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+name = 'R'
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+version = '3.4.0'
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+
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+homepage = 'http://www.r-project.org/'
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+description = """R is a free software environment for statistical computing and graphics."""
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+
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+toolchain = {'name': 'intel', 'version': '2017.02'}
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+
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+sources = [SOURCE_TAR_GZ]
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+source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s']
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+
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+preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"'
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+configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=yes --enable-R-shlib"
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+# Actually use Tcl/Tk
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+configopts += ' --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh '
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+# Enable graphics capabilities for plotting.
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+configopts += " --with-cairo --with-libpng --with-jpeglib --with-libtiff"
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+# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below
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+configopts += " --with-recommended-packages=no"
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+
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+dependencies = [
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+ ('X11', '20170314'),
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+ ('Mesa', '17.0.2'),
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+ ('libGLU', '9.0.0'),
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+ ('cairo', '1.14.8'),
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+ ('libreadline', '7.0'),
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+ ('ncurses', '6.0'),
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+ ('bzip2', '1.0.6'),
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+ ('XZ', '5.2.3'),
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+ ('zlib', '1.2.11'),
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+ ('SQLite', '3.17.0'),
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+ ('PCRE', '8.40'),
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+ ('libpng', '1.6.29'), # for plotting in R
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+ ('libjpeg-turbo', '1.5.1'), # for plottting in R
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+ ('LibTIFF', '4.0.7'),
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+ #('Java', '1.8.0_121', '', True), # Java bindings are built if Java is found, might as well provide it
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+ ('Tcl', '8.6.6'), # for tcltk
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+ ('Tk', '8.6.6'), # for tcltk
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+ ('cURL', '7.53.1'), # for RCurl
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+ ('libxml2', '2.9.4'), # for XML
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+ ('PROJ', '4.9.3'), # for rgdal
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+ ('GMP', '6.1.2'), # for igraph
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+ ('NLopt', '2.4.2'), # for nloptr
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+ ('FFTW', '3.3.4'), # for fftw
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+ ('libsndfile', '1.0.28'), # for seewave
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+ ('JAGS', '4.2.0'), # for rjags
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+ ('HDF5', '1.8.18'),
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+ ('netCDF', '4.4.1.1'),
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+ ('netCDF-Fortran', '4.4.4'),
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+ ('GDAL', '2.2.0'),
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+ ('GEOS', '3.6.1'),
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+ # OS dependency should be preferred if the os version is more recent then this version,
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+ # it's nice to have an up to date openssl for security reasons
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+ # ('OpenSSL', '1.0.2h'),
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+]
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+
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+osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')]
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+
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+name_tmpl = '%(name)s_%(version)s.tar.gz'
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+ext_options = {
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+ 'source_urls': [
