easyconfigs/foss-2018b/ELIC-0.2-foss-2018b-Python-3.6.6.eb

easyblock = 'Binary'

name = 'ELIC'
version = '0.2'
versionsuffix = '-Python-%(pyver)s'

homepage = 'https://gogs.elic.ucl.ac.be'
description = """This repo provides additional Python and R extensions for ELIC ecosystem."""

toolchain = {'name': 'foss', 'version': '2018b'}
toolchainopts = {'pic': True}

source_urls = ['https://github.com/ESMValGroup/ESMValTool/archive/']
sources = [{'filename': 'ESMValTool.tar.gz', 'download_filename': 'v2.0a1.tar.gz'}]

dependencies = [
    ('Python', '3.6.6'),
    ('ELIC', '0.1', versionsuffix),
]

exts_defaultclass = 'PythonPackage'
exts_default_options = {
    'source_tmpl': '%(name)s-%(version)s.tar.gz',
}

exts_classmap = {
    'ncdf4': 'RPackage',
    'gdtools': 'RPackage',
    'leaflet': 'RPackage',
    'satellite': 'RPackage',
    'sf': 'RPackage',
    'svglite': 'RPackage',
    'mapview': 'RPackage'
}
exts_list = [
    # Python deps, order is important!
    ('matplotlib', '3.0.3', {
        'modulename': 'matplotlib',
        'source_tmpl': 'v%(version)s.tar.gz',
        'source_urls': ['https://github.com/matplotlib/matplotlib/archive/'],
    }),
    ('astropy', '3.1.2', {
        'modulename': 'skimage',
        'source_urls': ['https://pypi.python.org/packages/source/a/astropy/'],
    }),
    ('oktopus', '0.1.2', {
        'modulename': 'skimage',
        'source_urls': ['https://pypi.python.org/packages/source/o/oktopus/'],
    }),
    ('bs4', '0.0.1', {
        'modulename': 'skimage',
        'source_urls': ['https://pypi.python.org/packages/source/b/bs4/'],
    }),
    ('tqdm', '4.31.1', {
        'modulename': 'skimage',
        'source_urls': ['https://pypi.python.org/packages/source/t/tqdm/'],
    }),
    ('PyKE', '3.1.0', {
        'modulename': 'pyke',
        'source_tmpl': 'v%(version)s.tar.gz',
        'source_urls': ['https://github.com/KeplerGO/pyke/archive/'],
    }),
    ('scitools-iris', '2.2.0', {
        'modulename': 'iris',
        'source_tmpl': 'v%(version)s.tar.gz',
        'source_urls': ['https://github.com/SciTools/iris/archive/'],
        'checksums': ['e4b52e43da16b72af9ccbcb4d53bc401'],
    }),
    ('basemap', '1.2.0rel', {
        'modulename': 'mpl_toolkits.basemap',
        'source_tmpl': 'v%(version)s.tar.gz',
        'source_urls': ['https://github.com/matplotlib/basemap/archive'],
    }),
    ###############################################################"
    ('scipy', '1.2.1', {
        'source_urls': ['https://pypi.python.org/packages/source/s/scipy/'],
    }),            
    ('six', '1.12.0', {
        'source_urls': ['https://pypi.python.org/packages/source/s/six/'],
    }),
    ('virtualenv', '16.4.3', {
        'source_urls': ['https://pypi.python.org/packages/source/x/virtualenv/'],
    }),
    ('xlrd', '1.2.0', {
        'source_urls': ['https://pypi.python.org/packages/source/x/xlrd/'],
    }),
    ('affine', '2.2.2', {
        'source_urls': ['https://pypi.python.org/packages/source/a/affine/'],
    }),          
    ('atomicwrites', '1.3.0', {
        'source_urls': ['https://pypi.python.org/packages/source/a/atomicwrites/'],
    }),
    ('boto3', '1.9.116', {
        'source_urls': ['https://pypi.python.org/packages/source/b/boto3/'],
    }),
    ('botocore', '1.12.116', {
        'source_urls': ['https://pypi.python.org/packages/source/b/botocore/'],
    }),          
    ('bottleneck', '1.2.1', {
