easyconfigs

easybuild

EasyBuild is a software build and installation framework that allows you to manage software in an efficient way: (http://easybuild.readthedocs.io/en/latest/Introduction.html). This repo provides additional easyconfigs for ELIC ecosystem

Install

rmdir /opt/easybuild/configs
git clone git@gogs.static:pbarriat/easyconfigs.git /opt/easybuild/configs

Requirements

• openSUSE :

gcc-c++ patch libopenssl-devel gperf gmp-devel isl-devel

• CentOS :

openssl-devel libibverbs-devel liberation-fonts autoconf automake binutils bison flex gcc gcc-c++ gettext
libtool make patch pkgconfig bzip2 unzip jq-devel v8-devel postgresql-devel tcsh check-devel unixODBC*

• ubuntu :

gcc g++ gfortran libibverbs-dev pkg-config check csh

Getting started

Check if you have the lastest easybuild version:

module load easybuild
pip install easybuild --upgrade --install-option "--prefix=/opt/easybuild/app"

Then call screen and start install stuffs...

Python2 packages

Fix /opt/modules/all/GEOS/VERSION.lua by adding setenv("GEOS_DIR", root)

pip install --upgrade pip

pip install cffi geos netcdf4 cdo geoval cartopy iris matplotlib ipython pyproj scikit-image pillow pandas xarray joblib six gdal shapely rasterio geopandas pytest boto3 salem motionless progressbar2 fiona geopandas configobj https://github.com/matplotlib/basemap/archive/v1.2.0rel.tar.gz

pip install spyder python_qt_binding python-qt Qt.py ecmwf-api-client pybufr-ecmwf PySide

Python3 packages

Fix /opt/modules/all/GEOS/VERSION.lua by adding setenv("GEOS_DIR", root)

pip install --upgrade pip

pip install cffi geos netcdf4 cdo geoval cartopy matplotlib ipython pyproj scikit-image pillow pandas xarray joblib six gdal shapely rasterio geopandas pytest boto3 salem motionless progressbar2 fiona geopandas configobj https://github.com/matplotlib/basemap/archive/v1.2.0rel.tar.gz

pip install spyder python_qt_binding python-qt Qt.py ecmwf-api-client pybufr-ecmwf 

R packages

module purge
module load R
cd /opt/easybuild/easyconfigs/utils
Rscript ipak.R

Matlab 2013a

rsync -av 10.90.90.50:/opt/software/MATLAB/2013a /opt/software/MATLAB
scp 10.90.90.50:/opt/modules/all/MATLAB/2013a.lua /opt/modules/all/MATLAB

Intel oneAPI

https://www.intel.com/content/www/us/en/develop/documentation/get-started-with-intel-oneapi-render-linux/top/configure-your-system.html

https://en.opensuse.org/SDB:Install_oneAPI