
- ! collectively or independently (the default) on the variable.
- !\\
- !\\
- ! !INTERFACE:
- !
- subroutine MDF_Var_Par_Access( hid, varid, par_access_mode, status )
- !
- ! !USES:
- !
- #ifdef with_netcdf4_par
- use NetCDF, only : NF90_INDEPENDENT, NF90_COLLECTIVE
- use NetCDF, only : NF90_Var_Par_Access
- #endif
- !
- ! !INPUT PARAMETERS:
- !
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer, intent(in) :: par_access_mode
- !
- ! !OUTPUT PARAMETERS:
- !
- integer, intent(out) :: status
- !
- ! !REVISION HISTORY:
- ! 13 Jan 2012 - Philippe Le Sager - added COLLECTIVE case
- !
- ! !REMARKS:
- !
- !EOP
- !------------------------------------------------------------------------
- !BOC
- character(len=*), parameter :: rname = mname//'/MDF_Var_Par_Access'
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_netcdf4_par
- integer :: netcdf_par_access_mode
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! opened for parallel i/o ?
- if ( filep%parallel ) then
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_netcdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- #ifdef with_netcdf4_par
- ! set mode:
- select case ( par_access_mode )
- case ( MDF_INDEPENDENT ) ; netcdf_par_access_mode = NF90_INDEPENDENT
- case ( MDF_COLLECTIVE ) ; netcdf_par_access_mode = NF90_COLLECTIVE
- case default
- write (gol,'("unsupported parallel access mode : ",i6)') par_access_mode; call goErr
- TRACEBACK; status=1; return
- end select
- ! set access mode:
- status = NF90_Var_Par_Access( filep%netcdf_id, varp%netcdf_varid, netcdf_par_access_mode )
- IF_NF90_NOT_OK_RETURN(status=1)
- #else
- write (gol,'("Parallel access of NetCDF requires compilation with `with_netcdf4_par` macro defined.")'); call goErr
- TRACEBACK; status=1; return
- #endif
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- end if ! parallel i/o
-
- ! ok
- status = 0
- end subroutine MDF_Var_Par_Access
- !EOC
- ! ***
-
- subroutine MDF_Put_Var_c1_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: values
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_c1_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:1) = (/len(values)/)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! write:
- status = sfWData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:1) = (/len(values)/)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_CHARACTER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_c1_1d
- ! ***
-
- subroutine MDF_Get_Var_c1_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(out) :: values
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_c1_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:1) = (/ len(values) /)
-
- ! read:
- status = sfRData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_c1_1d
-
-
- ! ***
-
- subroutine MDF_Put_Var_c1_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_c1_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:2) = (/len(values),shape(values)/)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! write:
- status = sfWData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:2) = (/len(values),shape(values)/)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_CHARACTER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_c1_2d
- ! ***
-
- subroutine MDF_Get_Var_c1_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(out) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_c1_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:2) = (/ len(values), shape(values) /)
-
- ! read:
- status = sfRData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_c1_2d
-
-
- ! ***
-
- subroutine MDF_Put_Var_c1_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_c1_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:3) = (/len(values),shape(values)/)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! write:
- status = sfWData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:3) = (/len(values),shape(values)/)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_CHARACTER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_c1_3d
- ! ***
-
- subroutine MDF_Get_Var_c1_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(out) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_c1_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:3) = (/ len(values), shape(values) /)
-
- ! read:
- status = sfRData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_c1_3d
-
-
- ! ***
-
- subroutine MDF_Put_Var_c1_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_c1_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:4) = (/len(values),shape(values)/)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! write:
- status = sfWData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:4) = (/len(values),shape(values)/)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_CHARACTER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_c1_4d
- ! ***
-
- subroutine MDF_Get_Var_c1_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(out) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_c1_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:4) = (/ len(values), shape(values) /)
-
- ! read:
- status = sfRData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_c1_4d
-
-
- ! ***
-
- subroutine MDF_Put_Var_c1_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_c1_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:5) = (/len(values),shape(values)/)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! write:
- status = sfWData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:5) = (/len(values),shape(values)/)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_CHARACTER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_c1_5d
- ! ***
-
- subroutine MDF_Get_Var_c1_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(out) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_c1_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:5) = (/ len(values), shape(values) /)
-
- ! read:
- status = sfRData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_c1_5d
-
-
- ! ***
-
- subroutine MDF_Put_Var_c1_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_c1_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:6) = (/len(values),shape(values)/)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! write:
- status = sfWData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:6) = (/len(values),shape(values)/)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_CHARACTER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_c1_6d
- ! ***
-
- subroutine MDF_Get_Var_c1_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(out) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_c1_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:6) = (/ len(values), shape(values) /)
-
- ! read:
- status = sfRData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_c1_6d
-
-
- ! ***
-
- subroutine MDF_Put_Var_c1_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_c1_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:7) = (/len(values),shape(values)/)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! write:
- status = sfWData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:7) = (/len(values),shape(values)/)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_CHARACTER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_c1_7d
- ! ***
-
- subroutine MDF_Get_Var_c1_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(out) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_c1_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:7) = (/ len(values), shape(values) /)
-
- ! read:
- status = sfRData( varp%hdf4_sdid, hdf4_offset, hdf4_stride, hdf4_count, values )
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_c1_7d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i1_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(in) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i1_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:1) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:1) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i1_1d
- ! ***
-
- subroutine MDF_Get_Var_i1_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(out) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i1_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:1) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=1)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=1)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=1)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=1)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=1)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=1)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i1_1d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i1_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(in) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i1_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:)
- integer(2), allocatable :: values_int2(:,:)
- integer(4), allocatable :: values_int4(:,:)
- integer(8), allocatable :: values_int8(:,:)
- real(4), allocatable :: values_real4(:,:)
- real(8), allocatable :: values_real8(:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:2) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:2) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i1_2d
- ! ***
-
- subroutine MDF_Get_Var_i1_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(out) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i1_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:)
- integer(2), allocatable :: values_int2(:,:)
- integer(4), allocatable :: values_int4(:,:)
- integer(8), allocatable :: values_int8(:,:)
- real(4), allocatable :: values_real4(:,:)
- real(8), allocatable :: values_real8(:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:2) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=1)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=1)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=1)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=1)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=1)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=1)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i1_2d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i1_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(in) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i1_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:)
- integer(2), allocatable :: values_int2(:,:,:)
- integer(4), allocatable :: values_int4(:,:,:)
- integer(8), allocatable :: values_int8(:,:,:)
- real(4), allocatable :: values_real4(:,:,:)
- real(8), allocatable :: values_real8(:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:3) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:3) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i1_3d
- ! ***
-
- subroutine MDF_Get_Var_i1_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(out) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i1_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:)
- integer(2), allocatable :: values_int2(:,:,:)
- integer(4), allocatable :: values_int4(:,:,:)
- integer(8), allocatable :: values_int8(:,:,:)
- real(4), allocatable :: values_real4(:,:,:)
- real(8), allocatable :: values_real8(:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:3) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=1)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=1)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=1)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=1)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=1)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=1)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i1_3d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i1_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(in) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i1_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:4) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:4) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i1_4d
- ! ***
-
- subroutine MDF_Get_Var_i1_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(out) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i1_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:4) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=1)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=1)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=1)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=1)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=1)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=1)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i1_4d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i1_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(in) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i1_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:5) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:5) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i1_5d
- ! ***
-
- subroutine MDF_Get_Var_i1_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(out) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i1_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:5) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=1)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=1)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=1)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=1)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=1)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=1)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i1_5d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i1_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(in) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i1_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:6) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:6) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i1_6d
- ! ***
-
- subroutine MDF_Get_Var_i1_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(out) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i1_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:6) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=1)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=1)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=1)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=1)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=1)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=1)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i1_6d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i1_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(in) :: values(:,:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i1_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:7) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:7) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i1_7d
- ! ***
-
- subroutine MDF_Get_Var_i1_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(1), intent(out) :: values(:,:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i1_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:7) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=1)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=1)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=1)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=1)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=1)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=1)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i1_7d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i2_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(in) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i2_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:1) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:1) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i2_1d
- ! ***
-
- subroutine MDF_Get_Var_i2_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(out) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i2_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:1) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=2)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=2)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=2)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=2)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=2)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=2)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i2_1d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i2_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(in) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i2_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:)
- integer(2), allocatable :: values_int2(:,:)
- integer(4), allocatable :: values_int4(:,:)
- integer(8), allocatable :: values_int8(:,:)
- real(4), allocatable :: values_real4(:,:)
- real(8), allocatable :: values_real8(:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:2) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:2) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i2_2d
- ! ***
-
- subroutine MDF_Get_Var_i2_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(out) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i2_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:)
- integer(2), allocatable :: values_int2(:,:)
- integer(4), allocatable :: values_int4(:,:)
- integer(8), allocatable :: values_int8(:,:)
- real(4), allocatable :: values_real4(:,:)
- real(8), allocatable :: values_real8(:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:2) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=2)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=2)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=2)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=2)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=2)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=2)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i2_2d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i2_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(in) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i2_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:)
- integer(2), allocatable :: values_int2(:,:,:)
- integer(4), allocatable :: values_int4(:,:,:)
- integer(8), allocatable :: values_int8(:,:,:)
- real(4), allocatable :: values_real4(:,:,:)
- real(8), allocatable :: values_real8(:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:3) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:3) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i2_3d
- ! ***
-
- subroutine MDF_Get_Var_i2_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(out) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i2_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:)
- integer(2), allocatable :: values_int2(:,:,:)
- integer(4), allocatable :: values_int4(:,:,:)
- integer(8), allocatable :: values_int8(:,:,:)
- real(4), allocatable :: values_real4(:,:,:)
- real(8), allocatable :: values_real8(:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:3) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=2)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=2)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=2)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=2)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=2)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=2)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i2_3d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i2_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(in) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i2_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:4) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:4) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i2_4d
- ! ***
-
- subroutine MDF_Get_Var_i2_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(out) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i2_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:4) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=2)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=2)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=2)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=2)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=2)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=2)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i2_4d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i2_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(in) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i2_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:5) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:5) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i2_5d
- ! ***
-
- subroutine MDF_Get_Var_i2_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(out) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i2_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:5) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=2)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=2)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=2)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=2)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=2)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=2)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i2_5d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i2_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(in) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i2_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:6) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:6) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i2_6d
- ! ***
-
- subroutine MDF_Get_Var_i2_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(out) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i2_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:6) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=2)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=2)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=2)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=2)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=2)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=2)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i2_6d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i2_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(in) :: values(:,:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i2_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:7) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:7) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, int(values), &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i2_7d
- ! ***
-
