Nic5 2020a

intel-2020a/ANTLR-2.7.7-GCCcore-9.3.0-Java-11.eb

@@ -0,0 +1,33 @@
+easyblock = 'ConfigureMake'
+
+name = 'ANTLR'
+version = '2.7.7'
+versionsuffix = '-Java-%(javaver)s'
+
+homepage = 'https://www.antlr2.org/'
+description = """ANTLR, ANother Tool for Language Recognition, (formerly PCCTS)
+ is a language tool that provides a framework for constructing recognizers,
+ compilers, and translators from grammatical descriptions containing
+ Java, C#, C++, or Python actions."""
+
+toolchain = {'name': 'GCCcore', 'version': '9.3.0'}
+
+source_urls = ['https://www.antlr2.org/download/']
+sources = [SOURCELOWER_TAR_GZ]
+patches = ['%(name)s-%(version)s_includes.patch']
+checksums = [
+    '853aeb021aef7586bda29e74a6b03006bcb565a755c86b66032d8ec31b67dbb9',  # antlr-2.7.7.tar.gz
+    'd167d3248a03301bc93efcb37d5df959aae6794968e42231af0b0dd26d6a2e66',  # ANTLR-2.7.7_includes.patch
+]
+
+builddependencies = [('binutils', '2.34')]
+dependencies = [('Java', '11', '', True)]
+
+configopts = '--disable-examples --disable-csharp --disable-python'
+
+sanity_check_paths = {
+    'files': ['bin/antlr', 'bin/antlr-config'],
+    'dirs': ['include'],
+}
+
+moduleclass = 'tools'

intel-2020a/CDO-1.9.9-intel-2020a.eb

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+easyblock = 'ConfigureMake'
+
+name = 'CDO'
+version = '1.9.9'
+
+homepage = 'https://code.zmaw.de/projects/cdo'
+description = """CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data."""
+
+toolchain = {'name': 'intel', 'version': '2020a'}
+# stick to lowopt (-O1) to avoid internal compiler error when building on Intel Skylake
+toolchainopts = {'pic': True, 'usempi': True, 'lowopt': True}
+
+source_urls = ['https://code.mpimet.mpg.de/attachments/download/23323/']
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('Python', '3.8.2'),
+    ('HDF5', '1.10.6'),
+    ('netCDF', '4.7.4'),
+    ('YAXT', '0.6.2'),
+    ('ecCodes', '2.19.1'),
+    ('PROJ', '7.0.0'),
+]
+
+configopts = "--with-hdf5=$EBROOTHDF5 --with-netcdf=$EBROOTNETCDF --with-eccodes=$EBROOTECCODES --with-proj=$EBROOTPROJ"
+
+# fix for linking issues with HDF5 libraries for libcdi, should link with both -lnetcdf and -lhdf5_hl -lhdf5
+prebuildopts = "find libcdi -name Makefile | xargs sed -i 's/-lnetcdf -lnetcdf/-lnetcdf -lhdf5_hl -lhdf5/g' && "
+
+sanity_check_paths = {
+    'files': ['bin/cdo'],
+    'dirs': [],
+}
+
+moduleclass = 'data'

intel-2020a/HDF5-1.10.6-iimpi-2020a.eb

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+name = 'HDF5'
+version = '1.10.6'
+
+homepage = 'https://portal.hdfgroup.org/display/support'
+description = """HDF5 is a data model, library, and file format for storing and managing data.
+ It supports an unlimited variety of datatypes, and is designed for flexible
+ and efficient I/O and for high volume and complex data."""
+
+toolchain = {'name': 'iimpi', 'version': '2020a'}
+toolchainopts = {'pic': True, 'usempi': True}
+
+source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['5f9a3ee85db4ea1d3b1fa9159352aebc2af72732fc2f58c96a3f0768dba0e9aa']
+
+configopts = 'FCFLAGS="-O2 -ftz -fp-speculation=safe -fp-model source -fPIC -march=core-avx2 -align array64byte -fma -ftz -fomit-frame-pointer" '
+
+dependencies = [
+    ('zlib', '1.2.11'),
+    ('Szip', '2.1.1'),
+]
+
+moduleclass = 'data'

