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- Lmod has detected the following error: The following module(s) are unknown:
- "netCDF-Fortran/4.2-foss-2015a"
- Please check the spelling or version number. Also try "module spider ..."
- It is also possible your cache file is out-of-date; it may help to try:
- $ module --ignore-cache load "netCDF-Fortran/4.2-foss-2015a"
- Also make sure that all modulefiles written in TCL start with the string
- #%Module
- + set -o nounset
- + set -o errexit
- + yearb=1983
- + yeare=1983
- + grid=eORCA1
- + nbsmooth=2
- + sosiedir=/gpfs/home/acad/ucl-elic/adelhass/tools/sosie-master/bin
- + mask=/gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/mask-eORCA1.nc
- + sourcedir=/gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/OSI-SAF-450
- + ioutdir=/gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/OSI-SAF-450-on-nemo
- + scratchdir=/gpfs/home/acad/ucl-elic/adelhass/scratch_limhr/sosie
- + weightdir=
- + tmpdir=/gpfs/home/acad/ucl-elic/adelhass/scratch_limhr/sosie/TMP_18239
- + echo 'TMPDIR IS >>>>>> /gpfs/home/acad/ucl-elic/adelhass/scratch_limhr/sosie/TMP_18239 <<<<<<<'
- + mkdir -p /gpfs/home/acad/ucl-elic/adelhass/scratch_limhr/sosie/TMP_18239
- + cp namelist_OSISAF-conc namelist_OSISAF-error namelist_OSISAF-mask /gpfs/home/acad/ucl-elic/adelhass/scratch_limhr/sosie/TMP_18239
- + [[ -f /sosie_mapping_OSISAF-nh-eORCA1.nc ]]
- + [[ -f /sosie_mapping_OSISAF-sh-eORCA1.nc ]]
- + cd /gpfs/home/acad/ucl-elic/adelhass/scratch_limhr/sosie/TMP_18239
- + '[' '!' -f /gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/mask-eORCA1.nc ']'
- + ln -sf /gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/mask-eORCA1.nc mask_out.nc
- + ln -sf /gpfs/home/acad/ucl-elic/adelhass/tools/sosie-master/bin/sosie3.x .
- ++ seq 1983 1983
- + for year in `seq ${yearb} ${yeare}`
- + echo 1983
- + rm -f listfiles.txt
- + ls /gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/OSI-SAF-450/ice_conc_nh_ease2-250_cdr-v2p0_198312311200.nc
- ++ cat list_files.txt
- + for file in `cat list_files.txt`
- ++ sed -e s/ice_conc_nh_ease2-250_cdr-v2p0_// -e s/1200.nc//
- ++ basename /gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/OSI-SAF-450/ice_conc_nh_ease2-250_cdr-v2p0_198312311200.nc
- + tag=19831231
- + echo 19831231
- ++ wc -l
- ++ ls /gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/OSI-SAF-450/ice_conc_nh_ease2-250_cdr-v2p0_198312311200.nc /gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/OSI-SAF-450/ice_conc_sh_ease2-250_cdr-v2p0_198312311200.nc
- + nfile=2
- + [[ 2 == 2 ]]
- + echo 'Two files were found for the time stamp 19831231!'
- + for hemi in nh sh
- + filein=/gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/OSI-SAF-450/ice_conc_nh_ease2-250_cdr-v2p0_198312311200.nc
- + cp -f /gpfs/home/acad/ucl-elic/adelhass/git/EnKF/conversion_uf/OSI-SAF-450/ice_conc_nh_ease2-250_cdr-v2p0_198312311200.nc data_in_nh-19831231.nc
- + cdo chname,status_flag,mask -eqc,0 -selvar,status_flag data_in_nh-19831231.nc mask_in_nh-19831231.nc
- + [[ 2 == 0 ]]
- + mv data_in_nh-19831231.nc data_in_smooth0_nh-19831231.nc
- ++ seq 1 2
- + for jsmooth in `seq 1 $nbsmooth`
- + cdo smooth9 data_in_smooth0_nh-19831231.nc data_in_smooth1_nh-19831231.nc
- + for jsmooth in `seq 1 $nbsmooth`
- + cdo smooth9 data_in_smooth1_nh-19831231.nc data_in_smooth2_nh-19831231.nc
- + mv data_in_smooth2_nh-19831231.nc data_in_smooth_nh-19831231.nc
- + sed -e s/TTAARRGGEETT/eORCA1/ -e s/HHEEMMII/nh/ -e s/TTAAGG/19831231/ namelist_OSISAF-mask
- + ./sosie3.x
- Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
- Backtrace for this error:
- #0 0x7f0014304b1f in ???
- #1 0x44c71f in __io_ezcdf_MOD_getvar_attributes
- at src/io_ezcdf.f90:304
- /var/spool/slurmd/job4045043/slurm_script: line 111: 2196976 Segmentation fault (core dumped) ./sosie3.x
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