        'modulename': 'bottleneck',
        'source_tmpl': 'v%(version)s.tar.gz',
        'source_urls': ['https://github.com/kwgoodman/bottleneck/archive/'],
    }),
     ('click', '7.0', {
        'modulename': 'click',
        'source_tmpl': '%(version)s.tar.gz',
        'source_urls': ['https://github.com/pallets/click/archive/'],
    }),      
    ('click-plugins', '1.0.4', {
        'source_urls': ['https://pypi.python.org/packages/source/c/click-plugins/'],
    }),
    ('cligj', '0.5.0', {
        'source_urls': ['https://pypi.python.org/packages/source/c/cligj/'],
    }),          
    ('cloudpickle', '0.8.0', {
        'source_urls': ['https://pypi.python.org/packages/source/c/cloudpickle/'],
    }),
    ('configobj', '5.0.6', {
        'source_urls': ['https://pypi.python.org/packages/source/c/configobj/'],
    }), 
    ('docutils', '0.14', {
        'source_urls': ['https://pypi.python.org/packages/source/d/docutils/'],
    }),          
    ('fiona', '1.8.6', {
        'modulename': 'fiona',
        'source_tmpl': '%(version)s.tar.gz',
        'source_urls': ['https://github.com/Toblerity/Fiona/archive/'],
    }),
    ('geopandas', '0.4.1', {
        'source_urls': ['https://pypi.python.org/packages/source/g/geopandas/'],
    }),
    ('jmespath', '0.9.4', {
        'source_urls': ['https://pypi.python.org/packages/source/j/jmespath/'],
    }),          
    ('more-itertools', '5.0.0', {
        'source_urls': ['https://pypi.python.org/packages/source/m/more-itertools/'],
    }),
    ('motionless', '1.3.2', {
        'source_urls': ['https://pypi.python.org/packages/source/m/motionless/'],
    }),     
    ('munch', '2.3.2', {
        'source_urls': ['https://pypi.python.org/packages/source/m/munch/'],
    }),
    ('networkx', '2.2', {
        'modulename': 'networkx',
        'source_tmpl': 'networkx-%(version)s.tar.gz',
        'source_urls': ['https://github.com/networkx/networkx/archive/'],
    }),          
    ('pathlib2', '2.3.3', {
        'source_urls': ['https://pypi.python.org/packages/source/p/pathlib2/'],
    }),
    ('pluggy', '0.9.0', {
        'source_urls': ['https://pypi.python.org/packages/source/p/pluggy/'],
    }),   
    ('py', '1.8.0', {
        'source_urls': ['https://pypi.python.org/packages/source/p/py/'],
    }),           
    ('pytest', '4.3.1', {
        'source_urls': ['https://pypi.python.org/packages/source/p/pytest/'],
    }),   
    ('python-utils', '2.3.0', {
        'source_urls': ['https://pypi.python.org/packages/source/p/python-utils/'],
    }),
    ('rasterio', '1.0.21', {
        'source_urls': ['https://pypi.python.org/packages/source/r/rasterio/'],
    }), 
    ('s3transfer', '0.2.0', {
        'source_urls': ['https://pypi.python.org/packages/source/s/s3transfer/'],
    }),   
    ('scandir', '1.10.0', {
        'source_urls': ['https://pypi.python.org/packages/source/s/scandir/'],
    }),
    ('snuggs', '1.4.3', {
        'source_urls': ['https://pypi.python.org/packages/source/s/snuggs/'],
    }),
    ('xarray', '0.11.3', {
        'source_urls': ['https://pypi.python.org/packages/source/x/xarray/'],
    }),
    ('py-expression-eval', '0.3.6', {
        'modulename': 'py_expression_eval',
        'source_tmpl': 'v%(version)s.tar.gz',
        'source_urls': ['https://github.com/Axiacore/py-expression-eval/archive/'],
    }),
    ('PyWavelets', '1.0.2', {
        'modulename': 'pywt',
