# Platform dependent configuration functions for the 'beskow' machine #(beskow.pdc.kth.se) function configure() { # This function should configure all settings/modules needed to # later prepare the EC-Earth run directory and set variables used # in the run script # Configure paths for building/running EC-Earth ecearth_src_dir=[[[PLT:ACTIVE:ECEARTH_SRC_DIR]]] run_dir=[[[PLT:ACTIVE:RUN_DIR]]] ini_data_dir=[[[PLT:ACTIVE:INI_DATA_DIR]]] # File for standard output. # NOTE: This will be modified for restart jobs! stdout_file=${start_dir}/out/$(basename ${SLURM_JOB_NAME}).out # Resubmit this job for automatic restarts? [true/false] # Also, add options for the resubmit command here. resubmit_job=[[[PLT:ACTIVE:RESUBMIT_JOB]]] resubmit_opt="[[[PLT:ACTIVE:RESUBMIT_OPT]]]" # Configure grib api paths export GRIB_DEFINITION_PATH=[[[PLT:ACTIVE:ECEARTH_SRC_DIR]]]/util/grib_table_126:[[[PLT:ACTIVE:GRIBAPI_BASE_DIR]]]/[[[PLT:ACTIVE:GRIBAPI_DEFINITION_SUBDIR]]] export GRIB_SAMPLES_PATH=[[[PLT:ACTIVE:GRIBAPI_BASE_DIR]]]/[[[PLT:ACTIVE:GRIBAPI_SAMPLES_SUBDIR]]] export GRIB_BIN_PATH=[[[PLT:ACTIVE:GRIBAPI_BASE_DIR]]]/[[[PLT:ACTIVE:GRIBAPI_BIN_SUBDIR]]] # Configure number of processors per node proc_per_node=[[[PLT:ACTIVE:PROC_PER_NODE]]] # Configure and load modules pre_load_modules_cmd="[[[PLT:ACTIVE:PRE_LOAD_MODULES_CMD]]]" module_list="[[[PLT:ACTIVE:MODULE_LIST]]]" if [ -n "${module_list}" ] then set +u if [ -n "${pre_load_modules_cmd}" ] then ${pre_load_modules_cmd} fi for m in "${module_list}" do eval $(modulecmd sh add $m) done set -u fi # Add directories to the shared library search path if [ -n "[[[PLT:ACTIVE:ADD_TO_LD_LIBRARY_PATH]]]" ] then export LD_LIBRARY_PATH=${LD_LIBRARY_PATH:+${LD_LIBRARY_PATH}:}"[[[PLT:ACTIVE:ADD_TO_LD_LIBRARY_PATH]]]" fi ulimit -s unlimited } function launch() { cmd="aprun" while (( "$#" )) do nranks=$1 executable=./$(basename $2) shift shift cmd+=" -n $nranks $executable" while (( "$#" )) && [ "$1" != "--" ] do cmd+=" $1" shift done shift || true (( "$#" )) && cmd+=" :" done export OMP_NUM_THREADS=1 $cmd } function finalise() { # This function should execute of any post run functionality, e.g. # platform dependent cleaning or a resubmit if ${resubmit_job} && [ $(date -d "${leg_end_date}" +%s) -lt $(date -d "${run_end_date}" +%s) ] then info "Resubmitting job for leg $((leg_number+1))" # Need to go to start_dir to find the run script cd ${start_dir} # Submit command # Note: This does not work if you specify a job name with sbatch -J jobname! sbatch -N ${SLURM_JOB_NUM_NODES} \ -o ${run_dir}/$(basename ${stdout_file}).$(printf %03d $((leg_number+1))) \ -e ${run_dir}/$(basename ${stdout_file}).$(printf %03d $((leg_number+1))) \ -d ${SLURM_JOB_ID} \ ${resubmit_opt} \ ./${SLURM_JOB_NAME} fi }