- subroutine MDF_Get_Var_i2_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(2), intent(out) :: values(:,:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i2_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:7) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=2)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=2)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=2)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=2)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=2)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=2)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i2_7d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i4_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(in) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i4_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:1) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:1) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i4_1d
- ! ***
-
- subroutine MDF_Get_Var_i4_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(out) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i4_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:1) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i4_1d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i4_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(in) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i4_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:)
- integer(2), allocatable :: values_int2(:,:)
- integer(4), allocatable :: values_int4(:,:)
- integer(8), allocatable :: values_int8(:,:)
- real(4), allocatable :: values_real4(:,:)
- real(8), allocatable :: values_real8(:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:2) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:2) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i4_2d
- ! ***
-
- subroutine MDF_Get_Var_i4_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(out) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i4_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:)
- integer(2), allocatable :: values_int2(:,:)
- integer(4), allocatable :: values_int4(:,:)
- integer(8), allocatable :: values_int8(:,:)
- real(4), allocatable :: values_real4(:,:)
- real(8), allocatable :: values_real8(:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:2) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i4_2d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i4_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(in) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i4_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:)
- integer(2), allocatable :: values_int2(:,:,:)
- integer(4), allocatable :: values_int4(:,:,:)
- integer(8), allocatable :: values_int8(:,:,:)
- real(4), allocatable :: values_real4(:,:,:)
- real(8), allocatable :: values_real8(:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:3) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:3) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i4_3d
- ! ***
-
- subroutine MDF_Get_Var_i4_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(out) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i4_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:)
- integer(2), allocatable :: values_int2(:,:,:)
- integer(4), allocatable :: values_int4(:,:,:)
- integer(8), allocatable :: values_int8(:,:,:)
- real(4), allocatable :: values_real4(:,:,:)
- real(8), allocatable :: values_real8(:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:3) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i4_3d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i4_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(in) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i4_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:4) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:4) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i4_4d
- ! ***
-
- subroutine MDF_Get_Var_i4_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(out) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i4_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:4) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i4_4d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i4_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(in) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i4_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:5) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:5) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i4_5d
- ! ***
-
- subroutine MDF_Get_Var_i4_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(out) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i4_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:5) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i4_5d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i4_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(in) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i4_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:6) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:6) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i4_6d
- ! ***
-
- subroutine MDF_Get_Var_i4_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(out) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i4_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:6) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i4_6d
-
-
- ! ***
-
- subroutine MDF_Put_Var_i4_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(in) :: values(:,:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_i4_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:7) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:7) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_INTEGER, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_i4_7d
- ! ***
-
- subroutine MDF_Get_Var_i4_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer(4), intent(out) :: values(:,:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_i4_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:7) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = int(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = int(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = int(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = int(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = int(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = int(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_i4_7d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r4_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(in) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r4_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:1) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:1) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_REAL, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r4_1d
- ! ***
-
- subroutine MDF_Get_Var_r4_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(out) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r4_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:1) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r4_1d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r4_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(in) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r4_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:)
- integer(2), allocatable :: values_int2(:,:)
- integer(4), allocatable :: values_int4(:,:)
- integer(8), allocatable :: values_int8(:,:)
- real(4), allocatable :: values_real4(:,:)
- real(8), allocatable :: values_real8(:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:2) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:2) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_REAL, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r4_2d
- ! ***
-
- subroutine MDF_Get_Var_r4_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(out) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r4_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:)
- integer(2), allocatable :: values_int2(:,:)
- integer(4), allocatable :: values_int4(:,:)
- integer(8), allocatable :: values_int8(:,:)
- real(4), allocatable :: values_real4(:,:)
- real(8), allocatable :: values_real8(:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:2) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r4_2d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r4_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(in) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r4_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:)
- integer(2), allocatable :: values_int2(:,:,:)
- integer(4), allocatable :: values_int4(:,:,:)
- integer(8), allocatable :: values_int8(:,:,:)
- real(4), allocatable :: values_real4(:,:,:)
- real(8), allocatable :: values_real8(:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:3) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:3) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_REAL, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r4_3d
- ! ***
-
- subroutine MDF_Get_Var_r4_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(out) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r4_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:)
- integer(2), allocatable :: values_int2(:,:,:)
- integer(4), allocatable :: values_int4(:,:,:)
- integer(8), allocatable :: values_int8(:,:,:)
- real(4), allocatable :: values_real4(:,:,:)
- real(8), allocatable :: values_real8(:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:3) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r4_3d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r4_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(in) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r4_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:4) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:4) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_REAL, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r4_4d
- ! ***
-
- subroutine MDF_Get_Var_r4_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(out) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r4_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:4) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r4_4d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r4_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(in) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r4_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:5) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:5) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_REAL, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r4_5d
- ! ***
-
- subroutine MDF_Get_Var_r4_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(out) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r4_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:5) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r4_5d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r4_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(in) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r4_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:6) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:6) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_REAL, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r4_6d
- ! ***
-
- subroutine MDF_Get_Var_r4_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(out) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r4_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:6) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r4_6d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r4_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(in) :: values(:,:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r4_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:7) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:7) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_REAL, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r4_7d
- ! ***
-
- subroutine MDF_Get_Var_r4_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(4), intent(out) :: values(:,:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r4_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:7) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r4_7d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r8_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(in) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r8_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:1) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:1) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_DOUBLE, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r8_1d
- ! ***
-
- subroutine MDF_Get_Var_r8_1d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(out) :: values(:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r8_1d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:1) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=8)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=8)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=8)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=8)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=8)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=8)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r8_1d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r8_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(in) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r8_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:)
- integer(2), allocatable :: values_int2(:,:)
- integer(4), allocatable :: values_int4(:,:)
- integer(8), allocatable :: values_int8(:,:)
- real(4), allocatable :: values_real4(:,:)
- real(8), allocatable :: values_real8(:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:2) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:2) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_DOUBLE, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r8_2d
- ! ***
-
- subroutine MDF_Get_Var_r8_2d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(out) :: values(:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r8_2d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:)
- integer(2), allocatable :: values_int2(:,:)
- integer(4), allocatable :: values_int4(:,:)
- integer(8), allocatable :: values_int8(:,:)
- real(4), allocatable :: values_real4(:,:)
- real(8), allocatable :: values_real8(:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:2) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=8)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=8)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=8)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=8)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=8)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=8)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r8_2d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r8_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(in) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r8_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:)
- integer(2), allocatable :: values_int2(:,:,:)
- integer(4), allocatable :: values_int4(:,:,:)
- integer(8), allocatable :: values_int8(:,:,:)
- real(4), allocatable :: values_real4(:,:,:)
- real(8), allocatable :: values_real8(:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:3) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:3) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_DOUBLE, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r8_3d
- ! ***
-
- subroutine MDF_Get_Var_r8_3d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(out) :: values(:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r8_3d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:)
- integer(2), allocatable :: values_int2(:,:,:)
- integer(4), allocatable :: values_int4(:,:,:)
- integer(8), allocatable :: values_int8(:,:,:)
- real(4), allocatable :: values_real4(:,:,:)
- real(8), allocatable :: values_real8(:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:3) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=8)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=8)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=8)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=8)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=8)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=8)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r8_3d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r8_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(in) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r8_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:4) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:4) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_DOUBLE, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r8_4d
- ! ***
-
- subroutine MDF_Get_Var_r8_4d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(out) :: values(:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r8_4d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:4) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=8)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=8)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=8)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=8)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=8)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=8)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r8_4d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r8_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(in) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r8_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:5) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:5) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_DOUBLE, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r8_5d
- ! ***
-
- subroutine MDF_Get_Var_r8_5d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(out) :: values(:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r8_5d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:5) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=8)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=8)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=8)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=8)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=8)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=8)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r8_5d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r8_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(in) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r8_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:6) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:6) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_DOUBLE, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r8_6d
- ! ***
-
- subroutine MDF_Get_Var_r8_6d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(out) :: values(:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r8_6d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:6) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=8)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=8)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=8)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=8)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=8)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=8)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r8_6d
-
-
- ! ***
-
- subroutine MDF_Put_Var_r8_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_Simple_f, H5SClose_f, H5SSelect_Hyperslab_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F, H5S_SELECT_SET_F
- use HDF5, only : H5DWrite_f, H5DSet_Extent_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(in) :: values(:,:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Var_r8_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfWData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
- #endif
- #ifdef with_hdf5_beta
- !integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_file_space_id
- integer(HSIZE_T) :: hdf5_offset(MAX_RANK)
- integer(HSIZE_T) :: hdf5_stride(MAX_RANK)
- integer(HSIZE_T) :: hdf5_count (MAX_RANK)
- #endif
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:,:)
-
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be written exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!) and stride with default values:
- hdf4_offset = 0
- hdf4_stride = 1
- ! count is by default the shape; padd with singleton dimensions:
- hdf4_count = 1; hdf4_count(1:7) = shape(values)
- ! replace by optional arguments if necessary:
- if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- if ( present(count ) ) hdf4_count (1:varp%ndim) = count
-
- ! test target type;
- ! convert to required kind before entering sfWData,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int1 = int(values,kind=1)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int2 = int(values,kind=2)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int4 = int(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real4 = real(values,kind=4)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real8 = real(values,kind=8)
- status = sfWData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), &
- hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("writing hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i12)') size(values); call goErr
- write (gol,'("(writing a slice to a compressed data set ?)")'); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF5")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf5_offset = 0; if ( present(start ) ) hdf5_offset(1:varp%ndim) = start-1
- hdf5_stride = 1; if ( present(stride) ) hdf5_stride(1:varp%ndim) = stride
- hdf5_count = 1 ! default singleton dimension
- if ( present(count) ) then
- hdf5_count(1:varp%ndim) = count
- else
- hdf5_count(1:7) = shape(values)
- end if
- ! new dimension:
- varp%hdf5_dims = max( varp%hdf5_dims, hdf5_offset+hdf5_count )
- ! target data space in file:
- call H5SCreate_Simple_f( varp%ndim, varp%hdf5_dims(1:varp%ndim), hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! chunked dataset ?
- if ( varp%hdf5_chunked ) then
- ! reset extend:
- call H5DSet_Extent_f( varp%hdf5_dataset_id, varp%hdf5_dims(1:varp%ndim), status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! select hyperslab:
- call H5SSelect_Hyperslab_f( hdf5_file_space_id, H5S_SELECT_SET_F, &
- hdf5_offset(1:varp%ndim), hdf5_count(1:varp%ndim), status, &
- stride=hdf5_stride(1:varp%ndim) )
- ! write data:
- call H5DWrite_f( varp%hdf5_dataset_id, H5T_NATIVE_DOUBLE, values, &
- int(shape(values),kind=HSIZE_T), status, &
- file_space_id=hdf5_file_space_id )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_file_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- ! test target type:
- ! convert to required kind before entering NF90_Put_Var,
- ! otherwise segmentation faults on some machines ...
