Update foss 2019a

foss-2019a/ELIC_Python-1-foss-2019a-Python-3.7.2.eb

@@ -64,13 +64,13 @@ exts_list = [
 modextrapaths = {
     'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',
     'PYTHONUSERBASE': '',
-    'R_LIBS': '',
 }
 
-#pip install olefile Pillow pyproj pyshp chardet urllib3 certifi requests OWSLib netCDF4 geoval cdo Shapely dask astropy oktopus bs4 tqdm cf-units cftime pyugrid cycler singledispatch backports_abc tornado toolz patsy statsmodels nc-time-axis yamale psutil bcrypt cffi cryptography Cython decorator mpi4py numpy pandas pbr pycparser scipy six virtualenv xlrd affine atomicwrites boto3 botocore click click-plugins cligj cloudpickle configobj docutils fiona geopandas jmespath more-itertools motionless munch networkx pathlib2 pluggy py pytest python-utils rasterio s3transfer scandir snuggs xarray py-expression-eval PyWavelets attrs progressbar2 scikit-image PyNaCl descartes graphviz wcwidth Bottleneck pickleshare simplegeneric prompt_toolkit Pygments ptyprocess pexpect typelib testpath parso jedi backcall scikit-learn ldap3 skills XlsxWriter retrying pyrsistent jsonschema --user
-
-#https://github.com/SciTools/cartopy.git
-#https://github.com/SciTools/iris.git
-#pip install . --user
+postinstallcmds = [
+    "cd %(installdir)s && " +
+    'pip install setuptools --upgrade && ' +
+    'pip install olefile Pillow pyproj pyshp chardet urllib3 --install-option "--prefix=%(installdir)s" '
+    #'pip install olefile Pillow pyproj pyshp chardet urllib3 certifi requests OWSLib netCDF4 geoval cdo Shapely dask astropy oktopus bs4 tqdm cf-units cftime pyugrid cycler singledispatch backports_abc tornado toolz patsy statsmodels nc-time-axis yamale psutil bcrypt cffi cryptography Cython decorator mpi4py numpy pandas pbr pycparser scipy six virtualenv xlrd affine atomicwrites boto3 botocore click click-plugins cligj cloudpickle configobj docutils fiona geopandas jmespath more-itertools motionless munch networkx pathlib2 pluggy py pytest python-utils rasterio s3transfer scandir snuggs xarray py-expression-eval PyWavelets attrs progressbar2 scikit-image PyNaCl descartes graphviz wcwidth Bottleneck pickleshare simplegeneric prompt_toolkit Pygments ptyprocess pexpect typelib testpath parso jedi backcall scikit-learn ldap3 skills XlsxWriter retrying pyrsistent jsonschema --install-option "--prefix=%(installdir)s" '
+]
 
 moduleclass = 'numlib'

foss-2019a/ELIC_R-1-foss-2019a-Python-3.7.2.eb

@@ -1,596 +0,0 @@
-easyblock = 'PythonBundle'
-
-name = 'ELIC'
-version = '1'
-versionsuffix = '-Python-%(pyver)s'
-
-homepage = 'https://gogs.elic.ucl.ac.be'
-description = """This repo provides additional Python and R extensions for ELIC ecosystem."""
