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@@ -1,41 +1,36 @@
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November 2016
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Updated November 2017
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+Updated March 2019 at UCL
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François Massonnet
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-francois.massonnet@bsc.es/uclouvain.be
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+francois.massonnet@uclouvain.be/bsc.es
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-Everything available to set up the ensemble Kalman filter for NEMO and EC-Earth
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+Everything available to set up the Ensemble Kalman filter (EnKF) for NEMO and EC-Earth
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-|-----------------------------------------------------------------------|
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-|ALL COMPILATIONS AND CREATION OF BINARY FILES SHOULD BE DONE ON THE HPC|
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-|-----------------------------------------------------------------------|
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-1/ Go to the HPC
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+#### **!!! ALL COMPILATIONS AND CREATION OF BINARY FILES SHOULD BE DONE ON THE HPC !!!**
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+####
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-2/ Clone the git repository (some HPCs don't allow communication with the web, in this case clone locally and rsync the git project to HPC)
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+1. **Go to the HPC**
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->> git clone https://earth.bsc.es/gitlab/fmassonnet/EnKF-assimilation.git
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+2. **Clone the git repository** (some HPCs don't allow communication with the web, in this case clone locally and rsync the git project to HPC)
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-3/ Check-out the appropriate branch
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->> git checkout develop-${HPC}
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-where ${HPC} is for instance mn4
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+```
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+git clone https://gogs.elic.ucl.ac.be/fmasson/EnKF.git
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+```
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-The file enkf_modules_to_load.txt is a set of modules to be load at compilation and execution to make sure that all libraries are found
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+3. **Compile the EnKF code**
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-
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-A/ Compilation of the EnKF code
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--------------------------------
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The folder EnKF-MPI-TOPAZ is a modified copy of the source code found at NERSC (http://enkf.nersc.no/Code/NERSC_implementation/V2/)
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-It has been modified as to work with NEMO and LIM, by F. Massonnet and C. König Beatty.
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-
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-___THE CODE SHOULD NOT BE MODIFIED___
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-
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+It has been modified as to work with NEMO and LIM, by F. Massonnet and C. König Beatty. The code itself should not be modified, unless there are good reasons to do so.
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->> cd EnKF-MPI-TOPAZ
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->> make clean
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->> source ../enkf_modules_to_load.txt
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->> make
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+```
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+cd EnKF-MPI-TOPAZ
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+make clean
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+configure_ecearth
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+make
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+```
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An executable EnKF should be produced. Try to run it to see if you get the following information message:
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