Coral/templates/scripts/rebuild.sh

#!/bin/bash
# Submission script for Zenobe
#PBS -N ECEC_post
#PBS -r y
#PBS -W group_list=ecearth
#
#PBS -l walltime=23:59:00
#PBS -l select=1:ncpus=5:ompthreads=5:vmem=20480mb
#PBS -l pvmem=4096mb
#
#PBS -M francois.klein@uclouvain.be
#PBS -m abe

exec > ${PBS_O_WORKDIR}/${PBS_JOBNAME}.${PBS_JOBID}.log
echo "------------------ Work dir --------------------"
cd ${PBS_O_WORKDIR} && echo ${PBS_O_WORKDIR}
echo "------------------ Job Info --------------------"
echo "jobid : $PBS_JOBID"
echo "jobname : $PBS_JOBNAME"
echo "job type : $PBS_ENVIRONMENT"
echo "submit dir : $PBS_O_WORKDIR"
echo "queue : $PBS_O_QUEUE"
echo "user : $PBS_O_LOGNAME"
echo "threads : $OMP_NUM_THREADS"

set -ue
set +x
# =============================================================================
# *** BEGIN User configuration
# =============================================================================

# -----------------------------------------------------------------------------
# *** General configuration
# -----------------------------------------------------------------------------
# Experiment name (exactly 4 letters!)
exp_name=ECEC

# Directories
start_dir=${PBS_O_WORKDIR}
#start_dir=${PWD}

# Architecture
build_arch=ecconf
nem_numproc=96

# -----------------------------------------------------------------------------
# *** Read platform dependent configuration
# -----------------------------------------------------------------------------
. ${PBS_O_WORKDIR}/ecconf.cfg

configure

# -----------------------------------------------------------------------------
# *** Post NEMO
# -----------------------------------------------------------------------------

rebuild_nemo=${ecearth_src_dir}/util/rebuild_nemo/rebuild_nemo
path=${run_dir}/output/nemo

for dir in ${path}/*
do
  cd ${dir}
  count=0
  for i in $(echo `ls | head -n 1` | tr "_" "\n")
  do
    count=$(( $count + 1 ))
    [[ $count -eq 3 ]] && expdate=${i}
    [[ $count -eq 4 ]] && expdate=${expdate}_${i}
  done
  basename="${exp_name}_1m_${expdate}_"
  $rebuild_nemo -t 5 ${basename}grid_T ${nem_numproc}
  $rebuild_nemo -t 5 ${basename}grid_U ${nem_numproc}

  $rebuild_nemo -t 5 ${basename}grid_V ${nem_numproc}
  $rebuild_nemo -t 5 ${basename}grid_W ${nem_numproc}
  #$rebuild_nemo -t 5 ${basename}icemoa ${nem_numproc}
  #$rebuild_nemo -t 5 ${basename}icemod ${nem_numproc}

  mv ${basename}??????.nc ..
  cd ..
done

if [ ! -d ${stdout_dir}/nemo ]
        then
                                                                                                                                                                                                               mkdir -p ${stdout_dir}/nemo
                                                                                                                                                                                                                  fi
                                                                                                                                                                                                                     cd ${path}
                                                                                                                                                                                                                        mv -f *.nc ${stdout_dir}/nemo

# -----------------------------------------------------------------------------