-
-toolchain = {'name': 'foss', 'version': '2019a'}
-
-builddependencies = [
-    ('pkg-config', '0.29.2'),
-]
-
-#pip olefile Pillow pyproj pyshp chardet urllib3 certifi requests OWSLib netCDF4 geoval cdo Shapely Cartopy dask astropy oktopus bs4 tqdm PyKE cf-units cftime pyugrid mo_pack cycler singledispatch backports_abc tornado toolz patsy statsmodels nc-time-axis yamale stratify psutil bcrypt cffi cryptography Cython decorator mpi4py numpy pandas pbr pycparse scipy six virtualenv xlrd affine atomicwrites boto3 botocore click click-plugins cligj cloudpickle configob docutils fiona geopandas jmespath more-itertools motionle munch networkx pathlib2 pluggy py pytest python-utils rasterio s3transf scandir snuggs xarray py-expression-eval PyWavele attrs progressbar2 scikit-image PyNaCl descartes graphviz wcwidth Bottleneck pickleshare simplegeneric prompt_toolkit Pygments ptyprocess pexpect typelib testpath parso jedi backcall scikit-learn basemap ldap3 skills XlsxWriter retrying pyrsistent 
-
-dependencies = [
-    ('Python', '3.7.2'),
-    ('R', '3.6.0'),
-    ('matplotlib', '3.1.0', versionsuffix),
-    ('GEOS', '3.7.2', versionsuffix),
-    ('GDAL', '3.0.0', versionsuffix),
-    ('NCL', '6.6.2'),
-    ('CDO', '1.9.7.1'),
-    ('NCO', '4.8.0'),
-    ('ncview', '2.1.7'),
-    #('GTK+', '3.24.7', versionsuffix),
-    #('PyGObject', '3.28.3', versionsuffix),
-    #('libmo_unpack', '3.1.2'),
-    #('numba', '0.43.0', versionsuffix),
-]
-
-exts_defaultclass = 'PythonPackage'
-exts_default_options = {
-    'source_tmpl': '%(name)s-%(version)s.tar.gz',
-}
-
-exts_classmap = {
-    'ncdf4': 'RPackage',
-    'gdtools': 'RPackage',
-    'leaflet': 'RPackage',
-    'satellite': 'RPackage',
-    'sf': 'RPackage',
-    'svglite': 'RPackage',
-    'mapview': 'RPackage',
-    'MuMIn': 'RPackage',
-    'BayesianTools': 'RPackage'
-}
-exts_list = [
-    # Python deps, order is important!
-    ('pip', '19.0.3', {
-        'modulename': 'pip',
-        'source_tmpl': '%(version)s.tar.gz',
-        'source_urls': ['https://github.com/pypa/pip/archive/'],
-    }),
-    ('olefile', '0.45.1', {
-        'source_tmpl': '%(name)s-%(version)s.zip',
-        'source_urls': ['https://pypi.python.org/packages/source/o/olefile/'],
-        'checksums': ['2b6575f5290de8ab1086f8c5490591f7e0885af682c7c1793bdaf6e64078d385'],
-    }),
-    ('Pillow', '4.3.0', {
-        'modulename': 'PIL',
-        'source_urls': ['https://pypi.python.org/packages/source/p/Pillow/'],
-        'checksums': ['a97c715d44efd5b4aa8d739b8fad88b93ed79f1b33fc2822d5802043f3b1b527'],
-    }),
-    ('pyproj', '1.9.5.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/pyproj/'],
-        'checksums': ['53fa54c8fa8a1dfcd6af4bf09ce1aae5d4d949da63b90570ac5ec849efaf3ea8'],
-    }),
-    ('pyshp', '2.1.0', {
-        'modulename': 'shapefile',
-        'source_urls': ['https://pypi.python.org/packages/source/p/pyshp/'],
-    }),
-    ('chardet', '3.0.4', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/chardet/'],
-        'checksums': ['84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae'],
-    }),
-    ('urllib3', '1.24.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/u/urllib3/'],
-    }),
-    ('certifi', '2019.3.9', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/certifi/'],
-    }),
-    ('requests', '2.21.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/r/requests/'],
-    }),
-    ('OWSLib', '0.17.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/o/OWSLib/'],
-    }),
-    ('netCDF4', '1.3.1', {
-        'modulename': 'netCDF4',
-        'source_urls': ['https://pypi.python.org/packages/source/n/netCDF4/'],
-        'checksums': ['570ea59992aa6d98a9b672c71161d11ba5683f787da53446086077470a869957'],
-    }),
-    ('geoval', '0.1.5', {
-        'source_urls': ['https://pypi.python.org/packages/source/g/geoval/'],
-        'checksums': ['7da4a1879f78bb7aac2d41b5c1ee360ff74087bf857c81c532deb8cc31feb36e'],
-    }),