- select case ( varp%xtype )
-
- case ( MDF_BYTE )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int1 = int(values,kind=1)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int1, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int1 )
-
- case ( MDF_SHORT )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int2 = int(values,kind=2)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int2, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int2 )
-
- case ( MDF_INT )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_int4 = int(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_int4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_int4 )
-
- case ( MDF_FLOAT )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real4 = real(values,kind=4)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real4, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real4 )
-
- case ( MDF_DOUBLE )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- values_real8 = real(values,kind=8)
- status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values_real8, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- deallocate( values_real8 )
-
- case default
- write (gol,'("not implemented yet for output type : ",i6)') varp%xtype; call goPr
- TRACEBACK; status=1; return
- end select
-
- ! just put; let netcdf library convert the right kind:
- !status = NF90_Put_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- ! start, count, stride, map )
- !IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Put_Var_r8_7d
- ! ***
-
- subroutine MDF_Get_Var_r8_7d( hid, varid, values, status, &
- start, count, stride, map )
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Var
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- real(8), intent(out) :: values(:,:,:,:,:,:,:)
- integer, intent(out) :: status
- integer, intent(in), optional :: start (:)
- integer, intent(in), optional :: count (:)
- integer, intent(in), optional :: stride(:)
- integer, intent(in), optional :: map (:)
-
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Var_r8_7d'
-
- ! --- external -----------------------------------
-
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfRData
- #endif
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_offset(MAX_RANK)
- integer :: hdf4_stride(MAX_RANK)
- integer :: hdf4_count(MAX_RANK)
-
- integer(1), allocatable :: values_int1(:,:,:,:,:,:,:)
- integer(2), allocatable :: values_int2(:,:,:,:,:,:,:)
- integer(4), allocatable :: values_int4(:,:,:,:,:,:,:)
- integer(8), allocatable :: values_int8(:,:,:,:,:,:,:)
- real(4), allocatable :: values_real4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_real8(:,:,:,:,:,:,:)
-
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! check ...
- if ( size(shape(values)) > varp%ndim ) then
- write (gol,'("Rank of values to be read exceeds variable dimension:")'); call goErr
- write (gol,'(" rank values : ",i6)') size(shape(values)); call goErr
- write (gol,'(" variable dimension : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( present(start ) ) then
- if ( size(start ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size start : ",i6)') size(start ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(count ) ) then
- if ( size(count ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size count : ",i6)') size(count ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(stride ) ) then
- if ( size(stride ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size stride : ",i6)') size(stride ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
- if ( present(map ) ) then
- if ( size(map ) /= varp%ndim ) then
- write (gol,'("Size of position argument not equal to variable dimension:")'); call goErr
- write (gol,'(" size map : ",i6)') size(map ); call goErr
- write (gol,'(" var dim : ",i6)') varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! check ...
- if ( present(map ) ) then
- write (gol,'("argument `map` not supported for HDF4")'); call goErr
- TRACEBACK; status=1; return
- end if
- ! fill offset (zero based!), stride, and count :
- hdf4_offset = 0; if ( present(start ) ) hdf4_offset(1:varp%ndim) = start-1
- hdf4_stride = 1; if ( present(stride) ) hdf4_stride(1:varp%ndim) = stride
- hdf4_count = 1 ! default singleton dimension
-
- hdf4_count(1:7) = shape(values)
-
- ! test source type:
- select case ( varp%hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int1 )
- values = real(values_int1,kind=8)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int2 )
- values = real(values_int2,kind=8)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int4 )
- values = real(values_int4,kind=8)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_int8 )
- values = real(values_int8,kind=8)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real4 )
- values = real(values_real4,kind=8)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(size(values,1),size(values,2),size(values,3),size(values,4),size(values,5),size(values,6),size(values,7)) )
- status = sfRData( varp%hdf4_sdid, hdf4_offset(1:varp%ndim), hdf4_stride(1:varp%ndim), hdf4_count(1:varp%ndim), values_real8 )
- values = real(values_real8,kind=8)
- deallocate( values_real8 )
- case default
- write (gol,'("unsupported hdf4 variable type : ",i6)') varp%hdf4_xtype; call goPr
- TRACEBACK; status=1; return
- end select
- if ( status == FAIL ) then
- write (gol,'("reading hdf4 data set:")'); call goErr
- write (gol,'(" file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" data set : ",a)') trim(varp%name); call goErr
- write (gol,'(" offset : ",100i4)') hdf4_offset(1:varp%ndim); call goErr
- write (gol,'(" stride : ",100i4)') hdf4_stride(1:varp%ndim); call goErr
- write (gol,'(" count : ",100i4)') hdf4_count (1:varp%ndim); call goErr
- write (gol,'(" size : ",i6)') size(values); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! read values, converted automatically:
- status = NF90_Get_Var( filep%netcdf_id, varp%netcdf_varid, values, &
- start, count, stride, map )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
- end subroutine MDF_Get_Var_r8_7d
-
-
- ! ***
- ! ********************************************************************
- ! ***
- ! *** attributes
- ! ***
- ! ********************************************************************
-
-
- subroutine MDF_Put_Att_c1_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- character(len=*), intent(in) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_c1_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! store character attribute:
- status = sfSCAtt( hdf4_id, trim(name), DFNT_CHAR, len(values), values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_CHARACTER, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! set length:
- call H5TSet_Size_f( hdf5_type_id, len(values), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SCALAR_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, hdf5_type_id, values, int((/len(values)/),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_c1_0d
-
-
- ! ***
- subroutine MDF_Get_Att_c1_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- character(len=*), intent(out) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_c1_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! check ...
- if ( hdf4_length > len(values) ) then
- write (gol,'("length of character attribute `",a,"` (",i6,") exceeds output length (",i6,") ;")') &
- trim(name), hdf4_length, len(values); call goErr
- TRACEBACK; status=1; return
- end if
- ! read character attribute:
- status = sfRCAtt( hdf4_id, hdf4_iatt, values )
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! truncate ...
- values = values(1:hdf4_length)
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_CHARACTER, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! set length:
- call H5TSet_Size_f( hdf5_type_id, len(values), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! read:
- call H5ARead_f( hdf5_attr_id, hdf5_type_id, values, int((/len(values)/),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_c1_0d
-
-
-
-
-
- subroutine MDF_Put_Att_i1_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(1), intent(in) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_i1_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! store numerical attribute:
- status = sfSNAtt( hdf4_id, trim(name), DFNT_INT8, 1, values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_STD_I8LE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SCALAR_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, H5T_NATIVE_INTEGER, int(values), int((/1/),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_i1_0d
-
-
- ! ***
- subroutine MDF_Get_Att_i1_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(1), intent(out) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_i1_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- integer(1) :: values_int1
- integer(2) :: values_int2
- integer(4) :: values_int4
- integer(8) :: values_int8
- real(4) :: values_real4
- real(8) :: values_real8
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- integer(4) :: hdf5_values_int4
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! read numerical attribute:
- select case ( hdf4_xtype )
- case ( DFNT_INT8 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int1 )
- values = int(values_int1,kind=1)
- case ( DFNT_INT16 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int2 )
- values = int(values_int2,kind=1)
- case ( DFNT_INT32 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int4 )
- values = int(values_int4,kind=1)
- case ( DFNT_INT64 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int8 )
- values = int(values_int8,kind=1)
- case ( DFNT_FLOAT32 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real4 )
- values = int(values_real4,kind=1)
- case ( DFNT_FLOAT64 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real8 )
- values = int(values_real8,kind=1)
- case default
- write (gol,'("not implemented for hdf4 data type ",i6)') hdf4_xtype
- TRACEBACK; status=1; return
- end select
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_STD_I8LE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! read into integer(4), since no specific routines for kinds 1 and 2 seem available::
- call H5ARead_f( hdf5_attr_id, H5T_NATIVE_INTEGER, hdf5_values_int4, int((/1/),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! convert:
- values = int(hdf5_values_int4,1)
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_i1_0d
-
-
-
-
-
- subroutine MDF_Put_Att_i1_1d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(1), intent(in) :: values(:)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_i1_1d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! strore numerical attribute:
- status = sfSNAtt( hdf4_id, trim(name), DFNT_INT8, size(values), values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_STD_I8LE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SIMPLE_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! set extent of the data space:
- call H5SSet_Extent_Simple_f( hdf5_space_id, 1, int(shape(values),kind=HSIZE_T), int(shape(values),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, H5T_NATIVE_INTEGER, int(values), int(shape(values),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_i1_1d
-
-
- ! ***
- subroutine MDF_Get_Att_i1_1d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(1), intent(out) :: values(:)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_i1_1d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- integer(4), allocatable :: hdf5_values_int4(:)
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! read numerical attribute:
- select case ( hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int1 )
- values = int(values_int1,kind=1)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int2 )
- values = int(values_int2,kind=1)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int4 )
- values = int(values_int4,kind=1)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int8 )
- values = int(values_int8,kind=1)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real4 )
- values = int(values_real4,kind=1)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real8 )
- values = int(values_real8,kind=1)
- deallocate( values_real8 )
- case default
- write (gol,'("not implemented for hdf4 data type ",i6)') hdf4_xtype
- TRACEBACK; status=1; return
- end select
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_STD_I8LE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! storage:
- allocate( hdf5_values_int4(size(values)) )
-
- ! read into integer(4), since no specific routines for kinds 1 and 2 seem available::
- call H5ARead_f( hdf5_attr_id, H5T_NATIVE_INTEGER, hdf5_values_int4, int(shape(values),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! convert:
- values = int(hdf5_values_int4,1)
-
- ! clear:
- deallocate( hdf5_values_int4 )
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_i1_1d
-
-
-
-
-
- subroutine MDF_Put_Att_i2_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(2), intent(in) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_i2_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! store numerical attribute:
- status = sfSNAtt( hdf4_id, trim(name), DFNT_INT16, 1, values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_STD_I16LE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SCALAR_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, H5T_NATIVE_INTEGER, int(values), int((/1/),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_i2_0d
-
-
- ! ***
- subroutine MDF_Get_Att_i2_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(2), intent(out) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_i2_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- integer(1) :: values_int1
- integer(2) :: values_int2
- integer(4) :: values_int4
- integer(8) :: values_int8
- real(4) :: values_real4
- real(8) :: values_real8
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- integer(4) :: hdf5_values_int4
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! read numerical attribute:
- select case ( hdf4_xtype )