intel-2020a/NCO-4.9.5-intel-2020a.eb

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+easyblock = 'ConfigureMake'
+
+name = 'NCO'
+version = '4.9.5'
+
+homepage = "http://nco.sourceforge.net"
+description = """manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5"""
+
+toolchain = {'name': 'intel', 'version': '2020a'}
+toolchainopts = {'lowopt': True}
+
+source_urls = ['https://github.com/nco/nco/archive/']
+sources = ['%(version)s.tar.gz']
+
+builddependencies = [
+    ('Bison', '3.5.3'),
+    ('flex', '2.6.4'),
+]
+
+dependencies = [
+    ('UDUNITS', '2.2.26'),
+    ('expat', '2.2.9'),
+    ('ANTLR', '2.7.7', '-Java-11'),
+    ('libdap', '3.20.6'),
+    ('GSL', '2.6'),
+    ('netCDF', '4.7.4'),
+]
+
+sanity_check_paths = {
+    'files': ['bin/nc%s' % x for x in ('ap2', 'atted', 'bo', 'diff', 'ea', 'ecat', 'es',
+                                       'flint', 'ks', 'pdq', 'ra', 'rcat', 'rename', 'wa')] +
+             ['lib/libnco.a', 'lib/libnco.%s' % SHLIB_EXT, 'lib/libnco_c++.a', 'lib/libnco_c++.%s' % SHLIB_EXT],
+    'dirs': ['include'],
+}
+
+moduleclass = 'tools'

intel-2020a/YAXT-0.6.2-iimpi-2020a.eb

@@ -0,0 +1,23 @@
+easyblock = 'ConfigureMake'
+
+name = 'YAXT'
+version = '0.6.2'
+
+homepage = 'https://www.dkrz.de/redmine/projects/yaxt'
+description = "Yet Another eXchange Tool"
+
+toolchain = {'name': 'iimpi', 'version': '2020a'}
+toolchainopts = {'usempi': True}
+
+source_urls = ['https://www.dkrz.de/redmine/attachments/download/492/']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['7fc9b3e5dd2e0d3d5846f389a01c935aa40528eb09d82162b76c061b496a3c5b']
+
+configopts = 'FC="$F90" FCFLAGS="$F90FLAGS -cpp"'
+
+sanity_check_paths = {
+    'files': ['include/yaxt.h', 'include/yaxt.mod', 'lib/libyaxt.a', 'lib/libyaxt.%s' % SHLIB_EXT],
+    'dirs': ['include/xt'],
+}
+
+moduleclass = 'tools'

intel-2020a/ecCodes-2.19.1-iimpi-2020a.eb

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+easyblock = 'CMakeMake'
+
+name = 'ecCodes'
+version = '2.19.1'
+
+homepage = 'https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home'
+description = """ecCodes is a package developed by ECMWF which provides an application programming interface and
+ a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2,
+ WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding)."""
+
+toolchain = {'name': 'iimpi', 'version': '2020a'}
+
+source_urls = ['https://confluence.ecmwf.int/download/attachments/45757960/']
+sources = ['eccodes-%(version)s-Source.tar.gz']
+
+builddependencies = [('CMake', '3.16.4')]
+dependencies = [
+    ('netCDF', '4.7.4'),
+    ('JasPer', '2.0.14'),
+]
+
+separate_build_dir = True
+
+configopts = "-DENABLE_NETCDF=ON -DENABLE_JPG=ON -DENABLE_PYTHON=OFF"
+
+sanity_check_paths = {
+    'files': ['bin/%s' % x for x in ['bufr_copy', 'bufr_dump', 'bufr_filter', 'bufr_ls',
+                                     'codes_count', 'codes_info', 'codes_split_file',
+                                     'grib_copy', 'grib_dump', 'grib_filter', 'grib_ls']],
+    'dirs': [],
+}
+
+moduleclass = 'tools'

intel-2020a/libdap-3.20.6-GCCcore-9.3.0.eb

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+easyblock = 'ConfigureMake'
+
+name = 'libdap'
+version = '3.20.6'
+
+homepage = 'https://www.opendap.org/software/libdap'
+description = """A C++ SDK which contains an implementation of DAP 2.0 and
+ DAP4.0. This includes both Client- and Server-side support classes."""
+
+toolchain = {'name': 'GCCcore', 'version': '9.3.0'}
+
+source_urls = ['https://www.opendap.org/pub/source/']
+sources = [SOURCE_TAR_GZ]
+checksums = ['35cc7f952d72de4936103e8a95c67ac8f9b855c9211fae73ad065331515cc54a']
+
+builddependencies = [
+    ('binutils', '2.34'),
+    ('Bison', '3.5.3'),
+    ('flex', '2.6.4'),
+]
+
+dependencies = [
+    ('cURL', '7.69.1'),
+    ('libxml2', '2.9.10'),
+    ('libtirpc', '1.2.6'),
+    ('PCRE', '8.44'),
+    ('util-linux', '2.35'),
+]
+
+configopts = 'TIRPC_LIBS="-ltirpc"'
+
+sanity_check_paths = {
+    'files': ['bin/getdap', 'bin/getdap4', 'bin/dap-config', 'lib/libdap.a', 'lib/libdap.%s' % SHLIB_EXT],
+    'dirs': ['include'],
+}
+
+moduleclass = 'lib'