-    ('cdo', '1.3.6', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cdo/'],
-        'checksums': ['b167efbbac7d0a6cbf74f5d211255705c73245f7c2590b6d9eb634347d8b2c1f'],
-    }),
-    ('Shapely', '1.6.4.post2', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/Shapely/'],
-    }),
-    ('Cartopy', '0.17.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/Cartopy/'],
-    }),
-    ('dask', '1.1.4', {
-        'source_urls': ['https://pypi.python.org/packages/source/d/dask/'],
-    }),
-    ('astropy', '3.1.2', {
-        'modulename': 'astropy',
-        'source_urls': ['https://pypi.python.org/packages/source/a/astropy/'],
-    }),
-    ('oktopus', '0.1.2', {
-        'modulename': 'oktopus',
-        'source_urls': ['https://pypi.python.org/packages/source/o/oktopus/'],
-    }),
-    ('bs4', '0.0.1', {
-        'modulename': 'bs4',
-        'source_urls': ['https://pypi.python.org/packages/source/b/bs4/'],
-    }),
-    ('tqdm', '4.31.1', {
-        'modulename': 'tqdm',
-        'source_urls': ['https://pypi.python.org/packages/source/t/tqdm/'],
-    }),
-    ('PyKE', '3.1.0', {
-        'modulename': 'pyke',
-        'source_tmpl': 'v%(version)s.tar.gz',
-        'source_urls': ['https://github.com/KeplerGO/pyke/archive/'],
-    }),
-    ('cf-units', '2.1.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cf_units/'],
-    }), 
-    ('cftime', '1.0.3.4rel', {
-        'modulename': 'cftime',
-        'source_tmpl': 'v%(version)s.tar.gz',
-        'source_urls': ['https://github.com/Unidata/cftime/archive/'],
-    }), 
-    ('pyugrid', '0.3.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/pyugrid/'],
-        'checksums': ['eddadc1e88c0e801f780b1e6f636fbfc00e3d14cdab82b43300fde0918310053'],
-    }),
-    ('mo_pack', '0.2.0', {
-        'source_tmpl': 'v%(version)s.tar.gz',
-        'source_urls': ['https://github.com/SciTools/mo_pack/archive/'],
-        'checksums': ['4aa70e1f846b666670843bc2514435dedf7393203e88abaf74d48f8f2717a726'],
-    }),
-    ('cycler', '0.10.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cycler/'],
-        'checksums': ['cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8'],
-    }),
-    ('singledispatch', '3.4.0.3', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/singledispatch/'],
-        'checksums': ['5b06af87df13818d14f08a028e42f566640aef80805c3b50c5056b086e3c2b9c'],
-    }),
-    ('backports_abc', '0.5', {
-        'source_urls': ['https://pypi.python.org/packages/source/b/backports_abc/'],
-        'checksums': ['033be54514a03e255df75c5aee8f9e672f663f93abb723444caec8fe43437bde'],
-    }), 
-    ('tornado', '5.1.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/t/tornado/'],
-    }),
-    ('toolz', '0.9.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/t/toolz/'],
-        'checksums': ['929f0a7ea7f61c178bd951bdae93920515d3fbdbafc8e6caf82d752b9b3b31c9'],
-    }),
-    ('patsy', '0.5.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/patsy/'],
-        'checksums': ['e05f38d5c38c8d216f0cc2b765b1069b433c92d628b954fb2fee68d13e42883b'],
-    }),
-    ('statsmodels', '0.9.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/statsmodels/'],
-        'checksums': ['6461f93a842c649922c2c9a9bc9d9c4834110b89de8c4af196a791ab8f42ba3b'],
-    }),
-    ('nc-time-axis', '1.1.0', {
-        'modulename': 'nc_time_axis',
-        'source_urls': ['https://pypi.python.org/packages/source/n/nc-time-axis/'],
-        'checksums': ['ea9d4f7f9e9189c96f7d320235ac6c4be7f63dc5aa256b3ee5d5cca5845e6e26'],
-    }),
-    ('yamale', '1.10.0', {
-        'modulename': 'yamale',
-        'source_urls': ['https://pypi.python.org/packages/source/y/yamale/'],
-    }),
-    ('stratify', '0.2', {
-        'modulename': 'stratify',
-        'source_tmpl': 'master.zip',
-        'source_urls': ['https://github.com/SciTools-incubator/python-stratify/archive/'],
-    }),
-    ('psutil', '5.6.1', {
-        'modulename': 'psutil',