- case ( DFNT_INT8 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int1 )
- values = int(values_int1,kind=2)
- case ( DFNT_INT16 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int2 )
- values = int(values_int2,kind=2)
- case ( DFNT_INT32 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int4 )
- values = int(values_int4,kind=2)
- case ( DFNT_INT64 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int8 )
- values = int(values_int8,kind=2)
- case ( DFNT_FLOAT32 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real4 )
- values = int(values_real4,kind=2)
- case ( DFNT_FLOAT64 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real8 )
- values = int(values_real8,kind=2)
- case default
- write (gol,'("not implemented for hdf4 data type ",i6)') hdf4_xtype
- TRACEBACK; status=1; return
- end select
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_STD_I16LE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! read into integer(4), since no specific routines for kinds 1 and 2 seem available::
- call H5ARead_f( hdf5_attr_id, H5T_NATIVE_INTEGER, hdf5_values_int4, int((/1/),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! convert:
- values = int(hdf5_values_int4,2)
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_i2_0d
-
-
-
-
-
- subroutine MDF_Put_Att_i2_1d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(2), intent(in) :: values(:)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_i2_1d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! strore numerical attribute:
- status = sfSNAtt( hdf4_id, trim(name), DFNT_INT16, size(values), values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_STD_I16LE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SIMPLE_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! set extent of the data space:
- call H5SSet_Extent_Simple_f( hdf5_space_id, 1, int(shape(values),kind=HSIZE_T), int(shape(values),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, H5T_NATIVE_INTEGER, int(values), int(shape(values),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_i2_1d
-
-
- ! ***
- subroutine MDF_Get_Att_i2_1d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(2), intent(out) :: values(:)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_i2_1d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- integer(4), allocatable :: hdf5_values_int4(:)
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! read numerical attribute:
- select case ( hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int1 )
- values = int(values_int1,kind=2)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int2 )
- values = int(values_int2,kind=2)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int4 )
- values = int(values_int4,kind=2)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int8 )
- values = int(values_int8,kind=2)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real4 )
- values = int(values_real4,kind=2)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real8 )
- values = int(values_real8,kind=2)
- deallocate( values_real8 )
- case default
- write (gol,'("not implemented for hdf4 data type ",i6)') hdf4_xtype
- TRACEBACK; status=1; return
- end select
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_STD_I16LE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! storage:
- allocate( hdf5_values_int4(size(values)) )
-
- ! read into integer(4), since no specific routines for kinds 1 and 2 seem available::
- call H5ARead_f( hdf5_attr_id, H5T_NATIVE_INTEGER, hdf5_values_int4, int(shape(values),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! convert:
- values = int(hdf5_values_int4,2)
-
- ! clear:
- deallocate( hdf5_values_int4 )
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_i2_1d
-
-
-
-
-
- subroutine MDF_Put_Att_i4_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(4), intent(in) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_i4_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! store numerical attribute:
- status = sfSNAtt( hdf4_id, trim(name), DFNT_INT32, 1, values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_INTEGER, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SCALAR_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, H5T_NATIVE_INTEGER, int(values), int((/1/),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_i4_0d
-
-
- ! ***
- subroutine MDF_Get_Att_i4_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(4), intent(out) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_i4_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- integer(1) :: values_int1
- integer(2) :: values_int2
- integer(4) :: values_int4
- integer(8) :: values_int8
- real(4) :: values_real4
- real(8) :: values_real8
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- integer(4) :: hdf5_values_int4
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! read numerical attribute:
- select case ( hdf4_xtype )
- case ( DFNT_INT8 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int1 )
- values = int(values_int1,kind=4)
- case ( DFNT_INT16 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int2 )
- values = int(values_int2,kind=4)
- case ( DFNT_INT32 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int4 )
- values = int(values_int4,kind=4)
- case ( DFNT_INT64 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int8 )
- values = int(values_int8,kind=4)
- case ( DFNT_FLOAT32 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real4 )
- values = int(values_real4,kind=4)
- case ( DFNT_FLOAT64 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real8 )
- values = int(values_real8,kind=4)
- case default
- write (gol,'("not implemented for hdf4 data type ",i6)') hdf4_xtype
- TRACEBACK; status=1; return
- end select
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_INTEGER, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! read into integer(4), since no specific routines for kinds 1 and 2 seem available::
- call H5ARead_f( hdf5_attr_id, H5T_NATIVE_INTEGER, hdf5_values_int4, int((/1/),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! convert:
- values = int(hdf5_values_int4,4)
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_i4_0d
-
-
-
-
-
- subroutine MDF_Put_Att_i4_1d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(4), intent(in) :: values(:)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_i4_1d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! strore numerical attribute:
- status = sfSNAtt( hdf4_id, trim(name), DFNT_INT32, size(values), values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_INTEGER, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SIMPLE_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! set extent of the data space:
- call H5SSet_Extent_Simple_f( hdf5_space_id, 1, int(shape(values),kind=HSIZE_T), int(shape(values),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, H5T_NATIVE_INTEGER, int(values), int(shape(values),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_i4_1d
-
-
- ! ***
- subroutine MDF_Get_Att_i4_1d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer(4), intent(out) :: values(:)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_i4_1d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- integer(4), allocatable :: hdf5_values_int4(:)
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! read numerical attribute:
- select case ( hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int1 )
- values = int(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int2 )
- values = int(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int4 )
- values = int(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int8 )
- values = int(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real4 )
- values = int(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real8 )
- values = int(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("not implemented for hdf4 data type ",i6)') hdf4_xtype
- TRACEBACK; status=1; return
- end select
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_INTEGER, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! storage:
- allocate( hdf5_values_int4(size(values)) )
-
- ! read into integer(4), since no specific routines for kinds 1 and 2 seem available::
- call H5ARead_f( hdf5_attr_id, H5T_NATIVE_INTEGER, hdf5_values_int4, int(shape(values),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! convert:
- values = int(hdf5_values_int4,4)
-
- ! clear:
- deallocate( hdf5_values_int4 )
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_i4_1d
-
-
-
-
-
- subroutine MDF_Put_Att_r4_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- real(4), intent(in) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_r4_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! store numerical attribute:
- status = sfSNAtt( hdf4_id, trim(name), DFNT_FLOAT32, 1, values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_REAL, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SCALAR_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, H5T_NATIVE_REAL, values, int((/1/),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_r4_0d
-
-
- ! ***
- subroutine MDF_Get_Att_r4_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- real(4), intent(out) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_r4_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- integer(1) :: values_int1
- integer(2) :: values_int2
- integer(4) :: values_int4
- integer(8) :: values_int8
- real(4) :: values_real4
- real(8) :: values_real8
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! read numerical attribute:
- select case ( hdf4_xtype )
- case ( DFNT_INT8 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int1 )
- values = real(values_int1,kind=4)
- case ( DFNT_INT16 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int2 )
- values = real(values_int2,kind=4)
- case ( DFNT_INT32 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int4 )
- values = real(values_int4,kind=4)
- case ( DFNT_INT64 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int8 )
- values = real(values_int8,kind=4)
- case ( DFNT_FLOAT32 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real4 )
- values = real(values_real4,kind=4)
- case ( DFNT_FLOAT64 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real8 )
- values = real(values_real8,kind=4)
- case default
- write (gol,'("not implemented for hdf4 data type ",i6)') hdf4_xtype
- TRACEBACK; status=1; return
- end select
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_REAL, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! read:
- call H5ARead_f( hdf5_attr_id, hdf5_type_id, values, int((/1/),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_r4_0d
-
-
-
-
-
- subroutine MDF_Put_Att_r4_1d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- real(4), intent(in) :: values(:)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_r4_1d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! strore numerical attribute:
- status = sfSNAtt( hdf4_id, trim(name), DFNT_FLOAT32, size(values), values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_REAL, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SIMPLE_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! set extent of the data space:
- call H5SSet_Extent_Simple_f( hdf5_space_id, 1, int(shape(values),kind=HSIZE_T), int(shape(values),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, H5T_NATIVE_REAL, values, int(shape(values),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_r4_1d
-
-
- ! ***
- subroutine MDF_Get_Att_r4_1d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- real(4), intent(out) :: values(:)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_r4_1d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! read numerical attribute:
- select case ( hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int1 )
- values = real(values_int1,kind=4)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int2 )
- values = real(values_int2,kind=4)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int4 )
- values = real(values_int4,kind=4)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int8 )
- values = real(values_int8,kind=4)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real4 )
- values = real(values_real4,kind=4)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real8 )
- values = real(values_real8,kind=4)
- deallocate( values_real8 )
- case default
- write (gol,'("not implemented for hdf4 data type ",i6)') hdf4_xtype
- TRACEBACK; status=1; return
- end select
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_REAL, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! read:
- call H5ARead_f( hdf5_attr_id, hdf5_type_id, values, int(shape(values),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_r4_1d
-
-
-
-
-
- subroutine MDF_Put_Att_r8_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- real(8), intent(in) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_r8_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! store numerical attribute:
- status = sfSNAtt( hdf4_id, trim(name), DFNT_FLOAT64, 1, values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_DOUBLE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SCALAR_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, H5T_NATIVE_DOUBLE, values, int((/1/),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_r8_0d
-
-
- ! ***
- subroutine MDF_Get_Att_r8_0d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- real(8), intent(out) :: values
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_r8_0d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- integer(1) :: values_int1
- integer(2) :: values_int2
- integer(4) :: values_int4
- integer(8) :: values_int8
- real(4) :: values_real4
- real(8) :: values_real8
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! read numerical attribute:
- select case ( hdf4_xtype )
- case ( DFNT_INT8 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int1 )
- values = real(values_int1,kind=8)
- case ( DFNT_INT16 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int2 )
- values = real(values_int2,kind=8)
- case ( DFNT_INT32 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int4 )