        'source_urls': ['https://pypi.python.org/packages/source/p/PyWavelets/'],
    }),
    ('attrs', '19.1.0', {
        'modulename': 'attr',
        'source_urls': ['https://pypi.python.org/packages/source/a/attrs/'],
    }),
    ('progressbar2', '3.39.3', {
        'modulename': 'progressbar',
        'source_urls': ['https://pypi.python.org/packages/source/p/progressbar2/'],
    }),
    ('scikit-image', '0.14.2', {
        'modulename': 'skimage',
        'source_urls': ['https://pypi.python.org/packages/source/s/scikit-image/'],
    }),
    ################################
    ('futures', '3.2.0', {
        'modulename': '__future__',
        'source_urls': ['https://pypi.python.org/packages/source/f/futures/'],
    }),
    ('PyNaCl', '1.3.0', {
        'modulename': 'nacl',
        'source_urls': ['https://pypi.python.org/packages/source/p/PyNaCl/'],
    }),
    ################################
    # R extension
    ('ncdf4', '1.16', {
        'source_tmpl': '%(name)s_%(version)s.tar.gz',
        'source_urls': [
            'http://cran.r-project.org/src/contrib/Archive/ncdf4',
            'http://cran.r-project.org/src/contrib/',
            'http://cran.freestatistics.org/src/contrib',
        ],
        'checksums': ['edd5731a805bbece3a8f6132c87c356deafc272351e1dd07256ca00574949253'],
    }),
    ('gdtools', '0.1.7', {
        'source_tmpl': '%(name)s_%(version)s.tar.gz',
        'source_urls': [
            'http://cran.r-project.org/src/contrib/Archive/gdtools',
            'http://cran.r-project.org/src/contrib/',
            'http://cran.freestatistics.org/src/contrib',
        ],
    }),
    ('leaflet', '2.0.2', {
        'source_tmpl': '%(name)s_%(version)s.tar.gz',
        'source_urls': [
            'http://cran.r-project.org/src/contrib/Archive/leaflet',
            'http://cran.r-project.org/src/contrib/',
            'http://cran.freestatistics.org/src/contrib',
        ],
    }),
    ('satellite', '1.0.1', {
        'source_tmpl': '%(name)s_%(version)s.tar.gz',
        'source_urls': [
            'http://cran.r-project.org/src/contrib/Archive/satellite',
            'http://cran.r-project.org/src/contrib/',
            'http://cran.freestatistics.org/src/contrib',
        ],
    }),
    ('sf', '0.7-3', {
        'source_tmpl': '%(name)s_%(version)s.tar.gz',
        'source_urls': [
            'http://cran.r-project.org/src/contrib/Archive/sf',
            'http://cran.r-project.org/src/contrib/',
            'http://cran.freestatistics.org/src/contrib',
        ],
    }),
    ('svglite', '1.2.1', {
        'source_tmpl': '%(name)s_%(version)s.tar.gz',
        'source_urls': [
            'http://cran.r-project.org/src/contrib/Archive/svglite',
            'http://cran.r-project.org/src/contrib/',
            'http://cran.freestatistics.org/src/contrib',
        ],
    }),
    ('mapview', '2.6.3', {
        'source_tmpl': '%(name)s_%(version)s.tar.gz',
        'source_urls': [
            'http://cran.r-project.org/src/contrib/Archive/mapview',
            'http://cran.r-project.org/src/contrib/',
            'http://cran.freestatistics.org/src/contrib',
        ],
    }),
]

sanity_check_paths = {
    'files': ['sf/libs/sf.so'],
    'dirs': [],
}

postinstallcmds = [
    "cd %(installdir)s/bin && " +
    'chmod 755 pip'
]

modextrapaths = {
    'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',
    'PYTHONUSERBASE': '',
    'R_LIBS': '',
}

moduleclass = 'numlib'