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+ 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive
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+ 'http://cran.r-project.org/src/contrib/', # current version of packages
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+ 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages
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+ ],
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+ 'source_tmpl': name_tmpl,
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+}
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+
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+# !! order of packages is important !!
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+# packages updated on May 11th 2017
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+exts_list = [
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+ # default libraries, only here to sanity check their presence
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+ 'base',
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+ 'compiler',
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+ 'datasets',
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+ 'graphics',
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+ 'grDevices',
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+ 'grid',
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+ 'methods',
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+ 'splines',
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+ 'stats',
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+ 'stats4',
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+ 'tools',
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+ 'utils',
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+ # non-standard libraries, should be specified with fixed versions!
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+ ('perm', '1.0-0.0', ext_options),
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+ ('Rmpi', '0.6-6', ext_options),
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+ ('abind', '1.4-5', ext_options),
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+ ('magic', '1.5-6', ext_options),
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+ ('geometry', '0.3-6', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])),
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+ ('bit', '1.1-12', ext_options),
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+ ('filehash', '2.4-1', ext_options),
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+ ('ff', '2.2-13', ext_options),
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+ ('bnlearn', '4.1.1', ext_options),
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+ ('bootstrap', '2017.2', ext_options),
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+ ('combinat', '0.0-8', ext_options),
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+ ('deal', '1.2-37', ext_options),
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+ ('fdrtool', '1.2.15', ext_options),
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+ ('formatR', '1.5', ext_options),
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+ ('gtools', '3.5.0', ext_options),
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+ ('gdata', '2.17.0', ext_options),
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+ ('GSA', '1.03', ext_options),
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+ ('highr', '0.6', ext_options),
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+ ('infotheo', '1.2.0', ext_options),
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+ ('lars', '1.2', ext_options),
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+ ('lazy', '1.2-15', ext_options),
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+ ('kernlab', '0.9-25', ext_options),
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+ ('mime', '0.5', ext_options),
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+ ('markdown', '0.8', ext_options),
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+ ('mlbench', '2.1-1', ext_options),
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+ ('NLP', '0.1-10', ext_options),
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+ ('mclust', '5.2.3', ext_options),
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+ ('RANN', '2.5', ext_options),
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+ ('rmeta', '2.16', ext_options),
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+ ('segmented', '0.5-1.4', ext_options),
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+ ('som', '0.3-5.1', ext_options),
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+ ('SuppDists', '1.1-9.4', ext_options),
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+ ('stabledist', '0.7-1', ext_options),
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+ ('survivalROC', '1.0.3', ext_options),
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+ ('pspline', '1.0-17', ext_options),
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+ ('timeDate', '3012.100', ext_options),
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+ ('longmemo', '1.0-0', ext_options),
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+ ('ADGofTest', '0.3', ext_options),
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+ ('ade4', '1.7-6', ext_options),
