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@@ -193,7 +193,7 @@ do
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echo "special_restart_from: $special_restart_from"
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### NEMO
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- indir="${run_dir}/../../${special_restart_from}/archive/restart/nemo/$(printf %03d $((special_restart_leg)))"
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+ indir="${run_dir}/../../${special_restart_from}/archive/restart/$(printf %03d $((special_restart_leg)))"
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cd ${indir}
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for f in *.nc; do
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nf=`echo "${f/$special_restart_from/$exp_name}"`
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@@ -220,31 +220,36 @@ do
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dir_rs=`dirname ${special_rs_nemo_stencil}`
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base_rs=`basename ${special_rs_nemo_stencil}`
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-
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- n_oce_rs=`find ${dir_rs} -name "${base_rs}oce_????.nc" | wc -l`
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- if(( n_oce_rs != nem_numproc )); then
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- echo "in special_rs_nemo, not the right amount of ocean restart files."
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- echo "${n_oce_rs} instead of ${nem_numproc}. exiting."
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- exit 2
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- fi
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- n_ice_rs=`find ${dir_rs} -name "${base_rs}ice_????.nc" | wc -l`
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- if(( n_ice_rs != nem_numproc )); then
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- echo "in special_rs_nemo, not the right amount of ice restart files."
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- echo "${n_ice_rs} instead of ${nem_numproc}. exiting."
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- exit 2
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+ if ${special_rs_nemo_rebuilt}
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+ then
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+
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+ if [[ -f ${special_rs_nemo_stencil}oce.nc && -f ${special_rs_nemo_stencil}ice.nc ]]
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+ then
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+ ln -fs ${special_rs_nemo_stencil}oce.nc restart_oce.nc
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+ ln -fs ${special_rs_nemo_stencil}ice.nc restart_ice.nc
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+ else
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+ echo "EXITING. ${special_rs_nemo_stencil}oce.nc or ${special_rs_nemo_stencil}ice.nc not found"
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+ exit 2
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+ fi
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+
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+ else
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+ for (( n=0 ; n<nem_numproc ; n++ ))
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+ do
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+ np=$(printf %04d ${n})
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+ if [[ -f ${special_rs_nemo_stencil}oce_${np}.nc && -f ${special_rs_nemo_stencil}ice_${np}.nc ]]
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+ then
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+ ln -fs ${special_rs_nemo_stencil}oce_${np}.nc restart_oce_${np}.nc
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+ ln -fs ${special_rs_nemo_stencil}ice_${np}.nc restart_ice_${np}.nc
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+ else
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+ echo "EXITING. ${special_rs_nemo_stencil}oce_${np}.nc or ${special_rs_nemo_stencil}ice_${np}.nc not found"
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+ exit 2
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+ fi
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+ done
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fi
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-
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- for (( n=0 ; n<nem_numproc ; n++ ))
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- do
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- np=$(printf %04d ${n})
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- ln -fs ${special_rs_nemo_stencil}oce_${np}.nc restart_oce_${np}.nc
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- ln -fs ${special_rs_nemo_stencil}ice_${np}.nc restart_ice_${np}.nc
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- done
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fi # if $special_restart
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-
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else # if ! $leg_is_restart
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# ---------------------------------------------------------------------
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@@ -257,7 +262,7 @@ do
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# ---------------------------------------------------------------------
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cd ${run_dir}
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### NEMO
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- outdir="${archive_dir}/restart/nemo/$(printf %03d $((leg_number-1)))"
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+ outdir="${archive_dir}/restart/$(printf %03d $((leg_number-1)))"
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ns=$(printf %08d $(( leg_start_sec / nem_time_step_sec )))
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@@ -279,6 +284,7 @@ do
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# -------------------------------------------------------------------------
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# *** Update ocean namelist
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# -------------------------------------------------------------------------
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+
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source build_namelist_cfg.sh > namelist_cfg
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@@ -286,7 +292,6 @@ do
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# *** Launch experiment
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# -------------------------------------------------------------------------
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-
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echo "START of mpirun"
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time_begin=$(date +%s)
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mpirun -np "${xio_numproc:?}" "${xio_exe_file:?}" : -np "${nem_numproc:?}" "${nem_exe_file:?}"
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@@ -297,7 +302,7 @@ do
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# *** Move output files to archive directory
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# -------------------------------------------------------------------------
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### NEMO
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- outdir="${archive_dir}/output/nemo/$(printf %03d $((leg_number)))"
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+ outdir="${archive_dir}/output/$(printf %03d $((leg_number)))"
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mkdir -p ${outdir}
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for v in grid_U grid_V grid_W grid_T icemod SBC scalar SBC_scalar diad_T \
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@@ -317,7 +322,7 @@ do
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# *** Move restart files to archive directory
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# -------------------------------------------------------------------------
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### NEMO
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- outdir="${archive_dir}/restart/nemo/$(printf %03d $((leg_number)))"
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+ outdir="${archive_dir}/restart/$(printf %03d $((leg_number)))"
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mkdir -p ${outdir}
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ns=$(printf %08d $(( leg_end_sec / nem_time_step_sec )))
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Charles Pelletier