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@@ -70,12 +70,27 @@ Finally, run `./utils/install_modulerc.sh`
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## Python2 packages
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-Fix `/opt/modules/all/GEOS/3.6.1-intel-2018.lua` by adding `setenv("GEOS_DIR", root)`
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+Fix `/opt/modules/all/GEOS/3.6.2-foss-2017b-Python-2.7.14.lua` by adding `setenv("GEOS_DIR", root)`
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```bash
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-module load NCL PROJ ; pip install geos netcdf4 cdo geoval cartopy iris matplotlib ipython pyproj scikit-image pillow pandas xarray joblib six gdal shapely rasterio geopandas pytest boto3 salem motionless progressbar2 fiona geopandas configobj https://github.com/matplotlib/basemap/archive/v1.1.0.tar.gz; module purge
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+module load GDAL/2.2.3-foss-2017b-Python-2.7.14 GEOS/3.6.2-foss-2017b-Python-2.7.14
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+pip install --upgrade pip
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+
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+pip install geos netcdf4 cdo geoval cartopy iris matplotlib ipython pyproj scikit-image pillow pandas xarray joblib six gdal shapely rasterio geopandas pytest boto3 salem motionless progressbar2 fiona geopandas configobj https://github.com/matplotlib/basemap/archive/v1.1.0.tar.gz
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+
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+module purge
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```
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+Fix `/opt/modules/all/Python/2.7.14-foss-2017b.lua` by adding:
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+
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+> if not isloaded("GDAL/2.2.3-foss-2017b-Python-2.7.14") then
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+> load("GDAL/2.2.3-foss-2017b-Python-2.7.14")
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+>end
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+>
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+>if not isloaded("GEOS/3.6.2-foss-2017b-Python-2.7.14") then
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+> load("GEOS/3.6.2-foss-2017b-Python-2.7.14")
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+>end
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+
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## Python3 issue
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Check if you have an issue with Python3:
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@@ -98,7 +113,11 @@ vimdiff /opt/software/Python/3.6.1-intel-2018/lib/python3.6/hashlib.py utils/has
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Fix `/opt/modules/all/GEOS/3.6.1-intel-2018-Python-3.6.1.lua` by adding `setenv("GEOS_DIR", root)`
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```bash
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-module load GDAL/2.2.0-intel-2018-Python-3.6.1 PROJ; pip install geos netcdf4 cdo geoval cartopy matplotlib ipython pyproj scikit-image pillow pandas xarray joblib six gdal shapely rasterio geopandas pytest boto3 salem motionless progressbar2 fiona geopandas configobj https://github.com/matplotlib/basemap/archive/v1.1.0.tar.gz; module purge
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+module load GDAL/2.2.0-intel-2018-Python-3.6.1 PROJ
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+
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+pip install geos netcdf4 cdo geoval cartopy matplotlib ipython pyproj scikit-image pillow pandas xarray joblib six gdal shapely rasterio geopandas pytest boto3 salem motionless progressbar2 fiona geopandas configobj https://github.com/matplotlib/basemap/archive/v1.1.0.tar.gz
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+
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+module purge
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```
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## Matlab 2013a
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