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+ ('AlgDesign', '1.1-7.3', ext_options),
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+ ('base64enc', '0.1-3', ext_options),
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+ ('BH', '1.62.0-1', ext_options),
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+ ('brew', '1.0-6', ext_options),
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+ ('Brobdingnag', '1.2-4', ext_options),
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+ ('corpcor', '1.6.9', ext_options),
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+ ('longitudinal', '1.1.12', ext_options),
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+ ('backports', '1.0.5', ext_options),
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+ ('checkmate', '1.8.2', ext_options),
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+ ('Rcpp', '0.12.10', ext_options),
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+ ('cubature', '1.3-8', ext_options),
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+ ('DEoptimR', '1.0-8', ext_options),
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+ ('digest', '0.6.12', ext_options),
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+ ('fastmatch', '1.1-0', ext_options),
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+ ('ffbase', '0.12.3', ext_options),
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+ ('iterators', '1.0.8', ext_options),
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+ ('maps', '3.1.1', ext_options),
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+ ('nnls', '1.4', ext_options),
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+ ('sendmailR', '1.2-1', ext_options),
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+ ('spam', '1.4-0', ext_options),
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+ ('subplex', '1.2-2', ext_options),
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+ ('stringi', '1.1.5', ext_options),
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+ ('magrittr', '1.5', ext_options),
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+ ('stringr', '1.2.0', ext_options),
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+ ('evaluate', '0.10', ext_options),
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+ ('logspline', '2.1.9', ext_options),
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+ ('ncbit', '2013.03.29', ext_options),
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+ ('permute', '0.9-4', ext_options),
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+ ('plotrix', '3.6-5', ext_options),
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+ ('randomForest', '4.6-12', ext_options),
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+ ('scatterplot3d', '0.3-40', ext_options),
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+ ('SparseM', '1.77', ext_options),
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+ ('tripack', '1.3-8', ext_options),
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+ ('irace', '2.3', ext_options),
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+ #('rJava', '0.9-8', ext_options),
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+ ('lattice', '0.20-35', ext_options),
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+ ('RColorBrewer', '1.1-2', ext_options),
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+ ('latticeExtra', '0.6-28', ext_options),
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+ ('Matrix', '1.2-10', ext_options),
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+ ('png', '0.1-7', ext_options),
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+ ('RUnit', '0.4.31', ext_options),
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+ ('RcppArmadillo', '0.7.800.2.0', ext_options),
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+ ('plyr', '1.8.4', ext_options),
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+ ('pROC', '1.9.1', ext_options),
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+ ('quadprog', '1.5-5', ext_options),
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+ ('BB', '2014.10-1', ext_options),
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+ ('BBmisc', '1.11', ext_options),
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+ ('fail', '1.3', ext_options),
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+ ('rlecuyer', '0.3-4', ext_options),
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+ ('snow', '0.4-2', ext_options),
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+ ('MASS', '7.3-47', ext_options),
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+ ('tree', '1.0-37', ext_options),
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+ ('pls', '2.6-0', ext_options),
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+ ('class', '7.3-14', ext_options),
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+ ('e1071', '1.6-8', ext_options),
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+ ('nnet', '7.3-12', ext_options),
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+ ('nlme', '3.1-131', ext_options),
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+ ('minqa', '1.2.4', ext_options),
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+ ('RcppEigen', '0.3.3.3.0', ext_options),
