# Platform dependent configuration functions for the DMI's new CRAY machine in Iceland function configure() { # This function should configure all settings/modules needed to # later prepare the EC-Earth run directory and set variables used # in the run script # Configure paths for building/running EC-Earth export ecearth_src_dir=[[[PLT:ACTIVE:ECEARTH_SRC_DIR]]] export run_dir=[[[PLT:ACTIVE:RUN_DIR]]] export ini_data_dir=[[[PLT:ACTIVE:INI_DATA_DIR]]] # File for standard output. # NOTE: This will be modified for restart jobs! stdout_file=${start_dir}/out/$exp_name.out # Resubmit this job for automatic restarts? [true/false] # Also, add options for the resubmit command here. resubmit_job=[[[PLT:ACTIVE:RESUBMIT_JOB]]] resubmit_opt="[[[PLT:ACTIVE:RESUBMIT_OPT]]]" # Configure GRIBEX paths export LOCAL_DEFINITION_TEMPLATES=[[[PLT:ACTIVE:GRIBEX_DEFINITION_PATH]]] # Configure grib api paths export GRIB_DEFINITION_PATH=[[[PLT:ACTIVE:ECEARTH_SRC_DIR]]]/util/grib_table_126:[[[PLT:ACTIVE:GRIBAPI_BASE_DIR]]]/[[[PLT:ACTIVE:GRIBAPI_DEFINITION_SUBDIR]]] export GRIB_SAMPLES_PATH=[[[PLT:ACTIVE:GRIBAPI_BASE_DIR]]]/[[[PLT:ACTIVE:GRIBAPI_SAMPLES_SUBDIR]]] export GRIB_BIN_PATH=[[[PLT:ACTIVE:GRIBAPI_BASE_DIR]]]/[[[PLT:ACTIVE:GRIBAPI_BIN_SUBDIR]]] # Configure number of processors per node proc_per_node=[[[PLT:ACTIVE:PROC_PER_NODE]]] # Configure and load modules pre_load_modules_cmd="[[[PLT:ACTIVE:PRE_LOAD_MODULES_CMD]]]" module_list="[[[PLT:ACTIVE:MODULE_LIST]]]" if [ -n "${module_list}" ] then set +u if [ -n "${pre_load_modules_cmd}" ] then eval $(echo "${pre_load_modules_cmd}") fi for m in "${module_list}" do module add $m done set -u fi # Add directories to the shared library search path if [ -n "[[[PLT:ACTIVE:ADD_TO_LD_LIBRARY_PATH]]]" ] then export LD_LIBRARY_PATH=${LD_LIBRARY_PATH:+${LD_LIBRARY_PATH}:}"[[[PLT:ACTIVE:ADD_TO_LD_LIBRARY_PATH]]]" fi #hostname ulimit -s unlimited ulimit -v unlimited #ulimit -n 2048 #ulimit -a } function launch() { # version using aprun cmd="/usr/bin/time -p aprun" while (( "$#" )) do nranks=$1 executable=./$(basename $2) shift shift cmd+=" -n $nranks $executable" while (( "$#" )) && [ "$1" != "--" ] do cmd+=" $1" shift done shift || true (( "$#" )) && cmd+=" :" done echo $cmd $cmd } function finalise() { # This function should execute of any post run functionality, e.g. # platform dependent cleaning or a resubmit if ${resubmit_job} && [ $(date -d "${leg_end_date}" +%s) -lt $(date -d "${run_end_date}" +%s) ] then info "Resubmitting job for leg $((leg_number+1))" # go to submit dir cd ${PBS_O_WORKDIR} # same as ${start_dir} jobname=$exp_name.$(printf %03d $((leg_number+1))) log=$(basename ${stdout_file}).$(printf %03d $((leg_number+1))) cat > run_ece-esm.job << EOF #!/bin/bash #PBS -q hpc #PBS -N ${jobname} #PBS -l select=10 #PBS -l place=scatter #PBS -l walltime=4:00:00 #PBS -j oe #PBS -o out/${log} cd \$PBS_O_WORKDIR mkdir -p out ./ece-esm.sh exit EOF # Submit command set -x qsub ./run_ece-esm.job set +x else info "Not resubmitting." fi }