-        'source_urls': ['https://pypi.python.org/packages/source/p/psutil/'],
-        'checksums': ['fa0a570e0a30b9dd618bffbece590ae15726b47f9f1eaf7518dfb35f4d7dcd21'],
-    }),
-    ('bcrypt', '3.1.6', {
-        'source_urls': ['https://pypi.python.org/packages/source/b/bcrypt/'],
-    }),
-    ('cffi', '1.12.2', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cffi/'],
-    }),
-    ('cryptography', '2.6.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cryptography/'],
-    }),
-    ('Cython', '0.29.6', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/Cython/'],
-    }),
-    ('decorator', '4.4.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'],
-    }),
-    ('mpi4py', '3.0.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/m/mpi4py/'],
-    }),
-    ('numpy', '1.16.2', {
-        'modulename': 'numpy',
-        'source_tmpl': 'v%(version)s.tar.gz',
-        'source_urls': ['https://github.com/numpy/numpy/archive/'],
-    }),
-    ('pandas', '0.24.2', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/pandas/'],
-    }),
-    ('pbr', '5.1.3', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'],
-    }),
-    ('pycparser', '2.19', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/pycparser/'],
-    }),
-    ('scipy', '1.2.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/scipy/'],
-    }),            
-    ('six', '1.12.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/six/'],
-    }),
-    ('virtualenv', '16.4.3', {
-        'source_urls': ['https://pypi.python.org/packages/source/x/virtualenv/'],
-    }),
-    ('xlrd', '1.2.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/x/xlrd/'],
-    }),
-    ('affine', '2.2.2', {
-        'source_urls': ['https://pypi.python.org/packages/source/a/affine/'],
-    }),          
-    ('atomicwrites', '1.3.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/a/atomicwrites/'],
-    }),
-    ('boto3', '1.9.116', {
-        'source_urls': ['https://pypi.python.org/packages/source/b/boto3/'],
-    }),
-    ('botocore', '1.12.116', {
-        'source_urls': ['https://pypi.python.org/packages/source/b/botocore/'],
-    }),          
-     ('click', '7.0', {
-        'modulename': 'click',
-        'source_tmpl': '%(version)s.tar.gz',
-        'source_urls': ['https://github.com/pallets/click/archive/'],
-    }),      
-    ('click-plugins', '1.0.4', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/click-plugins/'],
-    }),
-    ('cligj', '0.5.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cligj/'],
-    }),          
-    ('cloudpickle', '0.8.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/cloudpickle/'],
-    }),
-    ('configobj', '5.0.6', {
-        'source_urls': ['https://pypi.python.org/packages/source/c/configobj/'],
-    }), 
-    ('docutils', '0.14', {
-        'source_urls': ['https://pypi.python.org/packages/source/d/docutils/'],
-    }),          
-    ('fiona', '1.8.6', {
-        'modulename': 'fiona',
-        'source_tmpl': '%(version)s.tar.gz',
-        'source_urls': ['https://github.com/Toblerity/Fiona/archive/'],
-    }),
-    ('geopandas', '0.4.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/g/geopandas/'],
-    }),
-    ('jmespath', '0.9.4', {
-        'source_urls': ['https://pypi.python.org/packages/source/j/jmespath/'],
-    }),          
-    ('more-itertools', '5.0.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/m/more-itertools/'],
-    }),
-    ('motionless', '1.3.2', {
-        'source_urls': ['https://pypi.python.org/packages/source/m/motionless/'],
-    }),     
-    ('munch', '2.3.2', {
-        'source_urls': ['https://pypi.python.org/packages/source/m/munch/'],
-    }),
-    ('networkx', '2.2', {
-        'modulename': 'networkx',
-        'source_tmpl': 'networkx-%(version)s.tar.gz',
-        'source_urls': ['https://github.com/networkx/networkx/archive/'],
-    }),          
-    ('pathlib2', '2.3.3', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/pathlib2/'],
-    }),