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+ ('RcppParallel', '4.3.20', ext_options),
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+ ('MatrixModels', '0.4-1', ext_options),
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+ ('quantreg', '5.33', ext_options),
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+ ('mgcv', '1.8-17', ext_options),
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+ ('colorspace', '1.3-2', ext_options),
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+ ('robustbase', '0.92-7', ext_options),
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+ ('sp', '1.2-4', ext_options),
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+ ('zoo', '1.8-0', ext_options),
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+ ('lmtest', '0.9-35', ext_options),
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+ ('vcd', '1.4-3', ext_options),
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+ ('snowfall', '1.84-6.1', ext_options),
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+ ('rpart', '4.1-11', ext_options),
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+ ('survival', '2.41-3', ext_options),
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+ ('mice', '2.30', ext_options),
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+ ('urca', '1.3-0', ext_options),
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+ ('fracdiff', '1.4-2', ext_options),
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+ ('logistf', '1.22', ext_options),
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+ ('akima', '0.6-2', ext_options),
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+ ('bitops', '1.0-6', ext_options),
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+ ('boot', '1.3-19', ext_options),
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+ ('mixtools', '1.1.0', ext_options),
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+ ('cluster', '2.0.6', ext_options),
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+ ('gclus', '1.3.1', ext_options),
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+ ('coda', '0.19-1', ext_options),
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+ ('codetools', '0.2-15', ext_options),
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+ ('foreach', '1.4.3', ext_options),
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+ ('doMC', '1.3.4', ext_options),
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+ ('DBI', '0.6-1', ext_options),
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+ ('foreign', '0.8-68', ext_options),
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+ ('gam', '1.14-4', ext_options),
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+ ('gamlss.data', '5.0-0', ext_options),
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+ ('gamlss.dist', '5.0-0', ext_options),
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+ ('hwriter', '1.3.2', ext_options),
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+ ('KernSmooth', '2.23-15', ext_options),
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+ ('xts', '0.9-7', ext_options),
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+ ('TTR', '0.23-1', ext_options),
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+ ('quantmod', '0.4-8', ext_options),
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+ ('mnormt', '1.5-5', ext_options),
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+ ('mvtnorm', '1.0-6', ext_options),
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+ ('pcaPP', '1.9-61', ext_options),
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+ ('numDeriv', '2016.8-1', ext_options),
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+ ('lava', '1.5', ext_options),
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+ ('prodlim', '1.6.1', ext_options),
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+ ('pscl', '1.4.9', ext_options),
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+ ('memoise', '1.1.0', ext_options),
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+ ('plogr', '0.1-1', ext_options),
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+ ('RSQLite', '1.1-2', ext_options),
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+ ('BatchJobs', '1.6', ext_options),
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+ ('sandwich', '2.3-4', ext_options),
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+ ('sfsmisc', '1.1-0', ext_options),
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+ ('spatial', '7.3-11', ext_options),
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+ ('VGAM', '1.0-3', ext_options),
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+ ('waveslim', '1.7.5', ext_options),
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+ ('xtable', '1.8-2', ext_options),
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+ ('profileModel', '0.5-9', ext_options),
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+ ('brglm', '0.5-9', ext_options),
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+ ('deSolve', '1.14', ext_options),
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+ ('tseriesChaos', '0.1-13', ext_options),
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+ ('tseries', '0.10-40', ext_options),