- values = real(values_int4,kind=8)
- case ( DFNT_INT64 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int8 )
- values = real(values_int8,kind=8)
- case ( DFNT_FLOAT32 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real4 )
- values = real(values_real4,kind=8)
- case ( DFNT_FLOAT64 )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real8 )
- values = real(values_real8,kind=8)
- case default
- write (gol,'("not implemented for hdf4 data type ",i6)') hdf4_xtype
- TRACEBACK; status=1; return
- end select
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_DOUBLE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! read:
- call H5ARead_f( hdf5_attr_id, hdf5_type_id, values, int((/1/),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_r8_0d
-
-
-
-
-
- subroutine MDF_Put_Att_r8_1d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HID_T, HSIZE_T
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- use HDF5, only : H5SCreate_f, H5SClose_f, H5SSet_Extent_Simple_f
- use HDF5, only : H5S_SCALAR_F, H5S_SIMPLE_F
- use HDF5, only : H5ACreate_f, H5AClose_f, H5AWrite_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Put_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- real(8), intent(in) :: values(:)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Put_Att_r8_1d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfSCAtt
- integer(hdf4_wpi), external :: sfSNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: iftype
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_space_id
- integer(HID_T) :: hdf5_type_id
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! increase counter:
- filep%natt = filep%natt + 1
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! increase counter:
- varp%natt = varp%natt + 1
- end if
-
- ! loop over file types:
- do iftype = 1, filep%nftype
- ! current type:
- ftype = filep%ftypes(iftype)
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
-
- ! strore numerical attribute:
- status = sfSNAtt( hdf4_id, trim(name), DFNT_FLOAT64, size(values), values )
- if ( status /= SUCCEED ) then
- write (*,'("writing attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
-
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf5_loc_id = filep%hdf5_file_id
- else
- hdf5_loc_id = varp%hdf5_dataset_id
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_DOUBLE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! data space:
- call H5SCreate_f( H5S_SIMPLE_F, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! set extent of the data space:
- call H5SSet_Extent_Simple_f( hdf5_space_id, 1, int(shape(values),kind=HSIZE_T), int(shape(values),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! create attribute; type in file is same as type provided to this routine:
- call H5ACreate_f( hdf5_loc_id, trim(name), hdf5_type_id, hdf5_space_id, hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! write attribute values:
- call H5AWrite_f( hdf5_attr_id, H5T_NATIVE_DOUBLE, values, int(shape(values),kind=HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
- ! release attribute:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data space:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release data type:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! write attribute:
- status = NF90_Put_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end do ! file types
-
- ! ok
- status = 0
-
- end subroutine MDF_Put_Att_r8_1d
-
-
- ! ***
- subroutine MDF_Get_Att_r8_1d( hid, varid, name, values, status )
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f, H5ARead_f
- use HDF5, only : H5TCopy_f, H5TSet_Size_f, H5TClose_f
- use HDF5, only : H5T_NATIVE_CHARACTER
- use HDF5, only : H5T_STD_I8LE, H5T_STD_I16LE, H5T_NATIVE_INTEGER, H5T_STD_I64LE
- use HDF5, only : H5T_NATIVE_REAL, H5T_NATIVE_DOUBLE
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Get_Att, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- real(8), intent(out) :: values(:)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Att_r8_1d'
-
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- integer(hdf4_wpi), external :: sfRCAtt
- integer(hdf4_wpi), external :: sfRNAtt
- #endif
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- integer :: ftype
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_iatt
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- integer :: hdf4_length
-
- integer(1), allocatable :: values_int1(:)
- integer(2), allocatable :: values_int2(:)
- integer(4), allocatable :: values_int4(:)
- integer(8), allocatable :: values_int8(:)
- real(4), allocatable :: values_real4(:)
- real(8), allocatable :: values_real8(:)
-
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
-
- #endif
- #ifdef with_netcdf
- integer :: netcdf_varid
- #endif
- ! --- begin --------------------------------------
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! pointer to variable structure if possible:
- if ( varid /= MDF_GLOBAL ) then
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! select appropriate routine for each type:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- hdf4_id = filep%hdf4_id
- else
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute index given name:
- hdf4_iatt = sfFAttr( hdf4_id , trim(name) )
- if ( hdf4_iatt == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
- ! get type and length:
- status = sfGAInfo( hdf4_id, hdf4_iatt, hdf4_name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info")') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! read numerical attribute:
- select case ( hdf4_xtype )
- case ( DFNT_INT8 )
- allocate( values_int1(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int1 )
- values = real(values_int1,kind=8)
- deallocate( values_int1 )
- case ( DFNT_INT16 )
- allocate( values_int2(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int2 )
- values = real(values_int2,kind=8)
- deallocate( values_int2 )
- case ( DFNT_INT32 )
- allocate( values_int4(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int4 )
- values = real(values_int4,kind=8)
- deallocate( values_int4 )
- case ( DFNT_INT64 )
- allocate( values_int8(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_int8 )
- values = real(values_int8,kind=8)
- deallocate( values_int8 )
- case ( DFNT_FLOAT32 )
- allocate( values_real4(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real4 )
- values = real(values_real4,kind=8)
- deallocate( values_real4 )
- case ( DFNT_FLOAT64 )
- allocate( values_real8(hdf4_length) )
- status = sfRNAtt( hdf4_id, hdf4_iatt, values_real8 )
- values = real(values_real8,kind=8)
- deallocate( values_real8 )
- case default
- write (gol,'("not implemented for hdf4 data type ",i6)') hdf4_xtype
- TRACEBACK; status=1; return
- end select
- if ( status /= SUCCEED ) then
- write (*,'("reading attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- end if
-
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! file id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! data type:
- call H5TCopy_f( H5T_NATIVE_DOUBLE, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! read:
- call H5ARead_f( hdf5_attr_id, hdf5_type_id, values, int(shape(values),HSIZE_T), status )
- IF_NOT_OK_RETURN(status=1)
-
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
-
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! set variable id:
- if ( varid == MDF_GLOBAL ) then
- netcdf_varid = NF90_GLOBAL
- else
- netcdf_varid = varp%netcdf_varid
- end if
- ! read attribute:
- status = NF90_Get_Att( filep%netcdf_id, netcdf_varid, trim(name), values )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Get_Att_r8_1d
-
-
-
-
- ! ********************************************************************
- ! ***
- ! *** inquire
- ! ***
- ! ********************************************************************
- subroutine MDF_Get_Type( hid, ftype, status )
-
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(out) :: ftype
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Get_Type'
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- integer :: iftype
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! check ...
- if ( filep%nftype /= 1 ) then
- write (gol,'("mdf file not defined for single type but for ",i6," ...")') filep%nftype; call goErr
- do iftype = 1, filep%nftype
- select case ( filep%ftypes(iftype) )
- #ifdef with_hdf4
- case ( MDF_HDF4 )
- write (gol,'(" hdf4 file : ",a)') trim(filep%hdf4_fname); call goErr
- #endif
- #ifdef with_netcdf
- case ( MDF_NETCDF, MDF_NETCDF4 )
- write (gol,'(" netcdf file : ",a)') trim(filep%netcdf_fname); call goErr
- #endif
- case default
- write (gol,'(" (unsupported type)")'); call goErr
- end select
- end do
- TRACEBACK; status=1; return
- end if
-
- ! return single type:
- ftype = filep%ftypes(1)
-
- ! ok
- status = 0
- end subroutine MDF_Get_Type
-
-
- ! ***
-
-
- subroutine MDF_Inquire( hid, status, &
- nDimensions, nVariables, nAttributes )
-
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(out) :: status
-
- integer, intent(out), optional :: nDimensions
- integer, intent(out), optional :: nVariables
- integer, intent(out), optional :: nAttributes
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Inquire'
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! return number of dimensions ?
- if ( present(nDimensions) ) then
- ! get number of elements in list:
- call MDF_Dim_List_Inquire( filep%Dim_List, status, n=nDimensions )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! return number of variables ?
- if ( present(nVariables) ) then
- ! get number of elements in list:
- call MDF_Var_List_Inquire( filep%Var_List, status, n=nVariables )
- IF_NOT_OK_RETURN(status=1)
- end if
-
- ! return number of global attributes ?
- if ( present(nAttributes) ) then
- ! copy from structure:
- nAttributes = filep%natt
- end if
-
- ! ok
- status = 0
-
- end subroutine MDF_Inquire
-
-
- ! ***
-
-
- subroutine MDF_Inq_DimID( hid, name, dimid, status )
-
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- character(len=*), intent(in) :: name
- integer, intent(out) :: dimid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Inq_DimID'
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- integer :: ndim, idim
- character(len=LEN_NAME) :: dimname
- ! --- begin --------------------------------------
-
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
- ! dummy ...
- dimid = -1
- ! number of variables:
- call MDF_Inquire( hid, status, ndimensions=ndim )
- IF_NOT_OK_RETURN(status=1)
- ! list variables ?
- if ( ndim > 0 ) then
- ! loop over variables:
- do idim = 1, ndim
- ! get name:
- call MDF_Inquire_Dimension( hid, idim, status, name=dimname )
- IF_NOT_OK_RETURN(status=1)
- ! similar ?
- if ( trim(name) == trim(dimname) ) then
- ! store current id:
- dimid = idim
- ! leave:
- exit
- end if
- end do ! variables
- end if
-
- ! check ...
- if ( dimid < 0 ) then
- write (gol,'("no dimension `",a,"` found in file : ",a)') trim(name), trim(filep%filename); call goErr
- TRACEBACK; status=1; return
- end if
-
- ! ok
- status = 0
-
- end subroutine MDF_Inq_DimID
- ! ***
-
-
- subroutine MDF_Inquire_Dimension( hid, dimid, status, name, length, unlimited, named )
-
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: dimid
- integer, intent(out) :: status
-
- character(len=*), intent(out), optional :: name
- integer, intent(out), optional :: length
- logical, intent(out), optional :: unlimited
- logical, intent(out), optional :: named
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Inquire_Dimension'
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- type(MDF_Dim), pointer :: dimp
- ! --- begin --------------------------------------
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to dimension structure:
- call MDF_Dim_List_Get_Pointer( filep%Dim_List, dimid, dimp, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! return value ?
- if ( present(name ) ) name = trim(dimp%name)
- if ( present(length ) ) length = dimp%length
- if ( present(unlimited) ) unlimited = dimp%unlimited
- if ( present(named ) ) named = dimp%named
-
- ! ok
- status = 0
-
- end subroutine MDF_Inquire_Dimension
-
-
- ! ***
-
-
- subroutine MDF_Inq_VarID( hid, name, varid, status )
-
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- character(len=*), intent(in) :: name
- integer, intent(out) :: varid
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Inq_VarID'
-
- ! --- local --------------------------------------
- type(MDF_File), pointer :: filep
- integer :: nvar, ivar
- character(len=LEN_NAME) :: varname
- ! --- begin --------------------------------------
-
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
- ! dummy ...
- varid = -1
- ! number of variables:
- call MDF_Inquire( hid, status, nVariables=nvar )
- IF_NOT_OK_RETURN(status=1)
- ! list variables ?
- if ( nvar > 0 ) then
- ! loop over variables:
- do ivar = 1, nvar
- ! get name:
- call MDF_Inquire_Variable( hid, ivar, status, name=varname )
- IF_NOT_OK_RETURN(status=1)
- ! similar ?
- if ( trim(name) == trim(varname) ) then
- ! store current id:
- varid = ivar
- ! leave:
- exit
- end if
- end do ! variables
- end if
-
- ! check ...
- if ( varid < 0 ) then
- write (gol,'("no variable `",a,"` found in file : ",a)') trim(name), trim(filep%filename); call goErr
- TRACEBACK; status=varid; return
- end if
-
- ! ok
- status = 0
-
- end subroutine MDF_Inq_VarID
-
-
- ! ***
-
-
- subroutine MDF_Inquire_Variable( hid, varid, status, &
- name, xtype, ndims, dimids, natts, &
- shp )
-
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer, intent(out) :: status
-
- character(len=*), intent(out), optional :: name
- integer, intent(out), optional :: xtype
- integer, intent(out), optional :: ndims
- integer, intent(out), optional :: dimids(:)
- integer, intent(out), optional :: natts
- integer, intent(out), optional :: shp(:)
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Inquire_Variable'
-
- ! --- local --------------------------------------
- integer :: ftype
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- ! --- begin --------------------------------------
-
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! return value ?