-    ('pluggy', '0.9.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/pluggy/'],
-    }),   
-    ('py', '1.8.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/py/'],
-    }),           
-    ('pytest', '4.3.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/pytest/'],
-    }),   
-    ('python-utils', '2.3.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/p/python-utils/'],
-    }),
-    ('rasterio', '1.0.21', {
-        'source_urls': ['https://pypi.python.org/packages/source/r/rasterio/'],
-    }), 
-    ('s3transfer', '0.2.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/s3transfer/'],
-    }),   
-    ('scandir', '1.10.0', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/scandir/'],
-    }),
-    ('snuggs', '1.4.3', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/snuggs/'],
-    }),
-    ('xarray', '0.11.3', {
-        'source_urls': ['https://pypi.python.org/packages/source/x/xarray/'],
-    }),
-    ('py-expression-eval', '0.3.6', {
-        'modulename': 'py_expression_eval',
-        'source_tmpl': 'v%(version)s.tar.gz',
-        'source_urls': ['https://github.com/Axiacore/py-expression-eval/archive/'],
-    }),
-    ('PyWavelets', '1.0.2', {
-        'modulename': 'pywt',
-        'source_urls': ['https://pypi.python.org/packages/source/p/PyWavelets/'],
-    }),
-    ('attrs', '19.1.0', {
-        'modulename': 'attr',
-        'source_urls': ['https://pypi.python.org/packages/source/a/attrs/'],
-    }),
-    ('progressbar2', '3.39.3', {
-        'modulename': 'progressbar',
-        'source_urls': ['https://pypi.python.org/packages/source/p/progressbar2/'],
-    }),
-    ('scikit-image', '0.14.2', {
-        'modulename': 'skimage',
-        'source_urls': ['https://pypi.python.org/packages/source/s/scikit-image/'],
-    }),
-    ('PyNaCl', '1.3.0', {
-        'modulename': 'nacl',
-        'source_urls': ['https://pypi.python.org/packages/source/p/PyNaCl/'],
-    }),
-    ('descartes', '1.1.0', {
-        'modulename': 'descartes',
-        'source_urls': ['https://pypi.python.org/packages/source/d/descartes/'],
-        'checksums': ['135a502146af5ed6ff359975e2ebc5fa4b71b5432c355c2cafdc6dea1337035b'],
-    }),
-    ('graphviz', '0.10.1', {
-        'modulename': 'graphviz',
-        'source_tmpl': '%(version)s.tar.gz',
-        'source_urls': ['https://github.com/xflr6/graphviz/archive/'],
-    }),
-    ('wcwidth', '0.1.7', {
-        'modulename': 'wcwidth',
-        'source_urls': ['https://pypi.python.org/packages/source/w/wcwidth/'],
-    }),
-    ('Bottleneck', '1.2.1', {
-        'modulename': 'bottleneck',
-        'source_urls': ['https://pypi.python.org/packages/source/b/Bottleneck/'],
-    }),
-    ('pickleshare', '0.7.5', {
-        'modulename': 'pickleshare',
-        'source_urls': ['https://pypi.python.org/packages/source/p/pickleshare/'],
-    }),
-    ('simplegeneric', '0.8.1', {
-        'source_tmpl': '%(name)s-%(version)s.zip',
-        'modulename': 'simplegeneric',
-        'source_urls': ['https://pypi.python.org/packages/source/s/simplegeneric/'],
-    }),
-    ('prompt_toolkit', '2.0.9', {
-        'modulename': 'prompt_toolkit',
-        'source_urls': ['https://pypi.python.org/packages/source/p/prompt_toolkit/'],
-    }),
-    ('Pygments', '2.4.2', {
-        'modulename': 'pygments',
-        'source_urls': ['https://pypi.python.org/packages/source/p/Pygments/'],
-    }),
-    ('ptyprocess', '0.6.0', {
-        'modulename': 'ptyprocess',
-        'source_urls': ['https://pypi.python.org/packages/source/p/ptyprocess/'],
-    }),
-    ('pexpect', '4.7.0', {
-        'modulename': 'pexpect',
-        'source_urls': ['https://pypi.python.org/packages/source/p/pexpect/'],
-    }),
-    ('typelib', '0.0.10', {
-        'modulename': 'typelib',
-        'source_urls': ['https://pypi.python.org/packages/source/t/typelib/'],
-    }),
-    ('testpath', '0.4.2', {
-        'modulename': 'testpath',
-        'source_urls': ['https://pypi.python.org/packages/source/t/testpath/'],