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+ ('fastICA', '1.2-0', ext_options),
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+ ('R.methodsS3', '1.7.1', ext_options),
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+ ('R.oo', '1.21.0', ext_options),
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+ ('cgdsr', '1.2.6', ext_options),
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+ ('R.utils', '2.5.0', ext_options),
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+ ('R.matlab', '3.6.1', ext_options),
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+ ('gbm', '2.1.3', ext_options),
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+ ('dichromat', '2.0-0', ext_options),
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+ ('Formula', '1.2-1', ext_options),
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+ ('acepack', '1.4.1', ext_options),
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+ ('reshape2', '1.4.2', ext_options),
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+ ('gtable', '0.2.0', ext_options),
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+ ('munsell', '0.4.3', ext_options),
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+ ('labeling', '0.3', ext_options),
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+ ('scales', '0.4.1', ext_options),
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+ ('proto', '1.0.0', ext_options),
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+ ('lazyeval', '0.2.0', ext_options),
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+ ('assertthat', '0.2.0', ext_options),
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+ ('tibble', '1.3.0', ext_options),
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+ ('ggplot2', '2.2.1', ext_options),
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+ ('gridExtra', '2.2.1', ext_options),
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+ ('chron', '2.3-50', ext_options),
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+ ('data.table', '1.10.4', ext_options),
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+ ('viridisLite', '0.2.0', ext_options),
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+ ('viridis', '0.4.0', ext_options),
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+ ('yaml', '2.1.14', ext_options),
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+ ('jsonlite', '1.4', ext_options),
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+ ('htmltools', '0.3.6', ext_options),
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+ ('htmlwidgets', '0.8', ext_options),
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+ ('knitr', '1.15.1', ext_options),
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+ ('htmlTable', '1.9', ext_options),
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+ ('Hmisc', '4.0-3', ext_options),
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+ ('fastcluster', '1.1.22', ext_options),
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+ ('registry', '0.3', ext_options),
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+ ('pkgmaker', '0.22', ext_options),
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+ ('rngtools', '1.2.4', ext_options),
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+ ('doParallel', '1.0.10', ext_options),
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+ ('gridBase', '0.4-7', ext_options),
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+ ('NMF', '0.20.6', ext_options),
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+ ('irlba', '2.1.2', ext_options),
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+ ('igraph', '1.0.1', ext_options),
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+ ('GeneNet', '1.2.13', ext_options),
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+ ('ape', '4.1', ext_options),
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+ ('RJSONIO', '1.3-0', ext_options),
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+ ('caTools', '1.17.1', ext_options),
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+ ('gplots', '3.0.1', ext_options),
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+ ('ROCR', '1.0-7', ext_options),
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+ ('httpuv', '1.3.3', ext_options),
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+ ('R6', '2.2.1', ext_options),
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+ ('rjson', '0.2.15', ext_options),
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+ ('sourcetools', '0.1.6', ext_options),
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+ ('shiny', '1.0.3', ext_options),
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+ ('seqinr', '3.3-6', ext_options),
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+ ('LearnBayes', '2.15', ext_options),
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+ ('deldir', '0.1-14', ext_options),
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+ ('gmodels', '2.16.2', ext_options),
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+ ('expm', '0.999-2', ext_options),
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+ ('spdep', '0.6-13', ext_options),
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+ ('dplyr', '0.5.0', ext_options),
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+ ('vegan', '2.4-3', ext_options),