- if ( present(name ) ) name = trim(varp%name)
- if ( present(xtype ) ) xtype = varp%xtype
- if ( present(ndims ) ) ndims = varp%ndim
- if ( present(dimids ) ) then
- if ( size(dimids) /= varp%ndim ) then
- write (gol,'("size of dimension id array (",i6,") should equal number of dimensions (",i6,")")') size(dimids), varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- dimids = varp%dimids(1:varp%ndim)
- end if
- if ( present(natts) ) then
- natts = varp%natt
- end if
-
- ! special:
- if ( present(shp) ) then
- if ( size(shp) /= varp%ndim ) then
- write (gol,'("size of shape array (",i6,") should equal number of dimensions (",i6,")")') size(shp), varp%ndim; call goErr
- TRACEBACK; status=1; return
- end if
- shp = varp%shp(1:varp%ndim)
- end if
-
- ! ok
- status = 0
-
- end subroutine MDF_Inquire_Variable
-
-
- ! ***
-
-
- subroutine MDF_Inquire_Attribute( hid, varid, name, status, xtype, length )
-
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AOpen_By_Name_f, H5AClose_f
- use HDF5, only : H5AGet_Type_f
- use HDF5, only : H5TGet_Native_Type_f, H5TClose_f
- use HDF5, only : H5T_DIR_ASCEND_F
- use HDF5, only : H5AGet_Space_f
- use HDF5, only : H5SGet_Simple_Extent_Dims_f, H5SClose_f
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Inquire_Attribute
- use NetCDF, only : NF90_GLOBAL
- use NetCDF, only : NF90_CHAR, NF90_BYTE, NF90_SHORT, NF90_INT, NF90_FLOAT, NF90_DOUBLE
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- character(len=*), intent(in) :: name
- integer, intent(out) :: status
-
- integer, intent(out), optional :: xtype
- integer, intent(out), optional :: length
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Inquire_Attribute'
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfFAttr
- integer(hdf4_wpi), external :: sfGAInfo
- #endif
-
- ! --- local --------------------------------------
- integer :: ftype
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- #ifdef with_hdf4
- integer :: hdf4_id
- integer :: hdf4_attind
- character(len=LEN_NAME) :: hdf4_name
- integer :: hdf4_xtype
- #endif
- #ifdef with_hdf5_beta
- integer(HID_T) :: hdf5_loc_id
- character(len=LEN_NAME) :: hdf5_obj_name
- integer(HID_T) :: hdf5_attr_id
- integer(HID_T) :: hdf5_type_id
- integer(HID_T) :: hdf5_space_id
- integer(HSIZE_T) :: hdf5_dims(MAX_RANK)
- integer(HSIZE_T) :: hdf5_maxdims(MAX_RANK)
- integer :: hdf5_rank
- #endif
- #ifdef with_netcdf
- integer :: netcdf_id
- #endif
- ! --- begin --------------------------------------
-
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! select appropriate routine:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf4_id = filep%hdf4_id
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! variable id:
- hdf4_id = varp%hdf4_sdid
- end if
- ! get attribute number given name:
- hdf4_attind = sfFAttr( hdf4_id, trim(name) )
- if ( hdf4_attind == FAIL ) then
- write (gol,'("finding attribute `",a,"`")') trim(name); call goErr
- TRACEBACK; status=1; return
- status=-1; return
- end if
- ! extract info:
- status = sfGAInfo( hdf4_id, hdf4_attind, hdf4_name, hdf4_xtype, length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info:")'); call goErr
- write (gol,'(" hdf4 file : ",a)') trim(filep%hdf4_fname); call goErr
- if ( varid /= MDF_GLOBAL ) then
- write (gol,'(" variable name : ",a)') trim(varp%name); call goErr
- end if
- write (gol,'(" hdf4 attribute index : ",i6)') hdf4_attind; call goErr
- TRACEBACK; status=1; return
- end if
- ! return type ?
- if ( present(xtype) ) then
- ! convert:
- select case ( hdf4_xtype )
- case ( DFNT_CHAR ) ; xtype = MDF_CHAR
- case ( DFNT_INT8 ) ; xtype = MDF_BYTE
- case ( DFNT_INT16 ) ; xtype = MDF_SHORT
- case ( DFNT_INT32 ) ; xtype = MDF_INT
- case ( DFNT_FLOAT32 ) ; xtype = MDF_FLOAT
- case ( DFNT_FLOAT64 ) ; xtype = MDF_DOUBLE
- case default
- write (gol,'("unsupported data type : ",i6)') hdf4_xtype; call goErr
- TRACEBACK; status=1; return
- end select
- end if
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- hdf5_loc_id = filep%hdf5_file_id
- hdf5_obj_name = '.'
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! dataset id:
- hdf5_loc_id = varp%hdf5_dataset_id
- hdf5_obj_name = '.'
- end if
- ! open attribute:
- call H5AOpen_By_Name_f( hdf5_loc_id, hdf5_obj_name, trim(name), hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! get type ?
- if ( present(xtype) ) then
- ! get data type id:
- call H5AGet_Type_f( hdf5_attr_id, hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! convert to mdf type code:
- call HDF5_Get_MDF_Type( hdf5_type_id, xtype, status )
- IF_NOT_OK_RETURN(status=1)
- ! release:
- call H5TClose_f( hdf5_type_id, status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! return length ?
- if ( present(length) ) then
- ! get data space id:
- call H5AGet_Space_f( hdf5_attr_id, hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- ! get dimensions:
- call H5SGet_Simple_Extent_Dims_f( hdf5_space_id, hdf5_dims, hdf5_maxdims, status )
- if ( status < 0 ) then
- write (gol,'("could not extract dimensions for attribute : ",a)') trim(name); call goErr
- TRACEBACK; status=1; return
- else
- hdf5_rank = status
- end if
- ! extract length:
- if ( hdf5_rank == 0 ) then
- length = 1 ! scalar
- else if ( hdf5_rank == 1 ) then
- length = hdf5_dims(1) ! 1d array
- else
- write (gol,'("hdf5 attributes not supported for rank ",i6)') hdf5_rank; call goErr
- TRACEBACK; status=1; return
- endif
- ! release:
- call H5SClose_f( hdf5_space_id, status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! release:
- call H5AClose_f( hdf5_attr_id, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! global or variable attribute ?
- if ( varid == MDF_GLOBAL ) then
- ! file id:
- netcdf_id = NF90_GLOBAL
- else
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
- ! variable id:
- netcdf_id = varp%netcdf_varid
- end if
- ! get type etc:
- status = NF90_Inquire_Attribute( filep%netcdf_id, netcdf_id, trim(name), &
- xtype=xtype, len=length )
- IF_NF90_NOT_OK_RETURN(status=1)
- ! return type ?
- if ( present(xtype) ) then
- ! convert:
- select case ( xtype )
- case ( NF90_CHAR ) ; xtype = MDF_CHAR
- case ( NF90_BYTE ) ; xtype = MDF_BYTE
- case ( NF90_SHORT ) ; xtype = MDF_SHORT
- case ( NF90_INT ) ; xtype = MDF_INT
- case ( NF90_FLOAT ) ; xtype = MDF_FLOAT
- case ( NF90_DOUBLE ) ; xtype = MDF_DOUBLE
- case default
- write (gol,'("unsupported data type : ",i6)') xtype; call goErr
- TRACEBACK; status=1; return
- end select
- end if
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- ! ok
- status = 0
-
- end subroutine MDF_Inquire_Attribute
-
-
- ! ***
-
-
- subroutine MDF_Inq_AttName( hid, varid, attnum, name, status )
-
- #ifdef with_hdf5_beta
- use HDF5, only : HSIZE_T
- use HDF5, only : H5AGet_Name_By_Idx_f
- use HDF5, only : H5_INDEX_CRT_ORDER_F, H5_ITER_NATIVE_F
- #endif
- #ifdef with_netcdf
- use NetCDF, only : NF90_Inq_AttName, NF90_GLOBAL
- #endif
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: varid
- integer, intent(in) :: attnum ! 1,..,natt
- character(len=*), intent(out) :: name
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Inq_AttName'
-
- ! --- external -------------------------------
- #ifdef with_hdf4
- integer(hdf4_wpi), external :: sfGAInfo
- #endif
-
- ! --- local --------------------------------------
- integer :: ftype
- type(MDF_File), pointer :: filep
- type(MDF_Var), pointer :: varp
- #ifdef with_hdf4
- integer :: hdf4_xtype
- integer :: hdf4_length
- #endif
- #ifdef with_hdf5_beta
- integer(HSIZE_T) :: hdf5_idx
- #endif
- ! --- begin --------------------------------------
-
- ! single type:
- call MDF_Get_Type( hid, ftype, status )
- IF_NOT_OK_RETURN(status=1)
- ! pointer to file structure:
- call MDF_File_List_Get_Pointer( File_List, hid, filep, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! global attribute ?
- if ( varid == MDF_GLOBAL ) then
-
- ! select appropriate routine:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! extract info:
- status = sfGAInfo( filep%hdf4_id, attnum-1, name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info:")'); call goErr
- write (gol,'(" hdf4 file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" attribute number : ",i6)') attnum; call goErr
- TRACEBACK; status=1; return
- end if
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! open attribute:
- call H5AGet_Name_By_Idx_f( filep%hdf5_file_id, '.', &
- H5_INDEX_CRT_ORDER_F, H5_ITER_NATIVE_F, int(attnum-1,HSIZE_T), &
- name, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! get name:
- status = NF90_Inq_AttName( filep%netcdf_id, NF90_GLOBAL, attnum, name )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
-
- else ! variable attribute
- ! pointer to variable structure:
- call MDF_Var_List_Get_Pointer( filep%Var_List, varid, varp, status )
- IF_NOT_OK_RETURN(status=1)
-
- ! select appropriate routine:
- select case ( ftype )
- #ifdef with_hdf4
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! extract info:
- status = sfGAInfo( varp%hdf4_sdid, attnum-1, name, hdf4_xtype, hdf4_length )
- if ( status /= SUCCEED ) then
- write (gol,'("getting attribute info:")'); call goErr
- write (gol,'(" hdf4 file : ",a)') trim(filep%hdf4_fname); call goErr
- write (gol,'(" variable name : ",a)') trim(varp%name); call goErr
- write (gol,'(" attribute number : ",i6)') attnum; call goErr
- TRACEBACK; status=1; return
- end if
- #endif
- #ifdef with_hdf5_beta
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_HDF5 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! index number:
- hdf5_idx = attnum-1
- ! open attribute:
- call H5AGet_Name_By_Idx_f( varp%hdf5_dataset_id, '.', &
- H5_INDEX_CRT_ORDER_F, H5_ITER_NATIVE_F, hdf5_idx, &
- name, status )
- IF_NOT_OK_RETURN(status=1)
- #endif
- #ifdef with_netcdf
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case ( MDF_NETCDF, MDF_NETCDF4 )
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- ! get name:
- status = NF90_Inq_AttName( filep%netcdf_id, varp%netcdf_varid, attnum, name )
- IF_NF90_NOT_OK_RETURN(status=1)
- #endif
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- case default
- ! ~~~~~~~~~~~~~~~~~~~~~~~~~~
- write (gol,'("unsupported filetype : ",i6)') ftype; call goErr
- write (gol,'(" filetype name : ",a)') trim(MDF_FILETYPE_NAME(ftype)); call goErr
- write (gol,'(" compiled without macro `with_*` defined ?")'); call goErr
- TRACEBACK; status=1; return
- end select
- end if ! global or variable attribute
-
- ! ok
- status = 0
-
- end subroutine MDF_Inq_AttName
- ! ********************************************************************
- ! ***
- ! *** show content
- ! ***
- ! ********************************************************************
-
- subroutine MDF_Show( filename, status, filetype, show_data )
- ! --- in/out -------------------------------------
- character(len=*), intent(in) :: filename
- integer, intent(out) :: status
- integer, intent(in), optional :: filetype
- logical, intent(in), optional :: show_data
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Show'
-
- ! --- local --------------------------------------
-
- integer :: l
- integer :: ftype
- logical :: do_show_data
- integer :: hid
- integer :: ndim, idim
- integer :: nvar, ivar
- integer :: natt
- logical :: named
- character(len=LEN_NAME) :: ftype_name
- character(len=LEN_NAME) :: name
- integer :: length
- logical :: unlimited
- logical :: isfirst
- integer :: xtype
- integer :: dimids(MAX_RANK)
- integer :: shp(MAX_RANK)
- character(len=LEN_LINE) :: line
- character(len=LEN_NAME) :: val
- ! --- begin --------------------------------------
-
- ! show data ?