-    }),
-    ('parso', '0.4.0', {
-        'modulename': 'parso',
-        'source_urls': ['https://pypi.python.org/packages/source/p/parso/'],
-    }),
-    ('jedi', '0.13.3', {
-        'modulename': 'jedi',
-        'source_urls': ['https://pypi.python.org/packages/source/j/jedi/'],
-    }),
-    ('backcall', '0.1.0', {
-        'modulename': 'backcall',
-        'source_urls': ['https://pypi.python.org/packages/source/b/backcall/'],
-    }),
-    ('scikit-learn', '0.20.3', {
-        'modulename': 'sklearn',
-        'source_urls': ['https://pypi.python.org/packages/source/s/scikit-learn/'],
-    }),
-    ('basemap', '1.2.0rel', {
-        'modulename': 'mpl_toolkits',
-        'source_tmpl': 'v%(version)s.tar.gz',
-        'source_urls': ['https://github.com/matplotlib/basemap/archive'],
-    }),
-    ('ldap3', '2.6', {
-        'modulename': 'ldap3',
-        'source_urls': ['https://pypi.python.org/packages/source/l/ldap3/'],
-    }),
-    ('skills', '0.3.0', {
-        'modulename': 'skills',
-        'source_tmpl': '%(name)s-%(version)s.zip',
-        'source_urls': ['https://pypi.python.org/packages/source/s/skills/'],
-    }),
-    ('XlsxWriter', '1.1.7', {
-        'modulename': 'xlsxwriter',
-        'source_urls': ['https://pypi.python.org/packages/source/x/XlsxWriter/'],
-    }),
-    ('retrying', '1.3.3', {
-        'modulename': 'retrying',
-        'source_urls': ['https://pypi.python.org/packages/source/r/retrying/'],
-    }),
-    ('pyrsistent', '0.15.2', {
-        'modulename': 'pyrsistent',
-        'source_urls': ['https://pypi.python.org/packages/source/p/pyrsistent/'],
-    }),
-    ('jsonschema', '3.0.1', {
-        'modulename': 'jsonschema',
-        'source_urls': ['https://pypi.python.org/packages/source/j/jsonschema/'],
-    }),
-    ('imagesize', '1.1.0', {
-        'modulename': 'imagesize',
-        'source_urls': ['https://pypi.python.org/packages/source/i/imagesize/'],
-    }),
-    ('Babel', '2.7.0', {
-        'modulename': 'babel',
-        'source_urls': ['https://pypi.python.org/packages/source/b/Babel/'],
-    }),
-    ('alabaster', '0.7.12', {
-        'modulename': 'alabaster',
-        'source_urls': ['https://pypi.python.org/packages/source/a/alabaster/'],
-    }),
-    ('sphinxcontrib_htmlhelp', '1.0.2', {
-        'modulename': 'sphinxcontrib_htmlhelp',
-        'source_urls': ['https://pypi.python.org/packages/source/s/sphinxcontrib_htmlhelp/'],
-    }),
-    ('sphinxcontrib_qthelp', '1.0.2', {
-        'modulename': 'sphinxcontrib_qthelp',
-        'source_urls': ['https://pypi.python.org/packages/source/s/sphinxcontrib_qthelp/'],
-    }),
-    ('sphinxcontrib_serializinghtml', '1.1.3', {
-        'modulename': 'sphinxcontrib_serializinghtml',
-        'source_urls': ['https://pypi.python.org/packages/source/s/sphinxcontrib_serializinghtml/'],
-    }),
-    ('sphinxcontrib_devhelp', '1.0.1', {
-        'modulename': 'sphinxcontrib_devhelp',
-        'source_urls': ['https://pypi.python.org/packages/source/s/sphinxcontrib_devhelp/'],
-    }),
-    ('sphinxcontrib_applehelp', '1.0.1', {
-        'modulename': 'sphinxcontrib_applehelp',
-        'source_urls': ['https://pypi.python.org/packages/source/s/sphinxcontrib_applehelp/'],
-    }),
-    ('snowballstemmer', '1.2.1', {
-        'modulename': 'snowballstemmer',
-        'source_urls': ['https://pypi.python.org/packages/source/s/snowballstemmer/'],
-    }),
-    ('sphinxcontrib_jsmath', '1.0.1', {
-        'modulename': 'sphinxcontrib_jsmath',
-        'source_urls': ['https://pypi.python.org/packages/source/s/sphinxcontrib_jsmath/'],
-    }),
-    ('Sphinx', '2.0.1', {
-        'source_urls': ['https://pypi.python.org/packages/source/s/Sphinx/'],
-        'modulename': 'sphinx',
-    }),
-    ('SkillMetrics', '1.1.6', {
-        'modulename': 'skill_metrics',
-        'source_urls': ['https://pypi.python.org/packages/source/s/SkillMetrics/'],
-    }),