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+ ('adegenet', '2.0.1', ext_options),
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+ ('prettyunits', '1.0.2', ext_options),
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+ ('progress', '1.1.2', ext_options),
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+ ('rncl', '0.8.2', ext_options),
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+ ('XML', '3.98-1.7', ext_options),
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+ ('crayon', '1.3.2', ext_options),
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+ ('praise', '1.0.0', ext_options),
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+ ('testthat', '1.0.2', ext_options),
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+ ('rprojroot', '1.2', ext_options),
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|
|
+ ('rmarkdown', '1.5', ext_options),
|
|
|
+ ('curl', '2.6', ext_options),
|
|
|
+ ('openssl', '0.9.6', ext_options),
|
|
|
+ ('httr', '1.2.1', ext_options),
|
|
|
+ ('reshape', '0.8.6', ext_options),
|
|
|
+ ('xml2', '1.1.1', ext_options),
|
|
|
+ ('bold', '0.4.0', ext_options),
|
|
|
+ ('triebeard', '0.3.0', ext_options),
|
|
|
+ ('urltools', '1.6.0', ext_options),
|
|
|
+ ('httpcode', '0.2.0', ext_options),
|
|
|
+ ('crul', '0.3.4', ext_options),
|
|
|
+ ('rredlist', '0.3.0', ext_options),
|
|
|
+ ('rentrez', '1.0.4', ext_options),
|
|
|
+ ('rotl', '3.0.3', ext_options),
|
|
|
+ ('solrium', '0.4.0', ext_options),
|
|
|
+ ('ritis', '0.5.4', ext_options),
|
|
|
+ ('worrms', '0.1.0', ext_options),
|
|
|
+ ('natserv', '0.1.4', ext_options),
|
|
|
+ ('taxize', '0.8.4', ext_options),
|
|
|
+ ('tidyr', '0.6.2', ext_options),
|
|
|
+ ('uuid', '0.1-2', ext_options),
|
|
|
+ ('RNeXML', '2.0.7', ext_options),
|
|
|
+ ('phylobase', '0.8.4', ext_options),
|
|
|
+ ('adephylo', '1.1-10', ext_options),
|
|
|
+ ('animation', '2.5', ext_options),
|
|
|
+ ('bigmemory.sri', '0.1.3', ext_options),
|
|
|
+ ('bigmemory', '4.5.19', dict(ext_options.items() + [('patches', ['bigmemory-4.5.19_icpc-wd308.patch'])])),
|
|
|
+ ('calibrate', '1.7.2', ext_options),
|
|
|
+ ('clusterGeneration', '1.3.4', ext_options),
|
|
|
+ ('raster', '2.5-8', ext_options),
|
|
|
+ ('dismo', '1.1-4', ext_options),
|
|
|
+ ('extrafontdb', '1.0', ext_options),
|
|
|
+ ('Rttf2pt1', '1.3.4', ext_options),
|
|
|
+ ('extrafont', '0.17', ext_options),
|
|
|
+ ('fields', '8.10', ext_options),
|
|
|
+ ('shapefiles', '0.7', ext_options),
|
|
|
+ ('fossil', '0.3.7', ext_options),
|
|
|
+ ('geiger', '2.0.6', ext_options),
|
|
|
+ ('glmnet', '2.0-10', ext_options),
|
|
|
+ ('rgl', '0.98.1', ext_options),
|
|
|
+ ('labdsv', '1.8-0', ext_options),
|
|
|
+ ('stabs', '0.6-2', ext_options),
|
|
|
+ ('modeltools', '0.2-21', ext_options),
|
|
|
+ ('strucchange', '1.5-1', ext_options),
|
|
|
+ ('TH.data', '1.0-8', ext_options),
|
|
|
+ ('multcomp', '1.4-6', ext_options),
|
|
|
+ ('coin', '1.1-3', ext_options),
|
|
|
+ ('party', '1.2-3', ext_options),
|
|
|
+ ('mboost', '2.8-0', ext_options),
|
|
|
+ ('msm', '1.6.4', ext_options),
|
|
|
+ ('nor1mix', '1.2-2', ext_options),
|
|
|
+ ('np', '0.60-3', ext_options),
|
|
|
+ ('polynom', '1.3-9', ext_options),
|
|
|
+ ('polspline', '1.1.12', ext_options),
|
|
|
+ ('rms', '5.1-1', ext_options),
|
|
|
+ #('RWekajars', '3.9.1-3', ext_options),
|
|
|
+ #('RWeka', '0.4-34', ext_options),
|
|
|
+ ('slam', '0.1-40', ext_options),
|
|
|
+ ('tm', '0.7-1', ext_options),
|
|
|
+ ('TraMineR', '1.8-13', ext_options),
|
|
|
+ ('chemometrics', '1.4.2', ext_options),
|
|
|
+ ('FNN', '1.1', ext_options),
|
|
|
+ ('ipred', '0.9-6', ext_options),
|
|
|
+ ('statmod', '1.4.29', ext_options),
|
|
|
+ ('miscTools', '0.6-22', ext_options),
|
|
|
+ ('maxLik', '1.3-4', ext_options),
|
|
|
+ ('mlogit', '0.2-4', ext_options),
|
|
|
+ ('getopt', '1.20.0', ext_options),
|
|
|
+ ('gsalib', '2.1', ext_options),
|
|
|
+ ('optparse', '1.3.2', ext_options),
|
|
|
+ ('klaR', '0.6-12', ext_options),
|
|
|
+ ('neuRosim', '0.2-12', ext_options),
|
|
|
+ ('locfit', '1.5-9.1', ext_options),
|
|
|
+ ('GGally', '1.3.0', ext_options),
|
|
|
+ ('beanplot', '1.2', ext_options),
|
|
|
+ ('clValid', '0.6-6', ext_options),
|
|
|
+ ('matrixStats', '0.52.2', ext_options),
|
|
|
+ ('DiscriMiner', '0.1-29', ext_options),
|
|
|
+ ('ellipse', '0.3-8', ext_options),
|
|
|
+ ('leaps', '3.0', ext_options),
|
|
|
+ ('nloptr', '1.0.4', ext_options),
|
|
|
+ ('lme4', '1.1-13', ext_options),
|
|
|
+ ('pbkrtest', '0.4-7', ext_options),
|
|
|
+ ('car', '2.1-4', ext_options),
|
|
|
+ ('flashClust', '1.01-2', ext_options),
|
|
|
+ ('FactoMineR', '1.35', ext_options),
|
|
|
+ ('flexclust', '1.3-4', ext_options),
|
|
|
+ ('flexmix', '2.3-14', ext_options),
|
|
|
+ ('prabclus', '2.2-6', ext_options),
|
|
|
+ ('diptest', '0.75-7', ext_options),
|
|
|
+ ('trimcluster', '0.1-2', ext_options),
|
|
|
+ ('fpc', '2.1-10', ext_options),
|
|
|
+ ('BiasedUrn', '1.07', ext_options),
|
|
|
+ ('TeachingDemos', '2.10', ext_options),
|
|
|
+ ('kohonen', '3.0.2', dict(ext_options.items() + [('patches', ['kohonen-3.0.2_icpc-wd308.patch'])])),
|
|
|
+ ('base64', '2.0', ext_options),
|
|
|
+ ('doRNG', '1.6.6', ext_options),
|
|
|
+ ('nleqslv', '3.2', ext_options),
|
|
|
+ ('Deriv', '3.8.0', ext_options),
|
|
|
+ ('RGCCA', '2.1.2', ext_options),
|
|
|
+ ('pheatmap', '1.0.8', ext_options),