- do_show_data = .false.
- if ( present(show_data) ) do_show_data = show_data
- ! guess file type by default, or set to optional argument:
- ftype = MDF_NONE
- if ( present(filetype) ) ftype = filetype
-
- ! guess file type ?
- if ( ftype == MDF_NONE ) then
- ! length of filename:
- l = len_trim(filename)
- ! guess ...
- if ( (l > 3) .and. (filename(l-2:l) == '.nc') ) then
- ftype = MDF_NETCDF
- else if ( (l > 3) .and. (filename(l-2:l) == '.h5') ) then
- ftype = MDF_HDF5
- else if ( (l > 4) .and. (filename(l-3:l) == '.hdf') ) then
- ftype = MDF_HDF4
- else
- write (gol,'("could not guess file type from file name:")'); call goErr
- write (gol,'(" ",a)') trim(filename); call goErr
- TRACEBACK; status=1; return
- end if
- end if
-
- ! filetype name:
- ftype_name = trim(MDF_FILETYPE_NAME(ftype))
- #ifdef with_netcdf
- if ( ftype == MDF_NETCDF ) then
- call NetCDF_Get_FileType( trim(filename), ftype_name, status )
- IF_NOT_OK_RETURN(status=1)
- end if
- #endif
- ! open file:
- call MDF_Open( trim(filename), ftype, MDF_READ, hid, status )
- IF_NOT_OK_RETURN(status=1)
- ! header line:
- ! <filetype> <filename> {
- write (gol,'(a," ",a," {")') trim(ftype_name), trim(filename); call goPr
-
- ! number of dimensions:
- call MDF_Inquire( hid, status, nDimensions=ndim )
- IF_NOT_OK_RETURN(status=1)
- ! list dimensions ?
- if ( ndim > 0 ) then
- ! init flag:
- isfirst = .true.
- ! loop over dimensions:
- do idim = 1, ndim
- ! write lines:
- ! x = 4 ;
- ! t = UNLIMITED ; // (5 currently)
- ! ...
- ! get name and length:
- call MDF_Inquire_Dimension( hid, idim, status, name=name, named=named, &
- length=length, unlimited=unlimited )
- IF_NOT_OK_RETURN(status=1)
- ! skip ?
- if ( .not. named ) cycle
- ! display header ?
- if ( isfirst ) then
- write (gol,'("dimensions:")'); call goPr
- isfirst = .false.
- end if
- ! display:
- if ( unlimited ) then
- write (val,*) length
- val = adjustl(val)
- write (gol,'(" ",a," = UNLIMITED ; // (",a," currently)")') trim(name), trim(val); call goPr
- else if ( named ) then
- write (gol,'(" ",a," = ",i6," ;")') trim(name), length; call goPr
- end if
- end do ! dimensions
- end if ! ndim > 0
-
- ! number of variables:
- call MDF_Inquire( hid, status, nVariables=nvar )
- IF_NOT_OK_RETURN(status=1)
- ! list variables ?
- if ( nvar > 0 ) then
- ! start:
- write (gol,'("variables:")'); call goPr
- ! loop over variables:
- do ivar = 1, nvar
- ! write lines:
- ! float afield(y, x) ;
- ! afield:unit = "m" ;
- ! ...
- ! get name etc:
- call MDF_Inquire_Variable( hid, ivar, status, name=name, xtype=xtype, ndims=ndim, natts=natt )
- IF_NOT_OK_RETURN(status=1)
- ! get dimension id's now the number is known:
- call MDF_Inquire_Variable( hid, ivar, status, dimids=dimids(1:ndim) )
- IF_NOT_OK_RETURN(status=1)
- ! start line with type and variable name:
- write (line,'(" ",a," ",a,"(")') trim(MDF_DATATYPE_NAME(xtype)), trim(name)
- ! loop over dimensions:
- shp = 1
- do idim = 1, ndim
- ! get dimension name:
- call MDF_Inquire_Dimension( hid, dimids(idim), status, name=name, named=named, &
- length=length, unlimited=unlimited )
- IF_NOT_OK_RETURN(status=1)
- ! add to line:
- if ( idim > 1 ) line = trim(line)//','
- ! name or number ...
- if ( named ) then
- line = trim(line)//' '//trim(name)
- else
- write (val,*) length
- line = trim(line)//' '//adjustl(val)
- if (unlimited) line = trim(line)//'/Inf'
- end if
- ! store for show_data:
- shp(idim) = length
- end do
- ! close line:
- line = trim(line)//' ) ;'
- ! display dimension name(dims) line:
- write (gol,'(a)') trim(line); call goPr
- ! write attributes:
- call MDF_Show_Attributes( hid, ivar, natt, status )
- IF_NOT_OK_RETURN(status=1)
- ! show data ?
- if ( do_show_data ) then
- ! display data:
- call MDF_Show_Data( hid, ivar, xtype, ndim, shp, status )
- IF_NOT_OK_RETURN(status=1)
- end if
- end do ! variables
- end if ! nvar > 0
-
- ! number of global attributes:
- call MDF_Inquire( hid, status, nAttributes=natt )
- IF_NOT_OK_RETURN(status=1)
- ! global attributes ?
- if ( natt > 0 ) then
- ! intro:
- write (gol,'("")'); call goPr
- write (gol,'("// global attributes:")'); call goPr
- ! display attributes:
- call MDF_Show_Attributes( hid, MDF_GLOBAL, natt, status )
- IF_NOT_OK_RETURN(status=1)
- end if
- ! closure:
- ! }
- write (gol,'("}")'); call goPr
- ! close file:
- call MDF_Close( hid, status )
- IF_NOT_OK_RETURN(status=1)
- ! ok
- status = 0
-
- end subroutine MDF_Show
-
-
- ! ***
-
-
- subroutine MDF_Show_Attributes( hid, ivar, natt, status )
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: ivar
- integer, intent(in) :: natt
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Show_Attributes'
-
- ! --- local --------------------------------------
-
- integer :: l
- integer :: iatt
- character(len=LEN_NAME) :: name
- integer :: length
- integer :: xtype
- character(len=LEN_LINE) :: line
- character(len=LEN_NAME) :: val
- integer :: ival
- integer(4), allocatable :: values_i4(:)
- real(8), allocatable :: values_r8(:)
- ! --- begin --------------------------------------
-
- ! loop over attributes:
- do iatt = 1, natt
- ! get name:
- call MDF_Inq_AttName( hid, ivar, iatt, name, status )
- IF_NOT_OK_RETURN(status=1)
- ! get type and length:
- call MDF_Inquire_Attribute( hid, ivar, name, status, xtype=xtype, length=length )
- IF_NOT_OK_RETURN(status=1)
- !! info ...
- !write (gol,'(" ",a," <",a,"> ",i4," ;")') trim(name), trim(MDF_DATATYPE_NAME(xtype)), length; call goPr
- ! different per type ...
- select case ( xtype )
- !character values
- case ( MDF_CHAR )
- ! get value:
- call MDF_Get_Att( hid, ivar, name, line, status )
- if (status/=0) then
- ! somthing went wrong (attribute too large ?)
- line = '...'
- else
- ! ok; but not too much to the screen ...
- if ( len_trim(line) > 400 ) line = line(1:400)//'...'
- end if
- ! display ..
- ! variable rank etc:
- write (gol,'(" ",a," = """,a,""" ;")') trim(name), trim(line); call goPr
- !integer values
- case ( MDF_BYTE, MDF_SHORT, MDF_INT )
- ! storage:
- allocate( values_i4(length) )
- ! fill:
- call MDF_Get_Att( hid, ivar, name, values_i4, status )
- if (status/=0) then
- ! somthing went wrong (attribute too large ?)
- line = '...'
- else
- ! loop over values:
- line = ''
- do ival = 1, min(length,50)
- ! add seperation if necessary:
- if ( ival > 1 ) line = trim(line)//','
- ! dump value:
- write (val,*) values_i4(ival)
- ! shift to left:
- val = adjustl(val)
- ! add to line:
- line = trim(line)//' '//trim(val)
- ! add type indicator if necessary:
- if ( xtype == MDF_BYTE ) line = trim(line)//'b'
- if ( xtype == MDF_SHORT ) line = trim(line)//'s'
- end do
- if ( ival < length ) line=trim(line)//' ...'
- end if
- ! display:
- write (gol,'(" ",a," =",a)') trim(name), trim(line); call goPr
- ! clear:
- deallocate( values_i4 )
- !floating point values
- case ( MDF_FLOAT, MDF_DOUBLE )
- ! storage:
- allocate( values_r8(length) )
- ! fill:
- call MDF_Get_Att( hid, ivar, name, values_r8, status )
- if (status/=0) then
- ! somthing went wrong (attribute too large ?)
- line = '...'
- else
- ! loop over values:
- line = ''
- do ival = 1, min(length,50)
- ! add seperation if necessary:
- if ( ival > 1 ) line = trim(line)//','
- ! dump value:
- write (val,*) values_r8(ival)
- ! remove tailing zeros:
- do l = len_trim(val), 1, -1
- if ( val(l:l) /= '0' ) exit
- val(l:l) = ' '
- end do
- ! shift to left:
- val = adjustl(val)
- ! add to line:
- line = trim(line)//' '//trim(val)
- ! add type indicator if necessary:
- if ( xtype == MDF_FLOAT ) line = trim(line)//'f'
- end do
- if ( ival < length ) line=trim(line)//' ...'
- end if
- ! display:
- write (gol,'(" ",a," =",a)') trim(name), trim(line); call goPr
- ! clear:
- deallocate( values_r8 )
- !other ...