-    #('salem', '0.2.4', {
-    #    'modulename': 'salem',
-    #    'source_urls': ['https://pypi.python.org/packages/source/s/salem/'],
-    #    'checksums': ['f29594c31124b9f1198ba3361850d57e180e3ea228bebe08080760195b96558c'],
-    #}),
-    ################################
-    # R extension
-    ('ncdf4', '1.16', {
-        'source_tmpl': '%(name)s_%(version)s.tar.gz',
-        'source_urls': [
-            'http://cran.r-project.org/src/contrib/Archive/ncdf4',
-            'http://cran.r-project.org/src/contrib/',
-            'http://cran.freestatistics.org/src/contrib',
-        ],
-        'checksums': ['edd5731a805bbece3a8f6132c87c356deafc272351e1dd07256ca00574949253'],
-    }),
-    ('gdtools', '0.1.7', {
-        'source_tmpl': '%(name)s_%(version)s.tar.gz',
-        'source_urls': [
-            'http://cran.r-project.org/src/contrib/Archive/gdtools',
-            'http://cran.r-project.org/src/contrib/',
-            'http://cran.freestatistics.org/src/contrib',
-        ],
-    }),
-    ('leaflet', '2.0.2', {
-        'source_tmpl': '%(name)s_%(version)s.tar.gz',
-        'source_urls': [
-            'http://cran.r-project.org/src/contrib/Archive/leaflet',
-            'http://cran.r-project.org/src/contrib/',
-            'http://cran.freestatistics.org/src/contrib',
-        ],
-    }),
-    ('satellite', '1.0.1', {
-        'source_tmpl': '%(name)s_%(version)s.tar.gz',
-        'source_urls': [
-            'http://cran.r-project.org/src/contrib/Archive/satellite',
-            'http://cran.r-project.org/src/contrib/',
-            'http://cran.freestatistics.org/src/contrib',
-        ],
-    }),
-    ('sf', '0.7-3', {
-        'source_tmpl': '%(name)s_%(version)s.tar.gz',
-        'source_urls': [
-            'http://cran.r-project.org/src/contrib/Archive/sf',
-            'http://cran.r-project.org/src/contrib/',
-            'http://cran.freestatistics.org/src/contrib',
-        ],
-    }),
-    ('svglite', '1.2.1', {
-        'source_tmpl': '%(name)s_%(version)s.tar.gz',
-        'source_urls': [
-            'http://cran.r-project.org/src/contrib/Archive/svglite',
-            'http://cran.r-project.org/src/contrib/',
-            'http://cran.freestatistics.org/src/contrib',
-        ],
-    }),
-    ('mapview', '2.6.3', {
-        'source_tmpl': '%(name)s_%(version)s.tar.gz',
-        'source_urls': [
-            'http://cran.r-project.org/src/contrib/Archive/mapview',
-            'http://cran.r-project.org/src/contrib/',
-            'http://cran.freestatistics.org/src/contrib',
-        ],
-    }),
-    ('MuMIn', '1.43.6', {
-        'source_tmpl': '%(name)s_%(version)s.tar.gz',
-        'source_urls': [
-            'http://cran.r-project.org/src/contrib/Archive/MuMIn',
-            'http://cran.r-project.org/src/contrib/',
-            'http://cran.freestatistics.org/src/contrib',
-        ],
-    }),
-    ('BayesianTools', '0.1.6', {
-        'source_tmpl': '%(name)s_%(version)s.tar.gz',
-        'source_urls': [
-            'http://cran.r-project.org/src/contrib/Archive/BayesianTools',
-            'http://cran.r-project.org/src/contrib/',
-            'http://cran.freestatistics.org/src/contrib',
-        ],
-    }),
-]
-
-sanity_check_paths = {
-    'files': ['sf/libs/sf.so'],
-    'dirs': [],
-}
-
-postinstallcmds = [
-    "cd %(installdir)s/bin && " +
-    'chmod 755 pip'
-]
-
-modextrapaths = {
-    'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',
-    'PYTHONUSERBASE': '',
-    'R_LIBS': '',
-}
-
-moduleclass = 'numlib'

foss-2019a/GDAL-3.0.0-foss-2019a-Python-3.7.2.eb

@@ -0,0 +1,51 @@
+easyblock = 'ConfigureMake'
+
+name = 'GDAL'
+version = '3.0.0'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'http://www.gdal.org/'
+description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style
+ Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model
+ to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for
+ data translation and processing."""