|
|
|
+ ('openxlsx', '4.0.17', ext_options),
|
|
|
+ ('pvclust', '2.0-0', ext_options),
|
|
|
+ ('RCircos', '1.2.0', ext_options),
|
|
|
+ ('lambda.r', '1.1.9', ext_options),
|
|
|
+ ('futile.options', '1.0.0', ext_options),
|
|
|
+ ('futile.logger', '1.4.3', ext_options),
|
|
|
+ ('VennDiagram', '1.6.17', ext_options),
|
|
|
+ #('xlsxjars', '0.6.1', ext_options),
|
|
|
+ #('xlsx', '0.5.7', ext_options),
|
|
|
+ ('forecast', '8.0', dict(ext_options.items() + [('patches', ['forecast-6.1_icpc-wd308.patch'])])),
|
|
|
+ ('fma', '2.3', ext_options),
|
|
|
+ ('expsmooth', '2.3', ext_options),
|
|
|
+ ('fpp', '0.5', ext_options),
|
|
|
+ ('maptools', '0.9-2', ext_options),
|
|
|
+ ('tensor', '1.5', ext_options),
|
|
|
+ ('polyclip', '1.6-1', ext_options),
|
|
|
+ ('goftest', '1.1-1', ext_options),
|
|
|
+ ('spatstat.utils', '1.6-0', ext_options),
|
|
|
+ ('spatstat', '1.51-0', ext_options),
|
|
|
+ ('rgdal', '1.2-7', ext_options),
|
|
|
+ ('gdalUtils', '2.0.1.7', ext_options),
|
|
|
+ ('pracma', '2.0.4', ext_options),
|
|
|
+ ('RCurl', '1.95-4.8', ext_options),
|
|
|
+ ('bio3d', '2.3-1', ext_options),
|
|
|
+ ('AUC', '0.3.0', ext_options),
|
|
|
+ ('interpretR', '0.2.4', ext_options),
|
|
|
+ ('cvAUC', '1.1.0', ext_options),
|
|
|
+ ('SuperLearner', '2.0-21', ext_options),
|
|
|
+ ('lpSolve', '5.6.13', ext_options),
|
|
|
+ ('mediation', '4.4.5', ext_options),
|
|
|
+ ('ModelMetrics', '1.1.0', ext_options),
|
|
|
+ ('caret', '6.0-76', ext_options),
|
|
|
+ ('adabag', '4.1', ext_options),
|
|
|
+ ('parallelMap', '1.3', ext_options),
|
|
|
+ ('ParamHelpers', '1.10', ext_options),
|
|
|
+ ('ggvis', '0.4.3', ext_options),
|
|
|
+ ('mlr', '2.11', ext_options),
|
|
|
+ ('unbalanced', '2.0', ext_options),
|
|
|
+ ('RSNNS', '0.4-9', ext_options),
|
|
|
+ ('abc.data', '1.0', ext_options),
|
|
|
+ ('abc', '2.1', ext_options),
|
|
|
+ ('lhs', '0.14', ext_options),
|
|
|
+ ('tensorA', '0.36', ext_options),
|
|
|
+ ('EasyABC', '1.5', ext_options),
|
|
|
+ ('shape', '1.4.2', ext_options),
|
|
|
+ ('whisker', '0.3-2', ext_options),
|
|
|
+ ('rstudioapi', '0.6', ext_options),
|
|
|
+ ('commonmark', '1.2', ext_options),
|
|
|
+ ('desc', '1.1.0', ext_options),
|
|
|
+ ('roxygen2', '6.0.1', ext_options),
|
|
|
+ ('git2r', '0.18.0', ext_options),
|
|
|
+ ('rversions', '1.0.3', ext_options),
|
|
|
+ ('withr', '1.0.2', ext_options),
|
|
|
+ ('devtools', '1.13.0', ext_options),
|
|
|
+ ('Rook', '1.1-1', ext_options),
|
|
|
+ ('Cairo', '1.5-9', dict(ext_options.items() + [('patches', ['Cairo-1.5-9.patch'])])),
|
|
|
+ ('RMTstat', '0.3', ext_options),
|
|
|
+ ('Lmoments', '1.2-3', ext_options),
|
|
|
+ ('distillery', '1.0-2', ext_options),
|
|
|
+ ('extRemes', '2.0-8', ext_options),
|
|
|
+ ('pixmap', '0.4-11', ext_options),
|
|
|
+ ('tkrplot', '0.0-23', ext_options),
|
|
|
+ ('misc3d', '0.8-4', ext_options),
|
|
|
+ ('multicool', '0.1-10', dict(ext_options.items() + [('patches', ['multicool-0.1-10_icpc-wd308.patch'])])),
|
|
|
+ ('ks', '1.10.6', ext_options),
|
|
|
+ ('logcondens', '2.1.5', ext_options),
|
|
|
+ ('Iso', '0.0-17', ext_options),
|
|
|
+ ('penalized', '0.9-50', ext_options),
|
|
|
+ ('clusterRepro', '0.5-1.1', ext_options),
|
|
|
+ ('randomForestSRC', '2.4.2', ext_options),
|
|
|
+ ('sm', '2.2-5.4', ext_options),
|
|
|
+ ('psych', '1.7.5', ext_options),
|
|
|
+ ('pbivnorm', '0.6.0', ext_options),
|
|
|
+ ('lavaan', '0.5-23.1097', ext_options),
|
|
|
+ ('matrixcalc', '1.0-3', ext_options),
|
|
|
+ ('arm', '1.9-3', ext_options),
|
|
|
+ ('mi', '1.0', ext_options),
|
|
|
+ ('visNetwork', '1.0.3', ext_options),
|
|
|
+ ('rgexf', '0.15.3', ext_options),
|
|
|
+ ('influenceR', '0.1.0', ext_options),
|
|
|
+ ('DiagrammeR', '0.9.0', ext_options),
|
|
|
+ ('sem', '3.1-9', ext_options),
|
|
|
+ ('jpeg', '0.1-8', ext_options),
|
|
|
+ ('network', '1.13.0', ext_options),
|
|
|
+ ('statnet.common', '3.3.0', ext_options),
|
|
|
+ ('sna', '2.4', ext_options),
|
|
|
+ ('glasso', '1.8', dict(ext_options.items() + [('patches', [('glasso-1.8-ifort-no-fixed.patch', 1)])])),
|
|
|
+ ('huge', '1.2.7', ext_options),
|
|
|
+ ('d3Network', '0.5.2.1', ext_options),
|
|
|
+ ('ggm', '2.3', ext_options),
|
|
|
+ ('qgraph', '1.4.3', ext_options),
|
|
|
+ ('diveRsity', '1.9.90', ext_options),
|
|
|
+ ('doSNOW', '1.0.14', ext_options),
|
|
|
+ ('phangorn', '2.2.0', ext_options),
|
|
|
+ ('geepack', '1.2-1', ext_options),
|
|
|
+ ('lubridate', '1.6.0', ext_options),
|
|
|
+ ('biom', '0.3.12', ext_options),
|
|
|
+ ('pim', '2.0.1', ext_options),
|
|
|
+ ('minpack.lm', '1.2-1', ext_options),
|
|
|
+ ('pdist', '1.2', ext_options),
|
|
|
+ ('dummies', '1.5.6', ext_options),
|
|
|
+ ('regtools', '1.0.1', ext_options),
|
|
|
+ ('partools', '1.1.6', ext_options),
|
|
|
+ #('RPostgreSQL', '0.4-1', ext_options),
|
|
|
+ #('RMySQL', '0.10.11', ext_options),
|
|
|
+ ('gsubfn', '0.6-6', ext_options),
|
|
|
+ ('sqldf', '0.4-10', ext_options),
|
|
|
+ ('alr3', '2.0.5', ext_options),
|
|
|
+ ('bdsmatrix', '1.3-2', ext_options),
|
|
|
+ ('sets', '1.0-17', ext_options),
|
|
|
+ ('psychotools', '0.4-2', ext_options),
|
|
|
+ ('relations', '0.6-6', ext_options),
|
|
|
+ ('benchmark', '0.3-6', ext_options),
|
|
|
+ ('Bhat', '0.9-10', ext_options),
|
|
|
+ ('biglm', '0.9-1', ext_options),
|
|
|
+ ('Bolstad', '0.2-34', ext_options),
|
|
|
+ ('Bolstad2', '1.0-28', ext_options),
|
|
|
+ ('BradleyTerry2', '1.0-6', ext_options),