- case default
- write (gol,'("INTERNAL - unsupported data type : ",i6)') xtype; call goErr
- TRACEBACK; status=1; return
- end select
- end do
-
- ! ok
- status = 0
-
- end subroutine MDF_Show_Attributes
-
-
- ! ***
-
-
- subroutine MDF_Show_Data( hid, ivar, xtype, rank, shp, status )
- ! --- in/out -------------------------------------
- integer, intent(in) :: hid
- integer, intent(in) :: ivar
- integer, intent(in) :: xtype
- integer, intent(in) :: rank
- integer, intent(in) :: shp(MAX_RANK)
- integer, intent(out) :: status
- ! --- const --------------------------------------
- character(len=*), parameter :: rname = mname//'/MDF_Show_Data'
-
- ! --- local --------------------------------------
-
- character(len=LEN_LINE) :: line
- character(len=LEN_NAME) :: val
- integer :: l
- integer :: i1,i2,i3,i4,i5,i6,i7
- integer(4), allocatable :: values_i4(:,:,:,:,:,:,:)
- real(8), allocatable :: values_r8(:,:,:,:,:,:,:)
- character(len=shp(1)), allocatable :: values_c (:,:,:,:,:,:)
- ! --- begin --------------------------------------
-
- ! per type:
- select case ( xtype )
- ! character values:
- case ( MDF_CHAR )
- ! storage:
- allocate( values_c(shp(2),shp(3),shp(4),shp(5),shp(6),shp(7)), stat=status )
- IF_NOT_OK_RETURN(status=1)
- ! read:
- select case ( rank )
- case ( 1 ) ; call MDF_Get_Var( hid, ivar, values_c(1,1,1,1,1,1), status, count=shp(1:rank) )
- case ( 2 ) ; call MDF_Get_Var( hid, ivar, values_c(:,1,1,1,1,1), status, count=shp(1:rank) )
- case ( 3 ) ; call MDF_Get_Var( hid, ivar, values_c(:,:,1,1,1,1), status, count=shp(1:rank) )
- case ( 4 ) ; call MDF_Get_Var( hid, ivar, values_c(:,:,:,1,1,1), status, count=shp(1:rank) )
- case ( 5 ) ; call MDF_Get_Var( hid, ivar, values_c(:,:,:,:,1,1), status, count=shp(1:rank) )
- case ( 6 ) ; call MDF_Get_Var( hid, ivar, values_c(:,:,:,:,:,1), status, count=shp(1:rank) )
- case ( 7 ) ; call MDF_Get_Var( hid, ivar, values_c(:,:,:,:,:,:), status, count=shp(1:rank) )
- case default
- write (gol,'("INTERNAL - unsupported rank : ",i6)') rank; call goErr
- TRACEBACK; status=1; return
- end select
- IF_NOT_OK_RETURN(status=1)
- ! loop over higher dimensions:
- do i7 = 1, shp(7)
- do i6 = 1, shp(6)
- do i5 = 1, shp(5)
- do i4 = 1, shp(4)
- do i3 = 1, shp(3)
- ! plot index of higer dimensions ?
- if ( rank > 2 ) then
- line = ' (:,:'
- if ( rank >= 3 ) write (line,'(a,",",i4)') trim(line), i3
- if ( rank >= 4 ) write (line,'(a,",",i4)') trim(line), i4
- if ( rank >= 5 ) write (line,'(a,",",i4)') trim(line), i5
- if ( rank >= 6 ) write (line,'(a,",",i4)') trim(line), i6
- if ( rank >= 7 ) write (line,'(a,",",i4)') trim(line), i7
- line = trim(line)//')'
- write (gol,'(a)') trim(line); call goPr
- end if
- ! display matrix:
- do i2 = 1, shp(2)
- ! copy value:
- line = values_c(i2,i3,i4,i5,i6,i7)
- ! display:
- write (gol,'(" `",a,"` ;")') trim(line); call goPr
- end do ! i2
- end do ! i3
- end do ! i4
- end do ! i5
- end do ! i6
- end do ! i7
- ! clear:
- deallocate( values_c, stat=status )
- IF_NOT_OK_RETURN(status=1)
- ! integer values:
- case ( MDF_BYTE, MDF_SHORT, MDF_INT )
- ! storage:
- allocate( values_i4(shp(1),shp(2),shp(3),shp(4),shp(5),shp(6),shp(7)), stat=status )
- IF_NOT_OK_RETURN(status=1)
- ! read:
- select case ( rank )
- case ( 1 ) ; call MDF_Get_Var( hid, ivar, values_i4(:,1,1,1,1,1,1), status )
- case ( 2 ) ; call MDF_Get_Var( hid, ivar, values_i4(:,:,1,1,1,1,1), status )
- case ( 3 ) ; call MDF_Get_Var( hid, ivar, values_i4(:,:,:,1,1,1,1), status )
- case ( 4 ) ; call MDF_Get_Var( hid, ivar, values_i4(:,:,:,:,1,1,1), status )
- case ( 5 ) ; call MDF_Get_Var( hid, ivar, values_i4(:,:,:,:,:,1,1), status )
- case ( 6 ) ; call MDF_Get_Var( hid, ivar, values_i4(:,:,:,:,:,:,1), status )
- case ( 7 ) ; call MDF_Get_Var( hid, ivar, values_i4(:,:,:,:,:,:,:), status )
- case default
- write (gol,'("INTERNAL - unsupported rank : ",i6)') rank; call goErr
- TRACEBACK; status=1; return
- end select
- IF_NOT_OK_RETURN(status=1)
- ! loop over higher dimensions:
- do i7 = 1, shp(7)
- do i6 = 1, shp(6)
- do i5 = 1, shp(5)
- do i4 = 1, shp(4)
- do i3 = 1, shp(3)
- ! plot index of higer dimensions ?
- if ( rank > 2 ) then
- line = ' (:,:'
- if ( rank >= 3 ) write (line,'(a,",",i4)') trim(line), i3
- if ( rank >= 4 ) write (line,'(a,",",i4)') trim(line), i4
- if ( rank >= 5 ) write (line,'(a,",",i4)') trim(line), i5
- if ( rank >= 6 ) write (line,'(a,",",i4)') trim(line), i6
- if ( rank >= 7 ) write (line,'(a,",",i4)') trim(line), i7
- line = trim(line)//')'
- write (gol,'(a)') trim(line); call goPr
- end if
- ! display matrix:
- do i2 = 1, shp(2)
- line = ''
- do i1 = 1, shp(1)
- !! not all ?
- !if ( i1 > 10 ) then
- ! line = trim(line)//' ...'
- ! exit
- !end if
- ! add seperation if necessary:
- if ( i1 > 1 ) line = trim(line)//','
- ! dump value:
- write (val,*) values_i4(i1,i2,i3,i4,i5,i6,i7)
- ! shift to left:
- val = adjustl(val)
- ! add to line:
- line = trim(line)//' '//trim(val)
- ! add type indicator if necessary:
- if ( xtype == MDF_BYTE ) line = trim(line)//'b'
- if ( xtype == MDF_SHORT ) line = trim(line)//'s'
- ! line too long already ?
- if ( len_trim(line) > 72 ) then
- ! display:
- write (gol,'(" ",a," ;")') trim(line); call goPr
- ! empty:
- line = ''
- end if
- end do ! i1
- ! display:
- if ( len_trim(line) > 0 ) then
- write (gol,'(" ",a," ;")') trim(line); call goPr
- end if
- end do ! i2
- end do ! i3
- end do ! i4
- end do ! i5
- end do ! i6
- end do ! i7
- ! clear:
- deallocate( values_i4, stat=status )
- IF_NOT_OK_RETURN(status=1)
- ! real values:
- case ( MDF_FLOAT, MDF_DOUBLE )
- ! storage:
- allocate( values_r8(shp(1),shp(2),shp(3),shp(4),shp(5),shp(6),shp(7)), stat=status )
- IF_NOT_OK_RETURN(status=1)
- ! read:
- select case ( rank )
- case ( 1 ) ; call MDF_Get_Var( hid, ivar, values_r8(:,1,1,1,1,1,1), status )
- case ( 2 ) ; call MDF_Get_Var( hid, ivar, values_r8(:,:,1,1,1,1,1), status )
- case ( 3 ) ; call MDF_Get_Var( hid, ivar, values_r8(:,:,:,1,1,1,1), status )
- case ( 4 ) ; call MDF_Get_Var( hid, ivar, values_r8(:,:,:,:,1,1,1), status )
- case ( 5 ) ; call MDF_Get_Var( hid, ivar, values_r8(:,:,:,:,:,1,1), status )
- case ( 6 ) ; call MDF_Get_Var( hid, ivar, values_r8(:,:,:,:,:,:,1), status )
- case ( 7 ) ; call MDF_Get_Var( hid, ivar, values_r8(:,:,:,:,:,:,:), status )
- case default
- write (gol,'("INTERNAL - unsupported rank : ",i6)') rank; call goErr
- TRACEBACK; status=1; return
- end select
- IF_NOT_OK_RETURN(status=1)
- ! loop over higher dimensions:
- do i7 = 1, shp(7)
- do i6 = 1, shp(6)
- do i5 = 1, shp(5)
- do i4 = 1, shp(4)
- do i3 = 1, shp(3)
- ! plot index of higer dimensions ?
- if ( rank > 2 ) then
- line = ' (:,:'
- if ( rank >= 3 ) write (line,'(a,",",i4)') trim(line), i3
- if ( rank >= 4 ) write (line,'(a,",",i4)') trim(line), i4
- if ( rank >= 5 ) write (line,'(a,",",i4)') trim(line), i5
- if ( rank >= 6 ) write (line,'(a,",",i4)') trim(line), i6
- if ( rank >= 7 ) write (line,'(a,",",i4)') trim(line), i7
- line = trim(line)//')'
- write (gol,'(a)') trim(line); call goPr
- end if
- ! display matrix:
- do i2 = 1, shp(2)
- line = ''
- do i1 = 1, shp(1)
- !! not all ?
- !if ( i1 > 10 ) then
- ! line = trim(line)//' ...'
- ! exit
- !end if
- ! add seperation if necessary:
- if ( i1 > 1 ) line = trim(line)//','
- ! dump value:
- write (val,*) values_r8(i1,i2,i3,i4,i5,i6,i7)
- ! remove tailing zeros:
- do l = len_trim(val), 1, -1
- if ( val(l:l) /= '0' ) exit
- val(l:l) = ' '
- end do
- ! shift to left:
- val = adjustl(val)
- ! add to line:
- line = trim(line)//' '//trim(val)
- ! add type indicator if necessary:
- if ( xtype == MDF_FLOAT ) line = trim(line)//'f'
- ! line too long already ?
- if ( len_trim(line) > 72 ) then
- ! display:
- write (gol,'(" ",a," ;")') trim(line); call goPr
- ! empty:
- line = ''
- end if
- end do ! i1
- ! display:
- if ( len_trim(line) > 0 ) then
- write (gol,'(" ",a," ;")') trim(line); call goPr
- end if
- end do ! i2
- end do ! i3
- end do ! i4
- end do ! i5
- end do ! i6
- end do ! i7
- ! clear:
- deallocate( values_r8, stat=status )
- IF_NOT_OK_RETURN(status=1)
- case default
- write (gol,'("INTERNAL - unsupported data type : ",i6)') xtype; call goErr
- TRACEBACK; status=1; return
- end select
-
- ! ok
- status = 0
-
- end subroutine MDF_Show_Data
- end module MDF
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