+
+toolchain = {'name': 'foss', 'version': '2019a'}
+toolchainopts = {'usempi': True}
+
+source_urls = ['http://download.osgeo.org/gdal/%(version)s/']
+sources = [SOURCELOWER_TAR_XZ]
+checksums = ['ad316fa052d94d9606e90b20a514b92b2dd64e3142dfdbd8f10981a5fcd5c43e']
+
+dependencies = [
+    ('Python', '3.7.2'),
+    ('netCDF', '4.6.2'),
+    ('expat', '2.2.6'),
+    ('GEOS', '3.7.2', '-Python-%(pyver)s'),
+    ('SQLite', '3.27.2'),
+    ('libxml2', '2.9.8'),
+    ('libpng', '1.6.36'),
+    ('libjpeg-turbo', '2.0.2'),
+    ('JasPer', '2.0.14'),
+    ('LibTIFF', '4.0.10'),
+    ('zlib', '1.2.11'),
+    ('cURL', '7.63.0'),
+    ('PCRE', '8.43'),
+    ('PROJ', '6.1.0'),
+    ('libgeotiff', '1.5.1'),
+]
+
+configopts = '--with-expat=$EBROOTEXPAT --with-libz=$EBROOTLIBZ --with-hdf5=$EBROOTHDF5 --with-netcdf=$EBROOTNETCDF'
+configopts += ' --with-xml2=$EBROOTLIBXML2 --with-geos=$EBROOTGEOS/bin/geos-config --with-jpeg=$EBROOTLIBJPEGMINTURBO'
+configopts += ' --with-png=$EBROOTLIBPNG --with-sqlite3=$EBROOTSQLITE --with-jasper=$EBROOTJASPER'
+configopts += ' --with-libtiff=$EBROOTLIBTIFF --with-pcre=$EBROOTPCRE --with-python=$EBROOTPYTHON/bin/python'
+configopts += ' --with-libgeotiff=$EBROOTLIBGEOTIFF'
+
+modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}
+
+sanity_check_paths = {
+    'files': ['lib/libgdal.a', 'lib/libgdal.%s' % SHLIB_EXT],
+    'dirs': ['bin', 'include', 'lib/python%(pyshortver)s/site-packages']
+}
+
+moduleclass = 'data'

foss-2019a/PROJ-6.1.0-GCCcore-8.2.0.eb

@@ -0,0 +1,37 @@
+##
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+#
+# Copyright:: Copyright 2014-2015 The Cyprus Institute
+# Authors:: Thekla Loizou <t.loizou@cyi.ac.cy>
+# License:: MIT/GPL
+#
+##
+easyblock = 'ConfigureMake'
+
+name = 'PROJ'
+version = '6.1.0'
+
+homepage = 'http://trac.osgeo.org/proj/'
+description = """Program proj is a standard Unix filter function which converts 
+geographic longitude and latitude coordinates into cartesian coordinates"""
+
+toolchain = {'name': 'GCCcore', 'version': '8.2.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['http://download.osgeo.org/proj/']
+sources = [SOURCELOWER_TAR_GZ]
+
+builddependencies = [
+    ('pkg-config', '0.29.2'),
+    ('binutils', '2.31.1'),
+]
+
+dependencies = [('SQLite', '3.27.2')]
+
+sanity_check_paths = {
+    'files': ['bin/cct', 'bin/cs2cs', 'bin/geod', 'bin/gie', 'bin/proj', 'bin/projinfo',
+              'lib/libproj.a', 'lib/libproj.%s' % SHLIB_EXT],
+    'dirs': ['include'],
+}
+
+moduleclass = 'lib'

foss-2019a/libgeotiff-1.5.1-GCCcore-8.2.0.eb

@@ -0,0 +1,34 @@
+easyblock = 'ConfigureMake'
+
+name = 'libgeotiff'
+version = '1.5.1'
+
+homepage = 'https://directory.fsf.org/wiki/Libgeotiff'
+description = """Library for reading and writing coordinate system information from/to GeoTIFF files"""
+
+toolchain = {'name': 'GCCcore', 'version': '8.2.0'}
+
+source_urls = ['http://download.osgeo.org/geotiff/libgeotiff']
+sources = [SOURCE_TAR_GZ]
+checksums = ['f9e99733c170d11052f562bcd2c7cb4de53ed405f7acdde4f16195cd3ead612c']
+
+builddependencies = [
+    ('binutils', '2.31.1'),
+]
+
+dependencies = [
+    ('zlib', '1.2.11'),
+    ('LibTIFF', '4.0.10'),
+    ('PROJ', '6.1.0'),
+    ('libjpeg-turbo', '2.0.2'),
+]
+
+configopts = ' --with-libtiff=$EBROOTLIBTIFF --with-proj=$EBROOTPROJ --with-zlib=$EBROOTZLIB'
+configopts += ' --with-jpeg=$EBROOTLIBJPEGMINTURBO'
+
+sanity_check_paths = {
+    'files': ['bin/listgeo', 'lib/libgeotiff.a', 'lib/libgeotiff.%s' % SHLIB_EXT],
+    'dirs': ['include', 'share'],
+}
+
+moduleclass = 'lib'