|
|
|
+ ('catdata', '1.2.1', ext_options),
|
|
|
+ ('compare', '0.2-6', ext_options),
|
|
|
+ ('coxme', '2.2-5', ext_options),
|
|
|
+ ('DAAG', '1.22', ext_options),
|
|
|
+ ('degreenet', '1.3-1', ext_options),
|
|
|
+ ('doMPI', '0.2.1', ext_options),
|
|
|
+ ('elasticnet', '1.1', ext_options),
|
|
|
+ ('trust', '0.1-7', ext_options),
|
|
|
+ ('ergm', '3.7.1', ext_options),
|
|
|
+ ('ergm.count', '3.2.2', ext_options),
|
|
|
+ ('networkDynamic', '0.9.0', ext_options),
|
|
|
+ ('tergm', '3.4.0', ext_options),
|
|
|
+ ('statnet', '2016.9', ext_options),
|
|
|
+ ('EpiModel', '1.3.0', ext_options),
|
|
|
+ ('fda', '2.4.4', ext_options),
|
|
|
+ ('fftw', '1.0-3', ext_options),
|
|
|
+ ('fftwtools', '0.9-8', ext_options),
|
|
|
+ ('fit.models', '0.5-14', ext_options),
|
|
|
+ ('fts', '0.9.9', ext_options),
|
|
|
+ ('gap', '1.1-17', ext_options),
|
|
|
+ ('glmpath', '0.97', ext_options),
|
|
|
+ ('gmm', '1.5-2', ext_options),
|
|
|
+ ('hapassoc', '1.2-8', ext_options),
|
|
|
+ ('HaploSim', '1.8.4', ext_options),
|
|
|
+ ('haplo.stats', '1.7.7', ext_options),
|
|
|
+ ('hexbin', '1.27.1', ext_options),
|
|
|
+ ('igraphdata', '1.0.1', ext_options),
|
|
|
+ ('repr', '0.12.0', ext_options),
|
|
|
+ ('IRdisplay', '0.4.4', ext_options),
|
|
|
+ ('itertools', '0.1-3', ext_options),
|
|
|
+ ('its', '1.1.8', ext_options),
|
|
|
+ ('kin.cohort', '0.7', ext_options),
|
|
|
+ ('kinship2', '1.6.4', ext_options),
|
|
|
+ ('lasso2', '1.2-19', ext_options),
|
|
|
+ ('latentnet', '2.7.1', ext_options),
|
|
|
+ ('rex', '1.1.1', ext_options),
|
|
|
+ ('stringdist', '0.9.4.4', ext_options),
|
|
|
+ ('lintr', '1.0.0', ext_options),
|
|
|
+ ('LogicReg', '1.5.9', ext_options),
|
|
|
+ ('lokern', '1.1-8', ext_options),
|
|
|
+ ('lpridge', '1.0-7', ext_options),
|
|
|
+ ('mapdata', '2.2-6', ext_options),
|
|
|
+ ('mapproj', '1.2-4', ext_options),
|
|
|
+ ('MCMCglmm', '2.24', ext_options),
|
|
|
+ ('timereg', '1.9.0', ext_options),
|
|
|
+ ('mets', '1.2.2', ext_options),
|
|
|
+ ('mondate', '0.10.01.02', ext_options),
|
|
|
+ ('MPV', '1.38', ext_options),
|
|
|
+ ('ncdf4', '1.16', ext_options),
|
|
|
+ ('ndtv', '0.10.0', ext_options),
|
|
|
+ ('networksis', '2.1-3', ext_options),
|
|
|
+ ('nws', '1.7.0.1', ext_options),
|
|
|
+ ('PBSddesolve', '1.12.2', ext_options),
|
|
|
+ ('pedigree', '1.4', ext_options),
|
|
|
+ ('pedigreemm', '0.3-3', ext_options),
|
|
|
+ ('PolynomF', '0.94', ext_options),
|
|
|
+ ('qtl', '1.40-8', ext_options),
|
|
|
+ ('R2WinBUGS', '2.1-21', ext_options),
|
|
|
+ ('rjags', '4-6', ext_options),
|
|
|
+ ('R2jags', '0.5-7', ext_options),
|
|
|
+ ('regress', '1.3-15', ext_options),
|
|
|
+ ('relevent', '1.0-4', ext_options),
|
|
|
+ #('Rglpk', '0.6-2', ext_options),
|
|
|
+ ('Rhpc', '0.15-244', ext_options),
|
|
|
+ ('fasttime', '1.0-2', ext_options),
|
|
|
+ ('Rlabkey', '2.1.134', ext_options),
|
|
|
+ #('RODBC', '1.3-15', ext_options),
|
|
|
+ ('rootSolve', '1.7', ext_options),
|
|
|
+ #('rpanel', '1.1-3', ext_options),
|
|
|
+ ('rrcov', '1.4-3', ext_options),
|
|
|
+ ('RSclient', '0.7-3', ext_options),
|
|
|
+ ('Rserve', '1.7-3', ext_options),
|
|
|
+ #('rzmq', '0.9.1', ext_options),
|
|
|
+ ('survey', '3.31-5', ext_options),
|
|
|
+ ('tables', '0.8', ext_options),
|
|
|
+ ('tiff', '0.1-5', ext_options),
|
|
|
+ ('timeSeries', '3022.101.2', ext_options),
|
|
|
+ ('tmvtnorm', '1.4-10', ext_options),
|
|
|
+ ('vioplot', '0.2', ext_options),
|
|
|
+ ('wavethresh', '4.6.8', ext_options),
|
|
|
+ ('hms', '0.3', ext_options),
|
|
|
+ ('readr', '1.1.0', ext_options),
|
|
|
+ ('rappdirs', '0.3.1', ext_options),
|
|
|
+ ('config', '0.2', ext_options),
|
|
|
+ ('sparklyr', '0.5.3', ext_options),
|
|
|
+ ('REDCapR', '0.9.7', ext_options),
|
|
|
+ ('synapseClient', '1.13-4', ext_options),
|
|
|
+ ('GWASExactHW', '1.01', ext_options),
|
|
|
+ ('StanHeaders', '2.15.0-1', ext_options),
|
|
|
+ ('inline', '0.3.14', ext_options),
|
|
|
+ ('rstan', '2.15.1', ext_options),
|
|
|
+ ('ascat', '2.4.3', {
|
|
|
+ 'source_urls': ['https://github.com/Crick-CancerGenomics/ascat/releases/download/v%(version)s'],
|
|
|
+ 'source_tmpl': 'ASCAT_%(version)s.tar.gz'
|
|
|
+ }),
|
|
|
+ ('rslurm', '0.3.3', ext_options),
|
|
|
+ ('CompQuadForm', '1.4.3', ext_options),
|
|
|
+ ('diagram', '1.6.3', ext_options),
|
|
|
+ ('FME', '1.3.5', ext_options),
|
|
|
+ ('bmp', '0.2', ext_options),
|
|
|
+ ('readbitmap', '0.1-4', ext_options),
|
|
|
+ ('purrr', '0.2.2', ext_options),
|
|
|
+ ('downloader', '0.4', ext_options),
|
|
|
+ ('imager', '0.40.2', dict(ext_options.items() + [('patches', ['imager-0.40.2_icpc-wd308.patch'])])),
|
|
|
+ ('pracma', '2.0.4', ext_options),
|
|
|
+ ('signal', '0.7-6', ext_options),
|
|
|
+ ('tuneR', '1.3.2', ext_options),
|
|
|
+ ('pastecs', '1.3-18', ext_options),
|
|
|
+ ('audio', '0.1-5', ext_options),
|
|
|
+ ('fftw', '1.0-4', ext_options),
|
|
|
+ ('seewave', '2.0.5', ext_options),
|
|
|
+ ('gsw', '1.0-3', ext_options),
|
|
|
+ ('oce', '0.9-21', ext_options),
|
|
|
+ ('ineq', '0.2-13', ext_options),
|
|
|
+ ('soundecology', '1.3.2', ext_options),
|
|
|
+ ('memuse', '3.0-1', ext_options),
|
|
|
+ ('pinfsc50', '1.1.0', ext_options),
|
|
|
+ ('vcfR', '1.5.0', ext_options),
|
|
|
+ ('glmmML', '1.0.2', ext_options),
|
|
|
+ ('ucminf', '1.1-4', ext_options),
|
|
|
+ ('ordinal', '2015.6-28', ext_options),
|
|
|
+]
|
|
|
+
|
|
|
+moduleclass = 'lang'
|